View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_12 (Length: 380)

Name: NF21683_high_12
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_12
NF21683_high_12
[»] chr4 (9 HSPs)
chr4 (13-305)||(25201454-25201744)
chr4 (15-217)||(13957478-13957681)
chr4 (23-299)||(51758625-51758901)
chr4 (15-217)||(42511386-42511586)
chr4 (15-180)||(10142410-10142576)
chr4 (15-97)||(14192065-14192147)
chr4 (15-191)||(51337817-51337997)
chr4 (15-149)||(28143196-28143333)
chr4 (56-299)||(20151992-20152236)
[»] chr7 (13 HSPs)
chr7 (15-299)||(39038311-39038593)
chr7 (15-299)||(43178647-43178928)
chr7 (15-171)||(24441706-24441864)
chr7 (15-149)||(6195668-6195805)
chr7 (15-191)||(6189152-6189332)
chr7 (15-97)||(19311691-19311773)
chr7 (15-191)||(48636868-48637048)
chr7 (15-97)||(8069846-8069928)
chr7 (32-241)||(23305442-23305648)
chr7 (32-91)||(8113566-8113625)
chr7 (81-217)||(8113640-8113778)
chr7 (15-191)||(48238625-48238804)
chr7 (107-180)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (15-299)||(11648157-11648440)
chr8 (15-299)||(960728-961012)
chr8 (63-169)||(35824166-35824273)
chr8 (15-119)||(602175-602280)
chr8 (15-173)||(11994463-11994623)
chr8 (99-217)||(9381946-9382062)
chr8 (85-167)||(32073462-32073545)
chr8 (15-97)||(2878957-2879039)
chr8 (107-274)||(24683070-24683231)
chr8 (15-97)||(6927306-6927388)
chr8 (15-97)||(28509524-28509606)
chr8 (15-97)||(28516731-28516813)
[»] chr6 (7 HSPs)
chr6 (33-299)||(1830840-1831104)
chr6 (15-217)||(11680517-11680720)
chr6 (21-181)||(14677914-14678076)
chr6 (15-97)||(33516375-33516457)
chr6 (15-181)||(4064985-4065150)
chr6 (56-171)||(14679000-14679116)
chr6 (23-76)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (21-299)||(5120580-5120860)
chr5 (15-217)||(43171066-43171267)
chr5 (135-297)||(23318168-23318329)
chr5 (28-181)||(26402144-26402295)
chr5 (15-181)||(14651489-14651656)
chr5 (15-191)||(7850480-7850660)
chr5 (220-299)||(33922247-33922326)
chr5 (15-97)||(38491310-38491392)
[»] chr1 (12 HSPs)
chr1 (135-299)||(12783770-12783933)
chr1 (64-281)||(47397224-47397437)
chr1 (21-169)||(12028035-12028183)
chr1 (32-169)||(5208454-5208592)
chr1 (15-133)||(48646236-48646355)
chr1 (15-191)||(36296868-36297048)
chr1 (15-191)||(42722403-42722583)
chr1 (15-149)||(28945560-28945697)
chr1 (15-97)||(26221954-26222036)
chr1 (28-98)||(49228403-49228473)
chr1 (28-133)||(35501355-35501460)
chr1 (99-146)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (23-217)||(47185206-47185401)
chr3 (15-97)||(6024505-6024587)
chr3 (15-191)||(23044645-23044825)
chr3 (15-149)||(31884705-31884842)
chr3 (98-151)||(44879476-44879529)
chr3 (15-91)||(44879802-44879878)
[»] chr2 (17 HSPs)
chr2 (15-217)||(25621679-25621882)
chr2 (126-299)||(6883442-6883607)
chr2 (32-217)||(14904265-14904451)
chr2 (187-295)||(25415782-25415890)
chr2 (28-299)||(38422322-38422594)
chr2 (15-181)||(90080-90248)
chr2 (68-236)||(43672737-43672906)
chr2 (15-97)||(2565866-2565948)
chr2 (15-97)||(18780924-18781006)
chr2 (15-149)||(19678245-19678382)
chr2 (15-97)||(6271355-6271437)
chr2 (15-191)||(29303342-29303522)
chr2 (15-97)||(45277251-45277333)
chr2 (195-299)||(10023316-10023418)
chr2 (15-97)||(7880108-7880190)
chr2 (32-101)||(25415498-25415567)
chr2 (15-78)||(6883603-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (18-134)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (128-217)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (15-93)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 25201744 - 25201454
Alignment:
Q  13 acatcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  25201744 acatcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatatttgatacaaaattagtgttag 25201645  T
Q  112 actttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatg 211  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25201644 actttttagagaaatcataaatgcaagaactcctttgtatgtaagaagtacatcattcctctctttatataccataagtatttctaacaagtccattatg 25201545  T
Q  212 atgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttttttgtc 305  Q
    |||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||    
T  25201544 atgataaaaaatcaatattagactgttgttaaaagtgtactttct---atgaattttagcacacttgataacttatatcaataatttttttgtc 25201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 13957681 - 13957478
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 113  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||||||     
T  13957681 atcaacacgtaattaactaaattttaaacttttggatgcaaaattcttcaatgttaaactcataacaatgataatacatgatacaaaattagtgttagag 13957582  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    |||||||| ||||||||||| |||||| || ||||||| ||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||    
T  13957581 tttttagataaatcatagatacaagaagtcatttgtatactagaagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgat 13957482  T
Q  214 gata 217  Q
    ||||    
T  13957481 gata 13957478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 51758901 - 51758625
Alignment:
Q  23 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaa-ctcataacaacaataatacttgatacaaa-ttagagttagactttttag 120  Q
    |||| |||||||| ||||||||||| |||  |||| ||  |||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  51758901 gtaattaattaaaatttaaacttttggatggaaaagtcggcaatgttaaaactcataacaacaataatacatgatacaaaattagtgttagactttttag 51758802  T
Q  121 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaa 220  Q
    || ||||  |||| ||||||||||||||| |||| ||||||||||||||| || |||||||   |||||||| | ||||||||| |||| ||||||| ||    
T  51758801 agtaatctaagatacaagaactcctttgtttgcttgaagtacatcattccgctttttatatgatataagtatctttaacaagtttattacgatgatacaa 51758702  T
Q  221 aattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    ||||||| ||||||  | |||||| |||||| ||| ||| |||||||||||||||||||||||||| ||||| ||||||    
