View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_21 (Length: 348)

Name: NF21683_high_21
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_21
NF21683_high_21
[»] chr1 (36 HSPs)
chr1 (7-348)||(31929157-31929498)
chr1 (74-348)||(28242601-28242877)
chr1 (149-348)||(19753021-19753222)
chr1 (149-348)||(13548601-13548803)
chr1 (61-160)||(31925498-31925597)
chr1 (64-279)||(41136096-41136305)
chr1 (61-160)||(194799-194899)
chr1 (71-157)||(7482014-7482101)
chr1 (74-161)||(37168591-37168679)
chr1 (74-163)||(47115468-47115558)
chr1 (150-323)||(2776273-2776446)
chr1 (14-51)||(13547793-13547830)
chr1 (84-129)||(34603869-34603914)
chr1 (7-45)||(31928389-31928427)
chr1 (148-185)||(16226595-16226632)
chr1 (148-185)||(16429375-16429412)
chr1 (148-185)||(27338948-27338985)
chr1 (148-185)||(28206887-28206924)
chr1 (148-185)||(51757961-51757998)
chr1 (61-108)||(13548842-13548890)
chr1 (148-184)||(28998070-28998106)
chr1 (148-184)||(29003786-29003822)
chr1 (61-108)||(42297815-42297862)
chr1 (148-178)||(2401056-2401086)
chr1 (150-180)||(9024106-9024136)
chr1 (148-178)||(9522044-9522074)
chr1 (61-131)||(12318342-12318412)
chr1 (141-178)||(16455965-16456002)
chr1 (141-178)||(28223203-28223240)
chr1 (148-185)||(47177789-47177826)
chr1 (61-108)||(13546935-13546983)
chr1 (146-178)||(19359118-19359150)
chr1 (61-104)||(19752937-19752981)
chr1 (61-108)||(19754747-19754795)
chr1 (149-185)||(31424837-31424873)
chr1 (146-178)||(41398014-41398046)
[»] chr4 (35 HSPs)
chr4 (61-348)||(54881581-54881868)
chr4 (61-160)||(55085235-55085332)
chr4 (61-160)||(35662718-35662816)
chr4 (75-160)||(8665704-8665787)
chr4 (74-158)||(41964709-41964794)
chr4 (84-161)||(379686-379764)
chr4 (75-160)||(8648443-8648526)
chr4 (87-160)||(26364545-26364616)
chr4 (179-348)||(35371816-35371991)
chr4 (91-162)||(12073703-12073775)
chr4 (64-137)||(26699256-26699329)
chr4 (61-130)||(41961677-41961746)
chr4 (74-158)||(46703845-46703929)
chr4 (105-160)||(27416791-27416844)
chr4 (85-124)||(12119854-12119893)
chr4 (148-185)||(11008383-11008420)
chr4 (141-178)||(12743710-12743747)
chr4 (148-185)||(16933963-16934000)
chr4 (148-185)||(22046501-22046538)
chr4 (148-185)||(22802552-22802589)
chr4 (141-178)||(52095144-52095181)
chr4 (86-125)||(38811030-38811069)
chr4 (148-178)||(4558627-4558657)
chr4 (148-178)||(15312637-15312667)
chr4 (151-185)||(22134432-22134466)
chr4 (61-127)||(34113067-34113133)
chr4 (141-178)||(4588301-4588338)
chr4 (141-178)||(5872164-5872201)
chr4 (148-185)||(14789248-14789285)
chr4 (148-185)||(16453784-16453821)
chr4 (149-178)||(16624286-16624315)
chr4 (148-185)||(22782552-22782589)
chr4 (149-178)||(46147177-46147206)
chr4 (152-184)||(10113343-10113375)
chr4 (87-131)||(33090173-33090217)
[»] chr6 (17 HSPs)
chr6 (147-348)||(17758389-17758590)
chr6 (74-160)||(26800883-26800969)
chr6 (84-162)||(2972719-2972798)
chr6 (148-185)||(26068210-26068247)
chr6 (148-185)||(33309317-33309354)
chr6 (147-178)||(18232637-18232668)
chr6 (148-178)||(13879058-13879088)
chr6 (148-178)||(17012490-17012520)
chr6 (148-178)||(17694683-17694713)
chr6 (148-178)||(25941988-25942018)
chr6 (141-178)||(14737847-14737884)
chr6 (149-178)||(16555242-16555271)
chr6 (149-178)||(16578284-16578313)
chr6 (149-178)||(16617067-16617096)
chr6 (149-178)||(16631798-16631827)
chr6 (61-163)||(25073841-25073940)
chr6 (148-184)||(25465420-25465456)
[»] chr8 (20 HSPs)
chr8 (149-348)||(40220951-40221151)
chr8 (74-161)||(40329071-40329159)
chr8 (84-161)||(3772497-3772572)
chr8 (75-163)||(40222019-40222105)
chr8 (96-137)||(15691105-15691146)
chr8 (7-54)||(44353284-44353331)
chr8 (7-45)||(11383384-11383422)
chr8 (148-185)||(14419010-14419047)
chr8 (148-178)||(4732014-4732044)
chr8 (148-178)||(16757092-16757122)
chr8 (148-178)||(28328227-28328257)
chr8 (148-178)||(28891083-28891113)
chr8 (151-185)||(43080087-43080121)
chr8 (148-185)||(15068460-15068497)
chr8 (148-185)||(15944975-15945012)
chr8 (148-185)||(18811190-18811227)
chr8 (141-178)||(41366400-41366437)
chr8 (92-162)||(10240423-10240490)
chr8 (150-178)||(13985650-13985678)
chr8 (146-178)||(18853443-18853475)
[»] chr3 (31 HSPs)
chr3 (149-348)||(43403341-43403541)
chr3 (75-160)||(41819310-41819396)
chr3 (61-160)||(46173638-46173738)
chr3 (84-348)||(1683776-1684027)
chr3 (74-160)||(46860770-46860857)
chr3 (61-120)||(5433774-5433833)
chr3 (84-137)||(36019154-36019207)
chr3 (7-45)||(55302714-55302752)
chr3 (148-185)||(456313-456350)
chr3 (141-178)||(37407038-37407075)
chr3 (148-178)||(3323827-3323857)
chr3 (7-45)||(4569331-4569369)
chr3 (148-178)||(6303630-6303660)
chr3 (141-178)||(9635905-9635943)
chr3 (148-178)||(10099906-10099936)
chr3 (151-185)||(10209559-10209593)
chr3 (148-178)||(10897324-10897354)
chr3 (149-178)||(6716870-6716899)
chr3 (148-185)||(10621341-10621378)
chr3 (148-185)||(10958138-10958175)
chr3 (148-185)||(18098985-18099022)
chr3 (141-178)||(22834789-22834826)
chr3 (149-178)||(23199920-23199949)
chr3 (148-185)||(25634282-25634319)
chr3 (141-178)||(32891439-32891476)
chr3 (148-185)||(42990705-42990742)
chr3 (148-185)||(43226483-43226520)
chr3 (141-178)||(44330966-44331003)
chr3 (75-108)||(47304550-47304583)
chr3 (149-178)||(47882720-47882749)
chr3 (150-178)||(29913787-29913815)
[»] chr7 (32 HSPs)
chr7 (141-348)||(6430477-6430685)
chr7 (141-348)||(4510150-4510358)
chr7 (141-348)||(4511992-4512200)
chr7 (74-163)||(2390581-2390670)
chr7 (75-160)||(8359104-8359190)
chr7 (84-160)||(48599123-48599199)
chr7 (84-142)||(29609036-29609094)
chr7 (86-162)||(22328181-22328255)
chr7 (216-323)||(25559744-25559851)
chr7 (74-160)||(3259290-3259372)
chr7 (7-45)||(30814249-30814287)
chr7 (148-185)||(7351466-7351503)
chr7 (145-178)||(9185434-9185467)
chr7 (148-185)||(38394422-38394459)
chr7 (61-108)||(22270226-22270274)
chr7 (61-108)||(30814675-30814723)
chr7 (146-178)||(49091454-49091486)
chr7 (147-177)||(3047046-3047076)
chr7 (148-178)||(3324619-3324649)
chr7 (148-178)||(7070114-7070144)
chr7 (148-178)||(20297798-20297828)
chr7 (148-178)||(25351671-25351701)
chr7 (148-178)||(25405733-25405763)
chr7 (148-178)||(40550265-40550295)
chr7 (148-185)||(21678494-21678531)
chr7 (148-185)||(24749023-24749060)
chr7 (156-185)||(24817178-24817207)
chr7 (148-185)||(28486001-28486038)
chr7 (141-178)||(48489780-48489817)
chr7 (146-178)||(24261603-24261635)
chr7 (25-53)||(30814286-30814314)
chr7 (61-108)||(32357897-32357945)
[»] scaffold0236 (1 HSPs)
scaffold0236 (85-163)||(10796-10872)
[»] chr2 (22 HSPs)
chr2 (84-162)||(7451424-7451502)
chr2 (85-160)||(17450880-17450956)
chr2 (146-348)||(6396814-6397016)
chr2 (149-348)||(16676590-16676790)
chr2 (84-144)||(24398382-24398442)
chr2 (84-160)||(33648473-33648548)
chr2 (84-131)||(42261311-42261358)
chr2 (141-178)||(11690837-11690874)
chr2 (148-185)||(36560956-36560993)
chr2 (61-157)||(30217843-30217934)
chr2 (148-178)||(2736524-2736554)
chr2 (148-182)||(10942341-10942375)
chr2 (148-182)||(10948210-10948244)
chr2 (148-178)||(19504160-19504190)
chr2 (148-178)||(20054592-20054622)
chr2 (148-178)||(22717065-22717095)
chr2 (148-178)||(34574972-34575002)
chr2 (148-178)||(39680365-39680395)
chr2 (151-184)||(35217786-35217819)
chr2 (141-181)||(723526-723566)
chr2 (146-178)||(19349052-19349084)
chr2 (146-178)||(25403425-25403457)
[»] scaffold0927 (1 HSPs)
scaffold0927 (84-160)||(3377-3454)
[»] chr5 (24 HSPs)
chr5 (91-158)||(27637403-27637471)
chr5 (61-131)||(317045-317115)
chr5 (84-160)||(16640737-16640811)
chr5 (141-178)||(534108-534145)
chr5 (148-185)||(10750125-10750162)
chr5 (141-174)||(13695481-13695514)
chr5 (147-178)||(31397273-31397304)
chr5 (148-178)||(15356672-15356702)
chr5 (149-183)||(20505664-20505698)
chr5 (148-178)||(23665472-23665502)
chr5 (148-178)||(23793085-23793115)
chr5 (148-178)||(27910860-27910890)
chr5 (151-185)||(31543163-31543197)
chr5 (149-178)||(9789003-9789032)
chr5 (148-177)||(18467111-18467140)
chr5 (149-178)||(25445807-25445836)
