View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21682_high_9 (Length: 331)
Name: NF21682_high_9
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21682_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 51436116 - 51435786
Alignment:
| Q |
1 |
aactccctcacgctctgcttgccaccatcatgaccaaactcgacgtcgcttccatctgttcattagccaccaccgcctccaccttccgctcctgcgccaa |
100 |
Q |
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| T |
51436116 |
aactccctcacgctctgcttgccaccatcatgaccaaactcgacgtcgcttccatctgttcattagccaccaccgcctccaccttccgctcttgcgccaa |
51436017 |
T |
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| Q |
101 |
acacatcctttccttcctccctaatttccatctcatcgtaagtatatagatctaatctcctaatttcacttatgaattttatttcgttcataactgttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51436016 |
acacatcctttccttcctccctaatttccatctcatcgtaagtatatagatctaatctcctaatttcacttatgaattttatttcgttcataactgttta |
51435917 |
T |
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| Q |
201 |
gatttttgaaattccccaatcttataacaatattttgttttttcaggacgttgcgccatctggaaacttactcacgccgttgctgccacgtaatccgtat |
300 |
Q |
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| T |
51435916 |
gctttttgaaattccccaatcttataacaatattttgttttttcaggacgttgcgccatctggaaacttactcacgccgttgctgccacgtaatccgtat |
51435817 |
T |
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| Q |
301 |
cttaagagtctcaaagttgattgtgatcgtc |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
51435816 |
cttaagagtctcaaagttgattgtgatcgtc |
51435786 |
T |
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