T  51758701 aattaatgttagac--tagttaaaggtgtaccttcaatggtgaattttagcacacttaataacttacatcaacaatttt 51758625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 42511386 - 42511586
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 113  Q
    |||| ||||||| ||| ||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||  |    
T  42511386 atcagcacgtaattaactaaattttaaactcttagatgcaaa-ttctccaatgttaaactcataacaacaataatacatgatacaaaattagtgtta--c 42511482  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    ||||||||  |||||||||  ||||||||| ||||||| ||||||||||||||||||||| |||||||   | |||||| ||||||||||||||||| ||    
T  42511483 tttttagaagaatcatagacacaagaactcttttgtatactagaagtacatcattcctctttttatatgttagaagtatctctaacaagttcattataat 42511582  T
Q  214 gata 217  Q
    ||||    
T  42511583 gata 42511586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 10142576 - 10142410
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 113  Q
    |||| ||||||| ||| ||||||||||||||||  || ||||||||| |||||||||||| |||||||||||||||| |||||| ||||||| |||||||    
T  10142576 atcaacacgtaattaactaaattttaaacttttgaatgcaaaattctccaatgttaaactaataacaacaataatacatgatacaaaattagtgttagac 10142477  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttata 180  Q
    |||||| || |||||||||| || |||||||||||||| ||||| |||||| |||||||| ||||||    
T  10142476 tttttaaaggaatcatagatacatgaactcctttgtatactagatgtacatgattcctctttttata 10142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 14192065 - 14192147
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14192065 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 14192147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 51337997 - 51337817
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  51337997 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 51337898  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  51337897 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 51337817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 28143196 - 28143333
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| |||||||  |||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  28143196 atcaacacgtaatcaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 28143295  T
Q  112 actttttagagaaatcatagatgcaagaactcctttgt 149  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  28143296 attttttagagtaatctaagatacaataactcatttgt 28143333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 299
Target Start/End: Original strand, 20151992 - 20152236
Alignment:
Q  56 aattcttcaatgttaaactcataacaacaataatacttgatacaaattaga-gttagactttttagagaaatcatagatgcaagaactcctttgtatgct 154  Q
    |||||| |||| |||||| ||||||||||| |||| ||||||||||    | |||| ||||||||||| ||| | | |||||||||||||||| || | |    
T  20151992 aattctccaatattaaacccataacaacaacaatagttgatacaaaaccaatgttaaactttttagaggaataaaaaatgcaagaactcctttataagtt 20152091  T
Q  155 agaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtacttt 254  Q
    | ||||| ||||||| ||| |||||||   | |||||| |||| |||||| ||| |||| ||| || || | | ||||| ||||||||| ||| |   |     
T  20152092 acaagtatatcattcatctttttatatgttacaagtatctctatcaagtttattttgattatataatatgagtgttagaatgttgttaatagtatgtctc 20152191  T
Q  255 ctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    | |||| |||||| |||||||||| | ||||||||||||| ||||    
T  20152192 caatgaggaatttaagcacacttactcacttatatcaatactttt 20152236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 39038311 - 39038593
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 113  Q
    |||| ||||||| |||||||||||||||||||| |||  |||  ||  ||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  39038311 atcaacacgtaattaattaaattttaaacttttggatggaaa--tcc-caatgttaaactcataacaacaataatacatgatacaaaattagtgttagac 39038407  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    ||||||||| |||| || ||  || ||||||||||||||||||||||||||||||||||| |||||||   |||||||| ||||||||||| ||||||||    
T  39038408 tttttagaggaatcgtatatagaaaaactcctttgtatgctagaagtacatcattcctctttttatatgttataagtatctctaacaagtttattatgat 39038507  T
Q  214 gataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    |||| ||||| ||| || || ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39038508 gatacaaaatcaatgttggattgttgttaaaagtgtaccttcaatgatgaattttagcacacttaataatttatatcaataatttt 39038593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 43178647 - 43178928
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 113  Q
    |||| ||||||| |||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||   |||||| | ||||||| |||| |||||||    
T  43178647 atcaacacgtaattaattaaattttaaacttttggataaaaaaatctccaatgttaaactcataacaa---taatacat-atacaaaattagtgttagac 43178742  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    ||||||||| ||||| | || |||||||||||||||||||||||||||||||||| |||| |||||||   |||||||| |||| ||| |||||||||||    
T  43178743 tttttagaggaatcacaaatacaagaactcctttgtatgctagaagtacatcatttctctttttatatgatataagtatctctaccaaattcattatgat 43178842  T
Q  214 gataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    |||| ||||| ||| ||||||| |||||||| |||||| ||| ||| | ||||||| |||||||||||||||||||||||| ||||    
T  43178843 gatacaaaatcaatgttagactattgttaaatgtgtaccttcaatggttaattttaacacacttaataacttatatcaatactttt 43178928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 24441706 - 24441864
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgtt-aaactcataacaacaataatacttgatacaaa-ttagagttaga 112  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||  |||| |    
T  24441706 atcaacacgtaattaaataaattttaaacttttggatgcaaaattcttcaatgtttaaactcaaaacaacaataatacatgatacaaaattattgttaaa 24441805  T
Q  113 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcct 171  Q
    |||||||||| |||||||||  ||||||||||||||||| ||||||||| |||||||||    