chr5 (149-178)||(29720732-29720761)
chr5 (86-130)||(8445995-8446039)
chr5 (146-178)||(27449597-27449629)
chr5 (61-108)||(28278569-28278617)
chr5 (146-178)||(37556904-37556936)
chr5 (146-178)||(43598507-43598539)
chr5 (146-178)||(43603999-43604031)
chr5 (146-178)||(43609491-43609523)
[»] scaffold0002 (1 HSPs)
scaffold0002 (84-131)||(490146-490193)
[»] scaffold0466 (2 HSPs)
scaffold0466 (7-45)||(6728-6766)
scaffold0466 (61-108)||(7606-7654)
[»] scaffold0014 (1 HSPs)
scaffold0014 (7-45)||(81033-81071)
[»] scaffold0127 (1 HSPs)
scaffold0127 (148-185)||(12690-12727)
[»] scaffold0209 (1 HSPs)
scaffold0209 (148-178)||(16867-16897)
[»] scaffold0140 (1 HSPs)
scaffold0140 (148-178)||(22552-22582)
[»] scaffold0491 (1 HSPs)
scaffold0491 (149-178)||(10942-10971)
[»] scaffold0087 (1 HSPs)
scaffold0087 (149-178)||(37108-37137)
[»] scaffold0005 (1 HSPs)
scaffold0005 (148-185)||(50445-50482)
[»] scaffold0197 (1 HSPs)
scaffold0197 (146-178)||(14589-14621)
[»] scaffold0176 (1 HSPs)
scaffold0176 (18-50)||(18632-18664)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 31929498 - 31929157
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgattttcaaggccgtaaaaatttgcttgtggttaatttggttgatggttgtcattgatacttgctcc 106  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31929498 tttggtgtttagaaaatgttggaatcgtggtacgattttcaaggctgtaaaaatttgcttgtggttaatttggttgatggttgtcattgatacttgctcc 31929399  T
Q  107 acgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgca 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31929398 acgaatctaaatttcattgacgtgaagtttgaaattgagaccgaattcacaacaattggcgtccaccgtgggacaaggggagaagtttttcaagtgtgca 31929299  T
Q  207 ccatgggtaccaaaggttacatcttggaggtggaaacaagcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  31929298 ccatgggtaccaaaggttacatcttggaggtggaaacaagcatgattcaatggaagtgtatggaagcattgaaggttgagatggtgatgttgatcaacct 31929199  T
Q  307 agcacaatcaaagaaggaaagtatgaagataggaggtcatga 348  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  31929198 agcacaatcaaagaaggaaagtatgaagagaggaggtcatga 31929157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 74 - 348
Target Start/End: Original strand, 28242601 - 28242877
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaatt-gagaccgaattcacaacaattggcgcccac 172  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  28242601 atttggttattggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaggtttggaatttgagaccgaattcacaacaattggcgcccac 28242700  T
Q  173 cgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagcatgattcaatggaagtgtatggaag 272  Q
    |||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  28242701 cgtggagcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagcatggttcaatgaaagtgtatggaag 28242800  T
Q  273 cattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtcatga 348  Q
    ||||||| |||||||  ||||||||| ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  28242801 cattgaaggttgagacggtgatgttggtcaacctagcacaatcaaagaaggttaagtgtgaagagaggaggtcatga 28242877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 149 - 348
Target Start/End: Original strand, 19753021 - 19753222
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttc-aagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagc 247  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  19753021 gaattcacaacaattggtgcccaccgtggggcaaggggagaagtttgtccaagtgtgcaccatgggcaccaaaggttacatcttggagatggaaacaagc 19753120  T
Q  248 atgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaa-gaaggaaagtatgaagataggaggtcat 346  Q
    |||||| ||||||||||||||||| ||||||| ||||| | |||||||||  |||||||||||||||||||  |||  |||| |||||| ||||||||||    
T  19753121 atgattgaatggaagtgtatggaatcattgaaggttgaaacagtgatgttagtcaacctagcacaatcaaataaagttaagtgtgaagagaggaggtcat 19753220  T
Q  347 ga 348  Q
    ||    
T  19753221 ga 19753222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 149 - 348
Target Start/End: Complemental strand, 13548803 - 13548601
Alignment:
Q  149 gaattcacaacaattggcgcccac-----cgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaac 243  Q
    ||||||||||||||||||||||||      ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |    
T  13548803 gaattcacaacaattggcgcccactgtgttgtgggacaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttggagatggaagc 13548704  T
Q  244 aagcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggagg 342  Q
    ||||||| |||||||| ||||||||||||||||||  |||||||  ||||   || ||| |||||||||||| |||||||  |||| |||||| ||||||    
T  13548703 aagcatggttcaatgggagtgtatggaagcattgatggttgagacggtga---tggtcatcctagcacaatcgaagaaggttaagtgtgaagagaggagg 13548607  T
Q  343 tcatga 348  Q
    ||||||    
T  13548606 tcatga 13548601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 31925597 - 31925498
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
T  31925597 ttgcttgtggttaatttggttgttggttgtcattgatacttgctctacgaatctaaatttcattaatgtgaagtttggaattcagaccgaattcacaaca 31925498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 279
Target Start/End: Original strand, 41136096 - 41136305
Alignment:
Q  64 cttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaatt 163  Q
    |||||||||| |||||||  ||||||||| | |||||| | |||||||||||||||||||||||||||  |||| | ||   |||||||| |||||||||    
T  41136096 cttgtggttattttggttattggttgtcaataatactttccccacgaatctaaatttcattgatgtgagatttggagtt---accgaatttacaacaatt 41136192  T
Q  164 ggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagcatgattcaatggaagt 263  Q
    ||| ||||||||||  ||| |||| |||||| |||||||| ||||||  ||||||||| | | ||||||||| ||| || ||||||| ||||||||||||    
T  41136193 ggctcccaccgtggagcaa-gggaaaagtttgtcaagtgtacaccat-tgtaccaaagttgatatcttggagatgg-aagaagcatggttcaatggaagt 41136289  T
Q  264 gtatggaagcattgaa 279  Q
    ||| | ||||||||||    
T  41136290 gtacgcaagcattgaa 41136305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 194799 - 194899
Alignment:
Q  61 ttgcttgtggttaa-tttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaac 159  Q
    |||||||||||| | |||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||| ||||  | ||||| |||||||||||||    
T  194799 ttgcttgtggtttactttggttgttggttgccattgatacttgctccgtgaatctaaatttcattgatgtgaggtttcgatttgagtccgaattcacaac 194898  T
Q  160 a 160  Q
    |    
T  194899 a 194899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 7482101 - 7482014
Alignment:
Q  71 ttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcaca 157  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||| |||| ||||||||||||    
T  7482101 ttaatttggttattggttgtcattgatacttgctccacgaatttaaattttattgatgtgaggtttggaatttgataccgaattcaca 7482014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 37168591 - 37168679
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtga-agtttgaaattgagaccgaattcacaacaa 161  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||||||| || | || ||| |||||| ||||||||||||||    
T  37168591 atttggttattggttgtcattgatacttgctctacgaatctaaatttcattgatgcgagatttggaatttgagatcgaattcacaacaa 37168679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 47115468 - 47115558
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaa-ttgagaccgaattcacaacaatt 163  Q
    ||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||  |||||||||| ||||    
T  47115468 atttgattgttgattgtcattgatacttgctccacgaatctaaattttattgatgtgagttttgaaatttgagaatgaattcacaataatt 47115558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 323
Target Start/End: Complemental strand, 2776446 - 2776273
Alignment:
Q  150 aattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagcat 249  Q
    ||||||||| ||||||||||||| |  ||  ||||||| |||||| |||||||  ||  |||   ||||||| |||||||||| ||||||| |||| |||    
T  2776446 aattcacaataattggcgcccactgcagggtaaggggataagtttgtcaagtgatcaatatgatcaccaaagattacatcttgaaggtggagacaaacat 2776347  T
Q  250 gattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg 323  Q
    |  |||| | ||||||||||| ||||| |||| | ||   ||| ||| | ||||||||||||||||||||||||    
