View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21682_high_8 (Length: 332)
Name: NF21682_high_8
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21682_high_8 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 47688525 - 47688194
Alignment:
| Q |
1 |
tagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaacaaggattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688525 |
tagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaacaaggattat |
47688426 |
T |
|
| Q |
101 |
ctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcataaaagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688425 |
ctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcataaaagtta |
47688326 |
T |
|
| Q |
201 |
aaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688325 |
aaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaaagg |
47688226 |
T |
|
| Q |
301 |
ttttcgccgccatcaccaccgccgcctcgacc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47688225 |
ttttcgccgccatcaccaccgccgcctcgacc |
47688194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 35836306 - 35836358
Alignment:
| Q |
266 |
actagttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
318 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
35836306 |
actaattcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
35836358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University