T  24441806 ctttttagaggaatcatagacacaagaactcctttgtatactagaagtatatcattcct 24441864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 6195668 - 6195805
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| |||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  6195668 atcaacacgtaattaattaaattttaaacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 6195767  T
Q  112 actttttagagaaatcatagatgcaagaactcctttgt 149  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  6195768 attttttagagtaatctaagatacaataactcatttgt 6195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 6189152 - 6189332
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  6189152 atcaacacgtaattaattaaattttatacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 6189251  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  6189252 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 6189332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 19311691 - 19311773
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19311691 atcaacacgtaattaattaaattttagacattttgatacaaaattctccaatgttaaacccataacaacaataatacttgata 19311773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 48637048 - 48636868
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  48637048 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 48636949  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  48636948 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 48636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 8069928 - 8069846
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  8069928 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgata 8069846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 23305648 - 23305442
Alignment:
Q  32 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatactt--gata-caaattagagttagactttttagagaaatca 128  Q
    ||||||||| |||||| ||||||||||| | ||||||||||| |||||| ||||||||||||  ||||  |||| |  |||||||||||| ||| ||||     
T  23305648 taaattttagacttttggatacaaaattatccaatgttaaacccataactacaataatacttgcgatagaaaatcaaggttagacttttttgaggaatct 23305549  T
Q  129 tagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaata 228  Q
     |||| | ||||||| ||||||||||||||||| || |||||||| || |||| | | |||      || ||||||||||| |||| || ||||| |||     
T  23305548 aagatacgagaactcatttgtatgctagaagtagattattcctcttttaatatgctacaag------taccaagttcattacgatgttacaaaatcaatg 23305455  T
Q  229 ttagactgttgtt 241  Q
    |||||||||||||    
T  23305454 ttagactgttgtt 23305442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 8113566 - 8113625
Alignment:
Q  32 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatac 91  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  8113566 taaattttaaacttttggatgcaaaattctccaatgttaaactcataacaacaataatac 8113625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 8113640 - 8113778
Alignment:
Q  81 aacaataatacttgatacaaa-ttagagttagacttttt-agagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctcttta 178  Q
    ||||||||||| ||||||||| |||| |||||||||||| |||| |||||| ||| |||||  ||||||||||  |||||||||||||||| |   ||||    
T  8113640 aacaataatacatgatacaaaattagtgttagacttttttagaggaatcatcgatacaagagttcctttgtatagtagaagtacatcattcttactttta 8113739  T
Q  179 tataccataagtatttctaacaagttcattatgatgata 217  Q
    |||   |||  ||| ||||||||||||||||||||||||    
T  8113740 tatgttatagatatctctaacaagttcattatgatgata 8113778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 48238804 - 48238625
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || |||  |||||||||||| ||||||| ||| |||||||||||||||||||||||    ||||||| ||||     
T  48238804 atcaacacgtaattaattaaattttagacatttgaatacaaaattctccaatgtt-aacacataacaacaataatacttgataaacaaaattagtgttaa 48238706  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  48238705 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 48238625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 14574068 - 14573995
Alignment:
Q  107 gttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttata 180  Q
    ||||||||||| |||| ||||| ||| |||||||||||||| || | || ||||||||||||| ||| ||||||    
T  14574068 gttagacttttcagaggaatcaaagaggcaagaactcctttatacgttacaagtacatcattcttctttttata 14573995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 11648157 - 11648440
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 113  Q
    |||| ||| ||| |||||||||||||||||||| |||  ||||| || |||||||||||||||||||||||||| |  ||||||||| |||| ||| |||    
T  11648157 atcaacacataattaattaaattttaaacttttggatgaaaaatactccaatgttaaactcataacaacaataaca--tgatacaaaattagtgtttgac 11648254  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    | ||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||||||||| ||    
T  11648255 tctttagaggaatcatagatacaataactcctttgtatgctagaaatacatcattcctctttttataaactataagtatctctaacaagttcattataat 11648354  T
Q  214 gataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    |||| ||||||||| ||||||| |||||||| |||||  ||| ||| || |||| ||||||||||||||||||||| |||| ||||    
T  11648355 gatacaaaattaatgttagactattgttaaatgtgtaacttcaatggtgtatttaagcacacttaataacttatattaatagtttt 11648440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 960728 - 961012
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttaga- 112  Q
    |||| ||||||| |||||||| ||||||||||| ||| |||||||||  |||||||||||||| ||||||| ||||| || | | ||||||  ||||||     
T  960728 atcaacacgtaattaattaaaatttaaactttttgatgcaaaattctctaatgttaaactcatcacaacaagaatacatggtgcaaaattaatgttagat 960827  T
Q  113 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatga 212  Q
     ||||||||| |||||||||| ||||||||| ||||||||||| ||||  ||||||||||| |||||||   ||||  ||  ||||||||||||||||||    
T  960828 ttttttagaggaatcatagatacaagaactcatttgtatgctataagt--atcattcctctttttatatgttataaacatagctaacaagttcattatga 960925  T