T  2776346 ggatcaacgaaagtgtatggaggcatttaaaggtaaggcggtgttgtcggtcaacctagcacaatcaaagaagg 2776273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13547830 - 13547793
Alignment:
Q  14 tttggaaaatgttggaatcgtggcacgattttcaaggc 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13547830 tttggaaaatgttggaatcgtggcacgattttcaaggc 13547793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 34603869 - 34603914
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgt 129  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  34603869 tggttgtcattgatacttgctccacaaatctagatttcattgatgt 34603914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 31928427 - 31928389
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  31928427 tttggtgtttggaaaatgttggaatcgtgacacgatttt 31928389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 16226595 - 16226632
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  16226595 cgaattcacaacaattggcgcccaccgtggggcaaggg 16226632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 16429375 - 16429412
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  16429375 cgaattcacaacaattggcgcccaccgtggggcaaggg 16429412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 27338985 - 27338948
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27338985 cgaattcacaacaattggcgcccaccgtggggcaaggg 27338948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 28206924 - 28206887
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28206924 cgaattcacaacaattggcgcccaccgtggggcaaggg 28206887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 51757961 - 51757998
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  51757961 cgaattcacaacaattggcgcccaccgtggggcaaggg 51757998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 13548890 - 13548842
Alignment:
Q  61 ttgcttgtggttaa-tttggttgatggttgtcattgatacttgctccac 108  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||    
T  13548890 ttgcttgtggtttactttggttgttggttgtcattgatacttgctccac 13548842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 28998106 - 28998070
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaagg 184  Q
    ||||||||||||||||||||||||||||||| |||||    
T  28998106 cgaattcacaacaattggcgcccaccgtggggcaagg 28998070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 29003822 - 29003786
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaagg 184  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29003822 cgaattcacaacaattggcgcccaccgtggggcaagg 29003786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 42297862 - 42297815
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccac 108  Q
    |||||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  42297862 ttgcttatggttaatttggttgttggttgccattgatactttctccac 42297815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 2401086 - 2401056
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  2401086 cgaattcacaacaattggcgcccaccgtggg 2401056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 9024106 - 9024136
Alignment:
Q  150 aattcacaacaattggcgcccaccgtgggac 180  Q
    |||||||||||||||||||||||||||||||    
T  9024106 aattcacaacaattggcgcccaccgtgggac 9024136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 9522044 - 9522074
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  9522044 cgaattcacaacaattggcgcccaccgtggg 9522074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 12318412 - 12318342
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtga 131  Q
    |||| |||| ||| |||||||  |||||| ||||||||||||| ||| | ||| |||||||||||||||||    
T  12318412 ttgcgtgtgcttattttggttattggttgccattgatacttgccccatgcatccaaatttcattgatgtga 12318342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 16455965 - 16456002
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  16455965 ttgagtccgaattcacaacaattggcgcgcaccgtggg 16456002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 28223240 - 28223203
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28223240 ttgagtccgaattcacaacaattggcgtccaccgtggg 28223203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 47177789 - 47177826
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  47177789 cgaattcacaacaattgccgcccaccgtggggcaaggg 47177826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 13546983 - 13546935
Alignment:
Q  61 ttgcttgtggttaa-tttggttgatggttgtcattgatacttgctccac 108  Q
    |||||||||||| | |||||||| |||||| ||||||||||||||||||    
T  13546983 ttgcttgtggtttactttggttgttggttgccattgatacttgctccac 13546935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 19359118 - 19359150
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  19359118 accggattcacaacaattggcgcccaccgtggg 19359150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 19752937 - 19752981
Alignment:
Q  61 ttgcttgtggttaattt-ggttgatggttgtcattgatacttgct 104  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||    
T  19752937 ttgcttgtggttaattttggttgttggttgccattgatacttgct 19752981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 19754747 - 19754795
Alignment:
Q  61 ttgcttgtggttaatttg-gttgatggttgtcattgatacttgctccac 108  Q
    |||||||||||||||||  ||||  ||||||||||||||||||||||||    
T  19754747 ttgcttgtggttaattttagttggaggttgtcattgatacttgctccac 19754795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 31424873 - 31424837
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  31424873 gaattcgcaacaattggcgcccaccgtggggcaaggg 31424837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 41398046 - 41398014
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  41398046 accggattcacaacaattggcgcccaccgtggg 41398014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 61 - 348
Target Start/End: Original strand, 54881581 - 54881868
Alignment:
Q  61 ttgcttgtggttaattt-ggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaac 159  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||||    
T  54881581 ttgcttgtggtttattttggttgttggttgtcattgatacttgctccacgaatataaatttcattgatgtgaagtttggaattga--ccgaattcacaac 54881678  T
Q  160 aattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagcatgattcaatgg 259  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |    
T  54881679 aattggcgcccactgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttggagatggaaacaagcatggttcaatag 54881778  T
Q  260 aagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtcatga 348  Q
    |||||||||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||||  |||| | |||| ||||||||||||    
T  54881779 aagtgtatggaagcattgaaggttgagacggtgatgttggtcaacctagcacaatcaaagaaggttaagtgtaaagagaggaggtcatga 54881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 55085332 - 55085235
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||| |||||||||||    
T  55085332 ttgcttgtagttaatttgattgttggttgtcattgatacttgctccatgaatctaaatttcattgatgtgaagtttggaatt--gaccaaattcacaaca 55085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 35662718 - 35662816
Alignment:
Q  61 ttgcttgtggttaattt-ggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaac 159  Q
    |||||| |||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  35662718 ttgcttatggttaattttggttgttggttgccattgatacttgctccacaaatctaaatttcattgatgtgaagtttggaatt--gaccgaattcacaac 35662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 8665704 - 8665787
Alignment:
Q  75 tttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  8665704 tttggttgttggttgccattgatacttgctcgacgaatctaaatttcattgaagtgaagtttgaaatt--gaccgaattcacaaca 8665787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 41964709 - 41964794
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaa 158  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  41964709 atttgattgttggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttggaatttgagaccgaattcacaa 41964794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 379686 - 379764
