View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_11 (Length: 381)

Name: NF21683_high_11
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_11
NF21683_high_11
[»] chr1 (3 HSPs)
chr1 (157-250)||(50590242-50590335)
chr1 (50-152)||(50589807-50589909)
chr1 (58-152)||(19598093-19598188)
[»] chr2 (4 HSPs)
chr2 (157-250)||(16959021-16959114)
chr2 (81-128)||(16959470-16959517)
chr2 (53-127)||(22885894-22885968)
chr2 (54-108)||(27739348-27739402)
[»] chr4 (5 HSPs)
chr4 (58-104)||(28966393-28966439)
chr4 (52-127)||(12295595-12295670)
chr4 (50-119)||(46699334-46699403)
chr4 (50-94)||(8254531-8254575)
chr4 (50-94)||(8267949-8267993)
[»] chr5 (1 HSPs)
chr5 (50-104)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 50590242 - 50590335
Alignment:
Q  157 cgactcaagatcacgcagatgaaacagaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 250  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50590242 cgactcaagatcacgcagatgaaacaaaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 50590335  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 50589807 - 50589909
Alignment:
Q  50 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaaaaaatcacagcggatatactca 149  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  50589807 tcagcaagcacaagagcaagacaacaaggttgatagtcttcaaggaaagcagcaacatcactatagcatttcgaagaaaaaatcacagtggatatactca 50589906  T
Q  150 caa 152  Q
    |||    
T  50589907 caa 50589909  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 19598188 - 19598093
Alignment:
Q  58 cacaagagcaagacaacgaggttgatagtcttcaaggaaagtagc-aacatcactatagcattttgaagaaaaaatcacagcggatatactcacaa 152  Q
    ||||||||||||||||||||||| |  |||| ||||||||| ||| |||||||| |||||||| |||||||  || ||||  | ||||||||||||    
T  19598188 cacaagagcaagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcattctgaagaatcaaccacaaagaatatactcacaa 19598093  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 16959114 - 16959021
Alignment:
Q  157 cgactcaagatcacgcagatgaaacagaaacttttaaggtaccacaacaatattgcgtccaagttgcaccagacacacaaacaaccagtttatt 250  Q
    ||||||||||||| |||||||||||  ||| |||||||| || | ||||||||||  ||||||||  || ||||||||||||||||| ||||||    
T  16959114 cgactcaagatcatgcagatgaaacgtaaatttttaaggaacaataacaatattgtctccaagttttacgagacacacaaacaaccaatttatt 16959021  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 16959517 - 16959470
Alignment:
Q  81 gatagtcttcaaggaaagtagcaacatcactatagcattttgaagaaa 128  Q
    |||||||||||||||||| | ||||||| | |||||||||||||||||    
T  16959517 gatagtcttcaaggaaagcaacaacatccccatagcattttgaagaaa 16959470  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 22885894 - 22885968
Alignment:
Q  53 gcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaa 127  Q
    |||||||||||||||||||||| || |||| |||||  |||||||| || |||||| |  |||||||| ||||||    
T  22885894 gcaagcacaagagcaagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaa 22885968  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 27739402 - 27739348
Alignment:
Q  54 caagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatc 108  Q
    ||||||||||||||||||||| ||| | | ||||| ||||||||| |||||||||    
T  27739402 caagcacaagagcaagacaacaaggcttaaagtctccaaggaaagcagcaacatc 27739348  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 28966439 - 28966393
Alignment:
Q  58 cacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaa 104  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  28966439 cacaagagcaagacaacgaggttgaaagtctccaaggaaagtagcaa 28966393  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 12295670 - 12295595
Alignment:
Q  52 agcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcattttgaagaa 127  Q
    ||||||||||||||||||||| ||||| | | ||||| |||| |||| || |||||||| |||||||| |||||||    
T  12295670 agcaagcacaagagcaagacagcgaggctaaaagtctccaagaaaagcagtaacatcaccatagcattctgaagaa 12295595  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 46699334 - 46699403
Alignment:
Q  50 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaacatcactatagcatt 119  Q
    ||||||||||||||||||||| | ||||| ||| |||||  |||||||| ||||||||||| ||| ||||    
T  46699334 tcagcaagcacaagagcaagatagcgaggctgaaagtctcgaaggaaagcagcaacatcaccataacatt 46699403  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 8254575 - 8254531
Alignment:
Q  50 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaagg 94  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||    
T  8254575 tcagcaggaacaagagcaagacaatgaggttgatagtctccaagg 8254531  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 8267993 - 8267949
Alignment:
Q  50 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaagg 94  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||    
T  8267993 tcagcaggaacaagagcaagacaatgaggttgatagtctccaagg 8267949  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 27712658 - 27712604
Alignment:
Q  50 tcagcaagcacaagagcaagacaacgaggttgatagtcttcaaggaaagtagcaa 104  Q
    |||||| |||||||||||| ||||||||||||| |||||  |||||||| |||||    
T  27712658 tcagcaggcacaagagcaatacaacgaggttgaaagtctctaaggaaagaagcaa 27712604  T

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