Q  213 tgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    ||||| ||||||||| || || ||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||||||||||    
T  960926 tgatacaaaattaatgttggattgttgttaaaagtgtgccttcaatggtcaattttagcacacttaataacttatatcaataatttt 961012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 35824273 - 35824166
Alignment:
Q  63 caatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagta 161  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| ||||||||||  ||||| |||||||||| | |||||||    
T  35824273 caatgttaaactcataacaacaataatacatgatacaaaattagtgttaaactttttagaggaatcatagataaaagaaatcctttgtataccagaagta 35824174  T
Q  162 catcattc 169  Q
    ||||||||    
T  35824173 catcattc 35824166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 602175 - 602280
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 113  Q
    |||| ||||||| |||||||||||||||||||| |||  ||||||||  |||||||||||||||||||||||||||| ||| || ||||||| |||||||    
T  602175 atcaacacgtaattaattaaattttaaacttttggatggaaaattctaaaatgttaaactcataacaacaataatacatgacacaaaattagtgttagac 602274  T
Q  114 ttttta 119  Q
    ||||||    
T  602275 ttttta 602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 11994463 - 11994623
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttaga 112  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  |  | |||| |    
T  11994463 atcaacacgtaattaattaaattttagacattttgatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgttaaa 11994562  T
Q  113 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctct 173  Q
     ||||||||| ||||  |||| ||| ||||| ||||||| ||| || || |||||||||||    
T  11994563 atttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctct 11994623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 9381946 - 9382062
Alignment:
Q  99 aaattagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaa 198  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||| |||||||  |||||||||||||||| | | ||||||| | | | |||   ||||    
T  9381946 aaattagtgttagactttttagaggaatcatagatacaagaactcttttgtatattagaagtacatcattcttatttttatatgctacaggta--gctaa 9382043  T
Q  199 caagttcattatgatgata 217  Q
    |||||||||||||||||||    
T  9382044 caagttcattatgatgata 9382062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 32073545 - 32073462
Alignment:
Q  85 ataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcat 167  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||    
T  32073545 ataatacaagatacaaagttagagttagactttttagaggaatcatagatacaaaaactcatttgtatgctagaagtacatcat 32073462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 2878957 - 2879039
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2878957 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatattaaactcataacaacaataatacttgata 2879039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 24683231 - 24683070
Alignment:
Q  107 gttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttca 206  Q
    |||||||||||||||| ||||  |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||| | | ||       || |||||| |    
T  24683231 gttagactttttagagtaatctaagatacaagaactcatttgtatgctacaagtaaatcattcctctttttatatgctacaa------ataccaagttta 24683138  T
Q  207 ttatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcaca 274  Q
    ||||||| ||| ||||| ||| |||||||||||||||  |||||| | | ||| ||||||||||||||    
T  24683137 ttatgataatacaaaatcaatgttagactgttgttaactgtgtacctccaatggtgaattttagcaca 24683070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 6927306 - 6927388
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  6927306 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 6927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 28509606 - 28509524
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  28509606 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 28509524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 28516813 - 28516731
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  28516813 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 28516731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 33 - 299
Target Start/End: Complemental strand, 1831104 - 1830840
Alignment:
Q  33 aaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatag 131  Q
    ||||||||||||||| |||  |||||||| |||||||||||| |||||||   |||||| ||||||||| ||||  ||||||||||||||| |||||       
T  1831104 aaattttaaacttttggatggaaaattctccaatgttaaacttataacaa---taatacatgatacaaaattagttttagactttttagagtaatcaata 1831008  T
Q  132 atgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatatta 231  Q
    || ||||| |||||||||||||||||||| |||||||| ||| |||||||   ||||||||||||| ||||||||||||||||||| ||||| ||| |||    
T  1831007 atacaagagctcctttgtatgctagaagtgcatcattcatctttttatatgttataagtatttctagcaagttcattatgatgatacaaaatcaatgtta 1830908  T
Q  232 gactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
     ||| |||||||| |||||||||| ||| | |||||||| ||||||||||||||||||||||||||||    
T  1830907 tactattgttaaatgtgtactttcaatggttaattttaggacacttaataacttatatcaataatttt 1830840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 11680517 - 11680720
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 113  Q
    |||| ||||||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||  |||||||    
T  11680517 atcaacacgtaattaactaaattttaaagttttagatgcaaaattctccaatgttaaactcctaacaacaataatacttgatacaaaattattgttagac 11680616  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    ||||| ||| |||| ||||   |  |||||| |  ||| |||||||||||||||| |||| ||||||| | |||||||| ||||||||||||||||||||    
T  11680617 ttttttgaggaatcttagacagagtaactccataatatactagaagtacatcattactctttttatatgctataagtatctctaacaagttcattatgat 11680716  T
Q  214 gata 217  Q
    ||||    
T  11680717 gata 11680720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 14678076 - 14677914
Alignment:
Q  21 acgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttagacttttt 118  Q