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaacaa 161  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  379686 tggttgccactgatacttgctccacgaatctaaatttcattgatgtgaggtttggaatttgagaccgaattcacaacaa 379764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 8648443 - 8648526
Alignment:
Q  75 tttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||||  ||||||||||||||||    
T  8648443 tttggttgttggttgccattgatacttgctcgacgaatctaaatttcattgaagtgaagtttgtaatt--gaccgaattcacaaca 8648526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 26364545 - 26364616
Alignment:
Q  87 ttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||| |||||||||    
T  26364545 ttgtcattgatacttgctccacgaatctaaatttcattgatgtaaagtttggaatt--gaccgagttcacaaca 26364616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 348
Target Start/End: Complemental strand, 35371991 - 35371816
Alignment:
Q  179 acaaggggagaagtttttcaagtgtgcaccatgggtaccaaa----ggttacatcttggaggtggaaacaagcatgattcaatggaagtgtatggaagc- 273  Q
    |||||||  ||||||| |||||||||||||||||||||||||    | | | || |||||| ||||| ||| |||| ||||| ||||||||||||||||     
T  35371991 acaagggaggaagtttgtcaagtgtgcaccatgggtaccaaataaagttgatatattggagatggaagcaaacatggttcaacggaagtgtatggaagca 35371892  T
Q  274 attgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtcatga 348  Q
    |||||| | ||||   |||||||  | |||||||||||  |||||||||| |||||||||||| ||||||||||||    
T  35371891 attgaagggtgaggcggtgatgtcaagcaacctagcacgttcaaagaaggtaaagtatgaagagaggaggtcatga 35371816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 12073703 - 12073775
Alignment:
Q  91 cattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaa-ttgagaccgaattcacaacaat 162  Q
    |||||||||||||||||| ||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  12073703 cattgatacttgctccacaaatttaaatttcattggtgtgaggtttgaaatttgagaccgaattcacaacaat 12073775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 26699329 - 26699256
Alignment:
Q  64 cttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttg 137  Q
    ||||||||||||||||||  |||||| ||||||||| ||  ||||||||||||||||||||||||||| |||||    
T  26699329 cttgtggttaatttggttattggttgccattgatacctgtcccacgaatctaaatttcattgatgtgaggtttg 26699256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 41961677 - 41961746
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtg 130  Q
    |||||||| |||  |||||||  |||||||||||||||||||| ||||  ||||||||||||||||||||    
T  41961677 ttgcttgtagtttttttggttattggttgtcattgatacttgccccacagatctaaatttcattgatgtg 41961746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 46703845 - 46703929
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaa 158  Q
    ||||||||  ||||||| |||||||||| ||||||||||||||| ||| |||||||||||||| ||| || ||||| |||||||||    
T  46703845 atttggttattggttgttattgatacttactccacgaatctaaa-ttctttgatgtgaagtttggaatttaagaccaaattcacaa 46703929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 27416844 - 27416791
Alignment:
Q  105 ccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    |||||||||||||||| |||||||||||||||| ||||  ||||||||||||||||    
T  27416844 ccacgaatctaaattttattgatgtgaagtttggaatt--gaccgaattcacaaca 27416791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 12119854 - 12119893
Alignment:
Q  85 ggttgtcattgatacttgctccacgaatctaaatttcatt 124  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  12119854 ggttgtcattgatacttgctccatgaatctaaatttcatt 12119893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 11008420 - 11008383
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  11008420 cgaattcacaacaattggcgcccaccgtggggcaaggg 11008383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 12743747 - 12743710
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  12743747 ttgagtccgaattcacaacaattggcgcccaccgtggg 12743710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 16934000 - 16933963
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  16934000 cgaattcacaacaattggcgcccaccgtggggcaaggg 16933963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 22046538 - 22046501
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22046538 cgaattcacaacaattggcgcccaccgtggggcaaggg 22046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 22802589 - 22802552
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  22802589 cgaattcacaacaattggcgcccaccgtggggcaaggg 22802552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 52095181 - 52095144
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  52095181 ttgagtccgaattcacaacaattggcgcccaccgtggg 52095144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 38811069 - 38811030
Alignment:
Q  86 gttgtcattgatacttgctccacgaatctaaatttcattg 125  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  38811069 gttgtcattgatacttgccccgcgaatctaaatttcattg 38811030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 4558627 - 4558657
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  4558627 cgaattcacaacaattggcgcccaccgtggg 4558657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 15312637 - 15312667
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  15312637 cgaattcacaacaattggcgcccaccgtggg 15312667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 22134466 - 22134432
Alignment:
Q  151 attcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||||||||||| ||||||    
T  22134466 attcacaacaattggcgcccaccgtggggcaaggg 22134432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 34113067 - 34113133
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgat 127  Q
    ||||||||||||| |||||||  || ||||||||||| ||| | ||||  |||||||||||||||||    
T  34113067 ttgcttgtggttattttggttattgattgtcattgattcttaccccacacatctaaatttcattgat 34113133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 4588301 - 4588338
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  4588301 ttgagtccgaattcacaacaattggcacccaccgtggg 4588338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 5872164 - 5872201
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  5872164 ttgagtccggattcacaacaattggcgcccaccgtggg 5872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 14789285 - 14789248
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  14789285 cgaattcgcaacaattggcgcccaccgtggggcaaggg 14789248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 16453784 - 16453821
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  16453784 cgaattcacaacaattggtgcccaccgtggggcaaggg 16453821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 16624286 - 16624315
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  16624286 gaattcacaacaattggcgcccaccgtggg 16624315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 22782589 - 22782552
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  22782589 cgaattcgcaacaattggcgcccaccgtggggcaaggg 22782552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 46147206 - 46147177
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  46147206 gaattcacaacaattggcgcccaccgtggg 46147177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 10113343 - 10113375
Alignment:
Q  152 ttcacaacaattggcgcccaccgtgggacaagg 184  Q
    ||||||||||||||||||||||||||| |||||    
T  10113343 ttcacaacaattggcgcccaccgtggggcaagg 10113375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 33090173 - 33090217
Alignment:
Q  87 ttgtcattgatacttgctccacgaatctaaatttcattgatgtga 131  Q
    ||||||||||||||| | |||| |||| |||||||||||||||||    
T  33090173 ttgtcattgatacttcccccacaaatcaaaatttcattgatgtga 33090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 147 - 348
Target Start/End: Original strand, 17758389 - 17758590
Alignment:
Q  147 ccgaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaag 246  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17758389 ccgaattcacaacaattggcgcccaccgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtactaaaggttacatcttggaggtggaaacaag 17758488  T
Q  247 catgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaaggaaagtatgaagataggaggtcat 346  Q
