View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_14 (Length: 362)

Name: NF21683_high_14
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_14
NF21683_high_14
[»] chr1 (1 HSPs)
chr1 (22-362)||(21077996-21078348)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 21077996 - 21078348
Alignment:
Q  22 catcatcatcacgatcatgaagaaacatttttctcatcgttcttgttacgacaaccataaacaacaacaacaaaagaaagaatatgatcac--------- 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||             
T  21077996 catcatcatcacgatcatgaagaaacatttttctcttcgttcttgttacgacaaccataaacaacaacatcaaaagaaagaatatgatcaccatgatgct 21078095  T
Q  113 ---gatgagcagaaaaagaatattggttgtttaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggtggcc 209  Q
       ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21078096 actgatgatcagaaaaagaatattggttgttcaatatcaacaatgttcaaatgtgatttgtgccacagaatcttcacctccggcactgcactcggcggcc 21078195  T
Q  210 acaaatcacatcaccaccgctctgatcaccttgttcaacaacctctgaccaagaaacataaacatgatgttcttgatgatcataggaagcagaagcatgc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21078196 acaaatcacatcaccaccgctctgatcaccttgttcaacaacctctgaccaagaaacagaaacatgatgttcttgatgatcataggaagcagaagcatgc 21078295  T
Q  310 ttttcttgaccatgataaggtttttccttccaacatgagatcgcaccgcgaaa 362  Q
     ||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  21078296 atttcttgactatgataaggtttttccgtccaacatgagatcgcactgcgaaa 21078348  T

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