    |||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  |  | |||||| |||||    
T  14678076 acgtaattaattaaattttagacatttggatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgttagaattttt 14677977  T
Q  119 agagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 181  Q
    |||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  14677976 agagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 14677914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 33516375 - 33516457
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  33516375 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 33516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 4064985 - 4065150
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 113  Q
    |||| ||| ||| |||||||||||||  ||||| ||| || |||||| |||| |||||| |||| ||||||| ||||||||||| |||  || |||  ||    
T  4064985 atcaacacttaattaattaaattttagccttttggatgcataattctccaatattaaacccatagcaacaattatacttgatacaaaaccagcgtt--ac 4065082  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 181  Q
    ||||||||| || || |||| ||||||||||||| |||| || ||| ||||||||||||  |||||||    
T  4065083 tttttagaggaaccaaagatacaagaactcctttatatgttacaagaacatcattcctcattttatat 4065150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 14679000 - 14679116
Alignment:
Q  56 aattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttagagaaatcatagatgcaagaactcctttgtatgct 154  Q
    ||||||||||| |||||| ||| | |||||||||||||||||| ||| ||| |||| | ||||||||  ||||| |||||||| | ||| ||| |||| |    
T  14679000 aattcttcaatattaaacgcatgataacaataatacttgatacaaaactagtgttaaattttttagaagaatcagagatgcaaaatctcatttatatgtt 14679099  T
Q  155 agaagtacatcattcct 171  Q
    | |||| ||||||||||    
T  14679100 acaagtgcatcattcct 14679116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 1831190 - 1831137
Alignment:
Q  23 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactca 76  Q
    |||| |||||| ||||||||||||| |||  |||||||| ||||||||||||||    
T  1831190 gtaattaattatattttaaacttttggatcgaaaattctccaatgttaaactca 1831137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 5120580 - 5120860
Alignment:
Q  21 acgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagacttttta 119  Q
    |||||| |||||||||||||||||||| |||  |||||||| ||||||||  || |||||||||||||||| ||||||||| |||| |||||| ||||||    
T  5120580 acgtaattaattaaattttaaacttttggatgaaaaattctccaatgtta--cttataacaacaataatacatgatacaaaattagtgttagagttttta 5120677  T
Q  120 gagaaatcatagatgcaagaact---cctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgat 216  Q
     || |||||||||| ||||||||   | ||||||||||||||||||| ||||||||| |||||||   |||||||| ||||||||||||||||| |||||    
T  5120678 aaggaatcatagatacaagaactgatcatttgtatgctagaagtacaccattcctctttttatatgatataagtatctctaacaagttcattataatgat 5120777  T
Q  217 aaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    | || || ||| ||| ||||||||||||||||||| ||| |   ||||||||||||||||| |||| ||||||||||||||||    
T  5120778 agaatatcaatgttaaactgttgttaaaagtgtaccttcaaatgtgaattttagcacacttgataatttatatcaataatttt 5120860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 43171066 - 43171267
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 113  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||| | |||| ||||||| |||||||    
T  43171066 atcaacacgtaattaactaaattttaaacttttggatgcaaaattctccaatgttaaactcgtaacaaaaataatacataatacaaaattagtgttagac 43171165  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
    ||| ||||| ||||||| || ||||||||||||||||  ||||||||||||||||||| | |||||||   ||| |||| ||||  ||||||||||||||    
T  43171166 tttgtagaggaatcataaatacaagaactcctttgtacactagaagtacatcattcctttttttatatgttataggtatctcta--aagttcattatgat 43171263  T
Q  214 gata 217  Q
    ||||    
T  43171264 gata 43171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 297
Target Start/End: Original strand, 23318168 - 23318329
Alignment:
Q  135 caagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagac 234  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||| ||| ||||| ||| |||       
T  23318168 caagaactcctt-gtatgttagaagtacatcattcctctttttatatactataagtatctttaacaagttcattatgattatacaaaatcaatgttatgt 23318266  T
Q  235 tgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatt 297  Q
    ||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||||||    
T  23318267 tgttgttaaaagtgtacattcaatggtgaaatttatcacacttaataacttatatcaataatt 23318329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 26402295 - 26402144
Alignment:
Q  28 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaa-attagagttagactttttagagaaat 126  Q
    |||||||||||||||||||| |||  |||||||| |||| ||||||||||   |  |||||||| |||||||| ||||| |||| |||||||||||||||    
T  26402295 taattaaattttaaacttttggatggaaaattctccaattttaaactcat---actaataatacatgatacaacattagtgttacactttttagagaaat 26402199  T
Q  127 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 181  Q
    ||||| | ||||||||||||||||| ||||||||| ||||||| ||| |||||||    
T  26402198 cataggtacaagaactcctttgtattctagaagtatatcattcttctttttatat 26402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 14651489 - 14651656
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta-gagttagac 113  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||  | | |||| |     
T  14651489 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaatgtgttaaat 14651588  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 181  Q
    ||||||||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  14651589 tttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 14651656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 7850660 - 7850480