    |||| || ||||||||||||||||||||||||| |||||||  ||||||||| ||||||||||| |||||||||| |  |   |||||||||||||||||    
T  17758489 catggttgaatggaagtgtatggaagcattgaaggttgagacggtgatgttggtcaacctagcagaatcaaagaaagttaaggtgaagataggaggtcat 17758588  T
Q  347 ga 348  Q
    ||    
T  17758589 ga 17758590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 26800883 - 26800969
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  26800883 atttggttattggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttgaatttgagtccgaattcacaaca 26800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 2972798 - 2972719
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaacaat 162  Q
    |||||| ||||||||||||||| |||||| |||||||||||||||||| |||| ||| |||||||| |||||||||||||    
T  2972798 tggttgccattgatacttgctcaacgaatttaaatttcattgatgtgatgtttggaatttgagaccaaattcacaacaat 2972719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 26068247 - 26068210
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26068247 cgaattcacaacaattggcgcccaccgtggggcaaggg 26068210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 33309317 - 33309354
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33309317 cgaattcacaacaattggcgcccaccgtggggcaaggg 33309354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 18232668 - 18232637
Alignment:
Q  147 ccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||||    
T  18232668 ccgaattcacaacaattggcgcccaccgtggg 18232637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 13879058 - 13879088
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  13879058 cgaattcacaacaattggcgcccaccgtggg 13879088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 17012490 - 17012520
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  17012490 cgaattcacaacaattggcgcccaccgtggg 17012520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 17694713 - 17694683
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  17694713 cgaattcacaacaattggcgcccaccgtggg 17694683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 25941988 - 25942018
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  25941988 cgaattcacaacaattggcgcccaccgtggg 25942018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 14737847 - 14737884
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  14737847 ttgaaaccggattcacaacaattggcgcccaccgtggg 14737884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 16555242 - 16555271
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  16555242 gaattcacaacaattggcgcccaccgtggg 16555271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 16578313 - 16578284
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  16578313 gaattcacaacaattggcgcccaccgtggg 16578284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 16617067 - 16617096
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  16617067 gaattcacaacaattggcgcccaccgtggg 16617096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 16631798 - 16631827
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  16631798 gaattcacaacaattggcgcccaccgtggg 16631827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 25073841 - 25073940
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    ||||||||||||| ||| |||  || || |||||||||||||  ||||||||||||| || ||| ||| ||  |||| |||||   ||||||||||||||    
T  25073841 ttgcttgtggttatttttgttattgattatcattgatacttgtcccacgaatctaaactttattaatgcgagatttggaattg---ccgaattcacaaca 25073937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 25465456 - 25465420
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaagg 184  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  25465456 cgaattcacaacaattggcacccaccgtggggcaagg 25465420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 149 - 348
Target Start/End: Complemental strand, 40221151 - 40220951
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagca 248  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40221151 gaattcacaacaattggcgcccactgtggggcaaggggggaagtttgtcaagtgtgcaccatggttaccaaaggttacatcttggaggtggaaacaagca 40221052  T
Q  249 tgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtcatg 347  Q
    || ||||||||||||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||||||||||  |||| |||||| |||||||||||    
T  40221051 tggttcaatggaagtgtatgaaagcattgaaggttgagacggtgatgttggtcaacctagcacaatcaaagaaggttaagtgtgaagagaggaggtcatg 40220952  T
Q  348 a 348  Q
    |    
T  40220951 a 40220951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 40329071 - 40329159
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaa-ttgagaccgaattcacaacaa 161  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  40329071 atttggttgttggttgtcattgatacttgctctacgaatctaaatttcattgatgtgaggtttaaaatttgagaccgaattcacaacaa 40329159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 3772497 - 3772572
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaa 161  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||  |||||||||||||||||    
T  3772497 tggttgccattgatacctgctccacgaatctaaatttcattgatgtgaggtttggaatt--gaccgaattcacaacaa 3772572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 40222019 - 40222105
Alignment:
Q  75 tttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaatt 163  Q
    |||||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||    |||||||||||||||||    
T  40222019 tttggttgttggttgccattgatactttctccacaaatctaaatttcattgatgtgaagtttggaatt--tgccgaattcacaacaatt 40222105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 15691105 - 15691146
Alignment:
Q  96 atacttgctccacgaatctaaatttcattgatgtgaagtttg 137  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  15691105 atacttgctccacgaatctaaatttcattgatgtgaggtttg 15691146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 44353284 - 44353331
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgattttcaaggccgt 54  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  44353284 tttggtgtttggaaaatgttggaaccgtgacacgaatttcaaggccgt 44353331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 11383384 - 11383422
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  11383384 tttggtgtttggaaaatgttggaatcgtgacacgatttt 11383422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 14419047 - 14419010
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14419047 cgaattcacaacaattggcgcccaccgtggggcaaggg 14419010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 4732014 - 4732044
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  4732014 cgaattcacaacaattggcgcccaccgtggg 4732044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 16757122 - 16757092
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  16757122 cgaattcacaacaattggcgcccaccgtggg 16757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 28328227 - 28328257
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  28328227 cgaattcacaacaattggcgcccaccgtggg 28328257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 28891083 - 28891113
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  28891083 cgaattcacaacaattggcgcccaccgtggg 28891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 43080087 - 43080121
Alignment:
Q  151 attcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||||||||||| ||||||    
T  43080087 attcacaacaattggcgcccaccgtggggcaaggg 43080121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 15068460 - 15068497
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  15068460 cgaattcgcaacaattggcgcccaccgtggggcaaggg 15068497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 15944975 - 15945012
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  15944975 cgaattcacaacaattggcgcccacagtggggcaaggg 15945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 18811190 - 18811227
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  18811190 cgaattcgcaacaattggcgcccaccgtggggcaaggg 18811227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 41366437 - 41366400
