View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21682_low_1 (Length: 308)
Name: NF21682_low_1
Description: NF21682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21682_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 46836676 - 46836962
Alignment:
| Q |
14 |
atcaataaattcttgattatcaaccatacaaggtatgtcactagttgtcattcagcagcagaatattctgcatacaaagtcctttctaagtgtcagatta |
113 |
Q |
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| T |
46836676 |
atcaataaattcttgattatcaaccatacaaggtatgtcactagttgtcattcagcagcagaatattctgcatacaaagtcctttctaagtgtcagatta |
46836775 |
T |
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| Q |
114 |
gatctgtacttaaacaaacaacctcagtctagaatttccaatctagttttcagcttggtttctaaccacagtcatagaaaactatatcttggtgggacaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46836776 |
gatctgtacttaaacaaacaacctcagtctagaatttccaatctagttttcagcttggtttctaaccacagtcatagaaaactatatcttggtgggacaa |
46836875 |
T |
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| Q |
214 |
aaatgatacctattaataaaatcaggcacagtttctatcccgttgaatgtcaacaaggcttgcctgatgaagatgaagatgatgatg |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46836876 |
aaatggtacctattaataaaatcaggcacagtttctatcccgttgaatgtcaacaaggcttgcctgatgaagatgaagatgatgatg |
46836962 |
T |
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