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  7850660 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 7850561  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  7850560 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 7850480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 33922247 - 33922326
Alignment:
Q  220 aaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    |||| ||| ||| |||||| |||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||    
T  33922247 aaatcaattttaaactgttattaaaagtgtaccttcaatgatgaattttagcacacttaatcacttatgtcaataatttt 33922326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 38491392 - 38491310
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38491392 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 38491310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 135 - 299
Target Start/End: Original strand, 12783770 - 12783933
Alignment:
Q  135 caagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagac 234  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  12783770 caagaactcctt-gtatcctagaagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgatgatacaaaatcaatgttagac 12783868  T
Q  235 tgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  12783869 tgttgttaaaagtgtaccttcaatgatgaattttaacacacttaataacttttatcaataatttt 12783933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 64 - 281
Target Start/End: Original strand, 47397224 - 47397437
Alignment:
Q  64 aatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtac 162  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||  ||| ||||||||||| ||||||| || ||| ||||||||| ||||||||||| ||    
T  47397224 aatgttaaactcataacaacaaaaatacatgatacaaaattagttttacactttttagaggaatcataaatacaataactcctttatatgctagaaggac 47397323  T
Q  163 atcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatg 262  Q
    ||||||||||||||||||| | |||||||| |||||||||||||     |||||| ||||| ||| |||||| |||||||||||||||| ||| ||| |     
T  47397324 atcattcctctctttatatgctataagtatctctaacaagttca-----atgatacaaaatcaatgttagacggttgttaaaagtgtaccttcaatggta 47397418  T
Q  263 aattttagcacacttaata 281  Q
    |||||||||||||||||||    
T  47397419 aattttagcacacttaata 47397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 12028183 - 12028035
Alignment:
Q  21 acgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagacttttta 119  Q
    |||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||    
T  12028183 acgtaattaactaaattttaaacttttggatgcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagac-tttta 12028085  T
Q  120 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattc 169  Q
    ||| |||||||||| ||||||||||||||||| | |||| ||||||||||    
T  12028084 gaggaatcatagatacaagaactcctttgtatacaagaaatacatcattc 12028035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 5208454 - 5208592
Alignment:
Q  32 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcata 130  Q
    |||||||||||||||| ||| ||||||||| |||||||| || |||||||||| |||||  ||||||||| |||| ||||||||||||||||||||||||    
T  5208454 taaattttaaacttttggatgcaaaattctacaatgttagacccataacaacagtaatatatgatacaaaattagtgttagactttttagagaaatcata 5208553  T
Q  131 gatgcaagaactcctttgtatgctagaagtacatcattc 169  Q
    ||| ||||||||| || |||| |||||||| ||||||||    
T  5208554 gatacaagaactcattcgtatactagaagtgcatcattc 5208592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 48646355 - 48646236
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata-caaattagagttagac 113  Q
    |||| |||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||||||     
T  48646355 atcaacacgcaattaattaaattttaaacatttagatgcaaaattcttcaatgttaaactcataacaacaataatacatgatataaaattagtgttagaa 48646256  T
Q  114 tttttagagaaatcatagat 133  Q
    ||||||||| || |||||||    
T  48646255 tttttagaggaaccatagat 48646236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 36297048 - 36296868
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  36297048 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 36296949  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  36296948 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 36296868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 42722583 - 42722403
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  42722583 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 42722484  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  42722483 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 42722403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 28945560 - 28945697
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  28945560 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 28945659  T
Q  112 actttttagagaaatcatagatgcaagaactcctttgt 149  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  28945660 attttttagagtaatctaagatacaataactcatttgt 28945697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 26222036 - 26221954
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26222036 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataaaaacaataatacttgata 26221954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 49228403 - 49228473
Alignment:
Q  28 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac 98  Q
    |||||| |||||||||||||   |  |||||||| ||||||||||||||||||||||||||||| ||||||    
T  49228403 taattacattttaaacttttgattgaaaaattctccaatgttaaactcataacaacaataatacgtgatac 49228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 35501355 - 35501460
Alignment:
Q  28 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaattagagttagactttttagagaaatc 127  Q
    |||||||||||||  |||||  |||||  ||||| ||||||||||| ||||||||  ||||||||||||| |||   | |||||||||||| ||||||||    
T  35501355 taattaaattttaggcttttgtatacatcattctccaatgttaaacccataacaattataatacttgataaaaaaatgtgttagactttttcgagaaatc 35501454  T
Q  128 atagat 133  Q
    | ||||    
T  35501455 aaagat 35501460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 12783628 - 12783675
Alignment:
Q  99 aaattagagttagactttttagagaaatcatagatgcaagaactcctt 146  Q
    ||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  12783628 aaattagtggtagactttttagaggaatcatagatacaagaactcctt 12783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 217
Target Start/End: Complemental strand, 47185401 - 47185206
Alignment:
Q  23 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttaga 121  Q
    |||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||    
T  47185401 gtaattaactaaattttaaacatttggatgcaaaattctccaatgttaaactcataacaacaataattcatgatacaaaattagtgttagactttttaga 47185302  T
Q  122 gaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 217  Q
    | |||||||||| ||||||||| ||||||   || |||||||||||| |||| ||||||| | |||||||| ||||||||||||||| ||||||||    
T  47185301 ggaatcatagatacaagaactcttttgtacattataagtacatcatttctctttttatatgctataagtatctctaacaagttcattgtgatgata 47185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 6024505 - 6024587
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6024505 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 6024587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 23044645 - 23044825
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  23044645 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 23044744  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  23044745 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 23044825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 31884705 - 31884842
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  31884705 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 31884804  T
Q  112 actttttagagaaatcatagatgcaagaactcctttgt 149  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  31884805 attttttagagtaatctaagatacaataactcatttgt 31884842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 44879529 - 44879476
Alignment:
Q  98 caaattagagttagactttttagagaaatcatagatgcaagaactcctttgtat 151  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||    
T  44879529 caaattagtgttagactttttagaggaatcatagatacaagaactcctttgtat 44879476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 44879878 - 44879802
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatac 91  Q
    |||| ||||||| ||| |||||||||| ||| ||||| | ||||||| |||| ||||||||||||||| ||||||||    
T  44879878 atcaacacgtaattaactaaattttaatcttctagatgccaaattctccaatattaaactcataacaataataatac 44879802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 25621882 - 25621679
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 113  Q
    |||| ||||||| || ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  25621882 atcaacacgtaattagttaaattttaaacttttggaagcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagac 25621783  T
Q  114 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 213  Q
     |||||||| ||||||| || ||| ||||| ||||||| || |||||||||||||||||| ||| |||   |||  ||| |||||||| |||||||| ||    
T  25621782 cttttagaggaatcataaatacaataactcatttgtatactggaagtacatcattcctctttttctatgatatacatatctctaacaacttcattataat 25621683  T
Q  214 gata 217  Q
    ||||    
T  25621682 gata 25621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 6883607 - 6883442
Alignment:
Q  126 tcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaatta 225  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||||| | | |||||| |||||||||||||||||||||||| ||||| |    
T  6883607 tcatagatacaagaactcatttgtatactaaaagtacatcattcctctttttatatgctacaagtatctctaacaagttcattatgatgatataaaatca 6883508  T
Q  226 atattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    || || ||| ||||||||||| |||   ||| |||     ||||||||||||||||| ||||||||||||||||    
T  6883507 atgttcgaccgttgttaaaagcgta---tctttga-----tttagcacacttaataatttatatcaataatttt 6883442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 14904451 - 14904265
Alignment:
Q  32 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcata 130  Q
    ||||||||||||||||  || ||||||| | ||||||||| ||| ||||||||||||||| ||||||||| |||  |||||| ||||||||  |||||||    
T  14904451 taaattttaaacttttgaatgcaaaattatccaatgttaacctcctaacaacaataatacatgatacaaaattattgttagattttttagaagaatcata 14904352  T
Q  131 gatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 217  Q
    ||  ||| ||||| ||| ||| ||| ||||| |||| |||||| |||||||   |||||||| ||||||||||||||||||||||||    
T  14904351 gaaacaataactcatttatatactataagtatatcactcctctttttatatgttataagtatctctaacaagttcattatgatgata 14904265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 25415782 - 25415890
Alignment:
Q  187 aagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataactta 286  Q
    |||||| |||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| | |||||||||||| |||||||| || |||    
T  25415782 aagtatctctaacaagttcattatgatgatacaaaatcaatgttagattgttgttaaaagtgtaccttcaaagatgaattttagtacacttaaaaattta 25415881  T
Q  287 tatcaataa 295  Q
    |||||||||    
T  25415882 tatcaataa 25415890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 38422322 - 38422594
Alignment:
Q  28 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatt-agagttagactttttagagaaat 126  Q
    |||||||||||||  ||||| ||| || | |||| |||| | |||| |||||||| |||| |||||||||||||   || |||||||||||||||  |||    
T  38422322 taattaaattttagccttttggatgcagacttctccaatatcaaacccataacaataatattacttgatacaaaaccagtgttagactttttagaagaat 38422421  T
Q  127 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaa 226  Q
    || |||| | ||||||||||| |||| || ||||||||||||||||| ||||||| | | |||||| |||| |||||||||| |||||||| || || |     
T  38422422 caaagatactagaactcctttatatgttacaagtacatcattcctctttttatatgctacaagtatctctatcaagttcattgtgatgatacaatatcag 38422521  T
Q  227 tattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 299  Q
    | |||||||  |||||| | ||| | | | |||  |||||| ||| || |||||  |||||||||||||||||    