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  41366437 ttgagtccgaattcacaataattggcgcccaccgtggg 41366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 10240423 - 10240490
Alignment:
Q  92 attgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaat 162  Q
    ||||||| ||||||||| ||| |||||| |||||||||||| |||| | ||   |||||||||||||||||    
T  10240423 attgatatttgctccacaaatttaaattacattgatgtgaaatttggagtt---accgaattcacaacaat 10240490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 13985678 - 13985650
Alignment:
Q  150 aattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||    
T  13985678 aattcacaacaattggcgcccaccgtggg 13985650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 18853443 - 18853475
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  18853443 accggattcacaacaattggcgcccaccgtggg 18853475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 149 - 348
Target Start/End: Complemental strand, 43403541 - 43403341
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagca 248  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  43403541 gaattcacaacaattggcgcccaccgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttcgagatggaaacaagca 43403442  T
Q  249 tgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtcatg 347  Q
    || || || |||||||||||||||||||||| |||||||  |||||||||  |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  43403441 tggttgaacggaagtgtatggaagcattgaaggttgagacggtgatgttggccaacctagcacaatcaaagaaggttaagtatgaagagaggaggtcatg 43403342  T
Q  348 a 348  Q
    |    
T  43403341 a 43403341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 41819396 - 41819310
Alignment:
Q  75 tttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaa-ttgagaccgaattcacaaca 160  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  41819396 tttggttgttggttgccattgatacttgctccacgaatctaaatttcattgatgtgaggtttgaaatttgagacccaattcacaaca 41819310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 46173638 - 46173738
Alignment:
Q  61 ttgcttgtggttaa-tttggttgatggttgtcattgatacttgctccac--gaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcaca 157  Q
    |||||||||||| | |||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  46173638 ttgcttgtggtttactttggttgttggttgccattgatacttgctccacacgaatctaaatttcattgatgtgaagtttggaatt--gaccgaattcaca 46173735  T
Q  158 aca 160  Q
    |||    
T  46173736 aca 46173738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 348
Target Start/End: Original strand, 1683776 - 1684027
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaattggcgcccaccgtgggacaag 183  Q
    ||||||||||||||  |||  ||||  |||||||||||||||||||||  |||  | ||   ||||||||||||| |||||||  |||||||||   |||    
T  1683776 tggttgtcattgatgtttgtcccacacatctaaatttcattgatgtgagatttagagtt---accgaattcacaataattggcatccaccgtggataaag 1683872  T
Q  184 gggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagcatgattcaatggaagtgtatggaagcattgaaagtt 283  Q
      ||||||||| ||||||| |||||||||          ||||||||||||| |||||  || ||||||| || |||||||||||||||||||||| | |    
T  1683873 atgagaagtttgtcaagtgagcaccatgg----------ttacatcttggagatggaataaaacatgatt-aacggaagtgtatggaagcattgaagggt 1683961  T
Q  284 gagatagtgatgttgatcaacctagcacaatcaaagaag-gaaagtatgaagataggaggtcatga 348  Q
     |||  ||||||||||  |||||||||||||||||||||  ||||| | |||| ||||||||||||    
T  1683962 aagacggtgatgttgagaaacctagcacaatcaaagaagataaagtgttaagaaaggaggtcatga 1684027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 46860770 - 46860857
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaaca 160  Q
    ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||    
T  46860770 atttggttattggttgccattgatatttgctccacgaatctaaatttcattgatgtgatgtttggaatttgagatcgaattcacaaca 46860857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 5433833 - 5433774
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaattt 120  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  5433833 ttgcttgtggttattttggttattggttgtcattgatacttgctccacgaatctaaattt 5433774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 36019154 - 36019207
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttg 137  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  36019154 tggttgtgattgatacttgctccacgaatctaaatttcattgatatgaagtttg 36019207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 55302752 - 55302714
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  55302752 tttggtgtttggaaaatgttggaatcgtgacacgatttt 55302714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 456313 - 456350
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  456313 cgaattcacaacaattggcgcccaccgtggggcaaggg 456350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 37407038 - 37407075
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37407038 ttgaggccgaattcacaacaattggcgcccaccgtggg 37407075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 3323827 - 3323857
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  3323827 cgaattcacaacaattggcgcccaccgtggg 3323857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 4569331 - 4569369
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  4569331 tttggtgtttgaaaaatgttggaatcgtgacacgatttt 4569369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 6303630 - 6303660
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  6303630 cgaattcacaacaattggcgcccaccgtggg 6303660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 9635943 - 9635905
Alignment:
Q  141 ttgagaccg-aattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  9635943 ttgagaccggaattcacaacaattggcgcccaccgtggg 9635905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 10099936 - 10099906
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  10099936 cgaattcacaacaattggcgcccaccgtggg 10099906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 10209559 - 10209593
Alignment:
Q  151 attcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||||||||||| ||||||    
T  10209559 attcacaacaattggcgcccaccgtggggcaaggg 10209593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 10897324 - 10897354
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  10897324 cgaattcacaacaattggcgcccaccgtggg 10897354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 6716870 - 6716899
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  6716870 gaattcacaacaattggcgcccaccgtggg 6716899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 10621378 - 10621341
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  10621378 cgaattcacaacaattggcgcccactgtggggcaaggg 10621341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 10958175 - 10958138
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  10958175 cgaattcacaacaattggtgcccaccgtggggcaaggg 10958138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 18099022 - 18098985
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  18099022 cgaattcccaacaattggcgcccaccgtggggcaaggg 18098985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 22834826 - 22834789
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  22834826 ttgagtccgaattcacaacaattggcgcccatcgtggg 22834789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 23199949 - 23199920
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  23199949 gaattcacaacaattggcgcccaccgtggg 23199920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 25634282 - 25634319
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  25634282 cgaattcacaacaattggcgtccaccgtggggcaaggg 25634319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 32891439 - 32891476
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  32891439 ttgagtccgaagtcacaacaattggcgcccaccgtggg 32891476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 42990705 - 42990742
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  42990705 cgaattcgcaacaattggcgcccaccgtggggcaaggg 42990742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 43226483 - 43226520