T  38422522 tgttagactactgttaacattgtgcctcccatggggaatttaagcccatttaatcccttatatcaataatttt 38422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 90080 - 90248
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttaga 112  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||  |  | |||| |    
T  90080 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaaatgtgttaaa 90179  T
Q  113 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 181  Q
     ||||||||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  90180 ttttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 90248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 43672737 - 43672906
Alignment:
Q  68 ttaaactcataacaacaataatacttgatacaaatt-agagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatca 166  Q
    |||||| ||||||| ||||||||||||||||||| | ||  ||||||||||||||| ||||| |||| |   ||||||||| |||| || ||||||||||    
T  43672737 ttaaacccataacatcaataatacttgatacaaaatcagtattagactttttagaggaatcaaagataccgtaactcctttatatgttacaagtacatca 43672836  T
Q  167 ttcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactg 236  Q
    ||||||| ||||||| |   ||||||||||| ||| |||||| |||||||| || || ||| ||||||||    
T  43672837 ttcctctttttatatgctgcaagtatttctatcaaattcattgtgatgatacaatatcaatgttagactg 43672906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 2565948 - 2565866
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2565948 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 2565866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 18780924 - 18781006
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18780924 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 18781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 19678382 - 19678245
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  19678382 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 19678283  T
Q  112 actttttagagaaatcatagatgcaagaactcctttgt 149  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  19678282 attttttagagtaatctaagatacaataactcatttgt 19678245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 6271355 - 6271437
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  6271355 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgata 6271437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 29303522 - 29303342
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 111  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||  ||||| |||||||||||||||||||||||    ||||||| ||||     
T  29303522 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaattctaaacacataacaacaataatacttgataaacaaaattagtgttaa 29303423  T
Q  112 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 191  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  29303422 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 29303342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 45277251 - 45277333
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  45277251 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 45277333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 10023418 - 10023316
Alignment:
Q  195 ctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaata 294  Q
    ||||||||||||||||||||||| ||||| ||| ||||| || |||||||||||  | ||| |||  |||||||||||||||| ||||||  ||||||||    
T  10023418 ctaacaagttcattatgatgatacaaaatcaatgttagattgatgttaaaagtgcgcattcaatggagaattttagcacacttcataact--tatcaata 10023321  T
Q  295 atttt 299  Q
    |||||    
T  10023320 atttt 10023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 7880108 - 7880190
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 97  Q
    |||| ||||||| || |||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  7880108 atcaacacgtaattagttaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 7880190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 25415498 - 25415567
Alignment:
Q  32 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa 101  Q
    ||||||||||| |||| |||  ||||||||  |||||||| ||||||||||||||||||| |||||||||    
T  25415498 taaattttaaagtttttgatggaaaattctctaatgttaagctcataacaacaataatacatgatacaaa 25415567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 6883666 - 6883603
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcata 78  Q
    |||| ||| ||| ||||||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  6883666 atcaacacataattaattaaattttaaatttttggatagaaaattctccaatgttaaactcata 6883603  T

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Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 1020 - 903
Alignment:
Q  18 atcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagacttt 116  Q
    |||| |||| ||| ||||| ||||||| || ||| ||||||||  ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  1020 atcatgtaattaactaaatattaaactattggatgcaaaattcaccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagacttt 921  T
Q  117 ttagagaaatcatagatg 134  Q
    |||||| |||||||||||    
T  920 ttagaggaatcatagatg 903  T

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Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 1015 - 1104
Alignment:
Q  128 atagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 217  Q
    |||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||||| | |||| ||| ||||||||||||||||||||||||    
T  1015 atagatacaagaactcttttgtatactagaagtacatcgttcctctttttatatgctataattatctctaacaagttcattatgatgata 1104  T

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Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 2557 - 2635
Alignment:
Q  15 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatactt 93  Q
    |||| ||| ||| ||||||||||||| || ||| ||||||||||| | ||||||||||| |||||||||||||||||||    
T  2557 atcaacacataattaattaaattttagacatttggatacaaaattatccaatgttaaacacataacaacaataatactt 2635  T

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