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  43226483 cgaattcgcaacaattggcgcccaccgtggggcaaggg 43226520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 44330966 - 44331003
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  44330966 ttgagtccgaattcacaacaattggcgcccactgtggg 44331003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 47304550 - 47304583
Alignment:
Q  75 tttggttgatggttgtcattgatacttgctccac 108  Q
    |||||||| |||||||||||||||||||||||||    
T  47304550 tttggttgttggttgtcattgatacttgctccac 47304583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 47882749 - 47882720
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  47882749 gaattcacaacaattggcgcccaccgtggg 47882720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 29913815 - 29913787
Alignment:
Q  150 aattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||    
T  29913815 aattcacaacaattggcgcccaccgtggg 29913787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 141 - 348
Target Start/End: Original strand, 6430477 - 6430685
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtgga 240  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  6430477 ttgagtccgaattcacaacaattggcacccaccgtggggcaaggggagaagtttgtcaagtgtgcaccatgggtaccaaaggttacatcttggagatgga 6430576  T
Q  241 aacaagcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagatagg 339  Q
    |||||||||| || |||||||||||||| || |||| || |||||||  ||||||||  ||||||||||||||||||||||||  |||| |||||| |||    
T  6430577 aacaagcatggttgaatggaagtgtatgaaaacattaaaggttgagacggtgatgttagtcaacctagcacaatcaaagaaggttaagtgtgaagagagg 6430676  T
Q  340 aggtcatga 348  Q
    |||||||||    
T  6430677 aggtcatga 6430685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 141 - 348
Target Start/End: Complemental strand, 4510358 - 4510150
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtgga 240  Q
    ||||| ||||||||||||||||| ||  ||||||| || ||||||||||||||| ||||||||||| ||||||||  ||| ||||||||||| || ||||    
T  4510358 ttgagtccgaattcacaacaattagccaccaccgttgggcaaggggagaagtttgtcaagtgtgcagcatgggtaataaatgttacatcttgaagatgga 4510259  T
Q  241 aacaagcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagatagg 339  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||  ||||||||  ||||||||||||||||||||||||  |||| |||||| |||    
T  4510258 aacaagcatggttgaatggaagtgtatggaagcattgaaggttgagacggtgatgttagtcaacctagcacaatcaaagaaggttaagtgtgaagagagg 4510159  T
Q  340 aggtcatga 348  Q
    |||||||||    
T  4510158 aggtcatga 4510150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 141 - 348
Target Start/End: Complemental strand, 4512200 - 4511992
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtgga 240  Q
    ||||| ||||||||||||||||| ||  ||||||| || ||||||||||||||| ||||||||||| ||||||||  ||| ||||||||||| || ||||    
T  4512200 ttgagtccgaattcacaacaattagccaccaccgttgggcaaggggagaagtttgtcaagtgtgcagcatgggtaataaatgttacatcttgaagatgga 4512101  T
Q  241 aacaagcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagatagg 339  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||  ||||||||  ||||||||||||||||||||||||  |||| |||||| |||    
T  4512100 aacaagcatggttgaatggaagtgtatggaagcattgaaggttgagacggtgatgttagtcaacctagcacaatcaaagaaggttaagtgtgaagagagg 4512001  T
Q  340 aggtcatga 348  Q
    |||||||||    
T  4512000 aggtcatga 4511992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 2390581 - 2390670
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaatt 163  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||  |||||||||||||||||    
T  2390581 atttggttattggttgtcattgatacttgctccactaatctaaatttcattgatgtgaggtttggatttgaatccgaattcacaacaatt 2390670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 8359190 - 8359104
Alignment:
Q  75 tttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaaca 160  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||    
T  8359190 tttgattgttggttgccattgatacttgctccacgaatctaaatttcattggtgtgaggtttggaatttgagaccgaattcacaaca 8359104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 48599199 - 48599123
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||| |||||| ||||    
T  48599199 tggttgtcattgatacttgctccacgaatctaaattttattgatgtaaagttcggaattgagaccaaattcaaaaca 48599123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 29609036 - 29609094
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  29609036 tggttgtcattgatacttgctccacgaatctaaatttcattaatgtgaggtttggaatt 29609094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 22328255 - 22328181
Alignment:
Q  86 gttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaat 162  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  |||| ||||  ||||||||||||||||||    
T  22328255 gttgtcattaatacttactccacgaatctaaatttcattgatgtgagatttggaatt--gaccgaattcacaacaat 22328181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 323
Target Start/End: Original strand, 25559744 - 25559851
Alignment:
Q  216 ccaaaggttacatcttggaggtggaaacaagcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatc 315  Q
    ||||||||||||||||||||||||| |||| ||||  |||||| || |||||||| ||| | || | ||||   ||||||| | ||||||||||||||||    
T  25559744 ccaaaggttacatcttggaggtggagacaaacatggatcaatgaaaatgtatggaggcagttaagggtgaggcggtgatgtcggtcaacctagcacaatc 25559843  T
Q  316 aaagaagg 323  Q
    ||||||||    
T  25559844 aaagaagg 25559851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 3259290 - 3259372
Alignment:
Q  74 atttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| |||||||| ||    || ||| ||||||||||||||||||||    
T  3259290 atttggttattggttgtcattgatacttgctccccgaatctaaagttcattgaggt----ttggaatttgagaccgaattcacaaca 3259372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 30814249 - 30814287
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  30814249 tttggtgtttggaaaatgttggaatcgtgacacgatttt 30814287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 7351503 - 7351466
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7351503 cgaattcacaacaattggcgcccaccgtggggcaaggg 7351466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 9185434 - 9185467
Alignment:
Q  145 gaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||||||    
T  9185434 gaccgaattcacaacaattggcgcccaccgtggg 9185467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 38394422 - 38394459
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  38394422 cgaattcacaacaattggcgcccaccgtggggcaaggg 38394459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 22270226 - 22270274
Alignment:
Q  61 ttgcttgtggttaattt-ggttgatggttgtcattgatacttgctccac 108  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  22270226 ttgcttgtggttaattttggttgttggttgccattgatacttgctccac 22270274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 30814675 - 30814723
Alignment:
Q  61 ttgcttgtggttaattt-ggttgatggttgtcattgatacttgctccac 108  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  30814675 ttgcttgtggttaattttggttgttggttgccattgatacttgctccac 30814723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 49091486 - 49091454
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||||    
T  49091486 accgaattcacaacaattggcgcccaccgtggg 49091454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 3047076 - 3047046
Alignment:
Q  147 ccgaattcacaacaattggcgcccaccgtgg 177  Q
    |||||||||||||||||||||||||||||||    
T  3047076 ccgaattcacaacaattggcgcccaccgtgg 3047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 3324649 - 3324619
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  3324649 cgaattcacaacaattggcgcccaccgtggg 3324619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 7070114 - 7070144
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  7070114 cgaattcacaacaattggcgcccaccgtggg 7070144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 20297798 - 20297828
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  20297798 cgaattcacaacaattggcgcccaccgtggg 20297828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 25351671 - 25351701
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  25351671 cgaattcacaacaattggcgcccaccgtggg 25351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 25405733 - 25405763
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  25405733 cgaattcacaacaattggcgcccaccgtggg 25405763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 40550265 - 40550295
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  40550265 cgaattcacaacaattggcgcccaccgtggg 40550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 21678494 - 21678531
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  21678494 cgaattcacaacaattggcgcccaccatggggcaaggg 21678531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 24749023 - 24749060
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  24749023 cgaattcacaacaattggcccccaccgtggggcaaggg 24749060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 24817207 - 24817178
Alignment:
Q  156 caacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||    
T  24817207 caacaattggcgcccaccgtgggacaaggg 24817178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 28486001 - 28486038
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  28486001 cgaattcacaacaattggcgcccaccatggggcaaggg 28486038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 48489780 - 48489817
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  48489780 ttgagtccgaattcacaacgattggcgcccaccgtggg 48489817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 24261603 - 24261635
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  24261603 accggattcacaacaattggcgcccaccgtggg 24261635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 30814286 - 30814314
Alignment:
Q  25 ttggaatcgtggcacgattttcaaggccg 53  Q
    |||||||||||||||||||||||||||||    
T  30814286 ttggaatcgtggcacgattttcaaggccg 30814314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 32357945 - 32357897
Alignment:
Q  61 ttgcttgtggttaa-tttggttgatggttgtcattgatacttgctccac 108  Q
    |||||||||||| | |||||||| |||||||||||||||||| ||||||    
T  32357945 ttgcttgtggtttactttggttgttggttgtcattgatacttactccac 32357897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 10796 - 10872
Alignment:
Q  85 ggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaatt 163  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  10796 ggttgtcattgatactttctccacaaatctaaatttcattgatgtgaggtttgaaatt--gaccgaattcacaacaatt 10872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 7451424 - 7451502
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaacaat 162  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||  |||| | ||||| ||||||||||||||||    
T  7451424 tggttgtcattgaaacttgctccacgaatctaaatttcattgatgtgagatttggatttgagtccgaattcacaacaat 7451502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 17450880 - 17450956
Alignment:
Q  85 ggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaaca 160  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||    
T  17450880 ggttgtcattgatacttgcgtcacgaatctaaatttcattggtgtgaggtttagaatttgagaccgaattcacaaca 17450956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 348
Target Start/End: Complemental strand, 6397016 - 6396814
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaa 245  Q
    ||||||||||||||||| ||| ||||| ||| | |||||| ||||  ||  |||||| ||| ||||| |||||||||||||||||||||| || || |||    
T  6397016 accgaattcacaacaatcggcacccactgtgaggcaaggg-agaaacttgacaagtgagcatcatggttaccaaaggttacatcttggagatgaaaccaa 6396918  T
Q  246 gcatgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtc 344  Q
     |||| ||||| | || ||||||||| |||||||   | ||   |||||||    ||||||||||||||||||||||| ||||  | |||| ||||||||    
T  6396917 acatggttcaacgaaattgtatggaaacattgaatagtaaggcggtgatgtcagacaacctagcacaatcaaagaaggtaaagggttaagagaggaggtc 6396818  T
Q  345 atga 348  Q
    ||||    
T  6396817 atga 6396814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 348
Target Start/End: Original strand, 16676590 - 16676790
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtgggacaaggggagaagtttttcaagtgtgcaccatgggtaccaaaggttacatcttggaggtggaaacaagca 248  Q
    ||||||||||||||| || |||||||||||   ||||||||||||| ||||||| |||||||  | ||||||| | | | | ||||  || ||  ||||     
T  16676590 gaattcacaacaattcgcacccaccgtggggagaggggagaagtttgtcaagtgagcaccataagaaccaaagttgataccatggatatgaaagtaagct 16676689  T
Q  249 tgattcaatggaagtgtatggaagcattgaaagttgagatagtgatgttgatcaacctagcacaatcaaagaagg-aaagtatgaagataggaggtcatg 347  Q
    || ||||||| |||||||||||||||| ||| | ||||| |||||| ||   |||| ||| | |||||||||||| ||||| | |||| |||| ||||||    
T  16676690 tggttcaatgaaagtgtatggaagcatcgaaggatgagacagtgatatttggcaacttagtagaatcaaagaaggtaaagtgttaagagaggaagtcatg 16676789  T
Q  348 a 348  Q
    |    
T  16676790 a 16676790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 24398382 - 24398442
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattga 144  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||  ||||| ||||||    
T  24398382 tggttgtcattgatacttgctctacgaatctaaatttcattaatgtgcggtttggaattga 24398442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 33648473 - 33648548
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||  ||||  |||  ||||||||||||||||    
T  33648473 tggttgtcattgattcttactccacgaatctaaatttcattgatatgagatttg-gattttgaccgaattcacaaca 33648548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 42261358 - 42261311
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtga 131  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  42261358 tggttgccattgatacttgctccacaaatctaaatttcattgacgtga 42261311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 11690837 - 11690874
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  11690837 ttgagtccgaattcacaacaattggcgcccaccgtggg 11690874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 36560993 - 36560956
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  36560993 cgaattcacaacaattggcgcccaccgtggggcaaggg 36560956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 30217934 - 30217843
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcaca 157  Q
    ||||||||||||  |||||||  |||||||| |||||| ||  ||||| |||||||||| |||||||||||  |||||||||   ||||||||||||    
T  30217934 ttgcttgtggttgttttggttattggttgtcgttgatattt--tccacaaatctaaattccattgatgtgagatttgaaatt---accgaattcaca 30217843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 2736524 - 2736554
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  2736524 cgaattcacaacaattggcgcccaccgtggg 2736554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 10942375 - 10942341
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaa 182  Q
    |||||||| ||||||||||||||||||||||||||    
T  10942375 cgaattcaaaacaattggcgcccaccgtgggacaa 10942341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 10948244 - 10948210
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaa 182  Q
    |||||||| ||||||||||||||||||||||||||    
T  10948244 cgaattcaaaacaattggcgcccaccgtgggacaa 10948210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 19504190 - 19504160
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  19504190 cgaattcacaacaattggcgcccaccgtggg 19504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 20054622 - 20054592
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  20054622 cgaattcacaacaattggcgcccaccgtggg 20054592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 22717095 - 22717065
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  22717095 cgaattcacaacaattggcgcccaccgtggg 22717065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 34575002 - 34574972
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  34575002 cgaattcacaacaattggcgcccaccgtggg 34574972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 39680365 - 39680395
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  39680365 cgaattcacaacaattggcgcccaccgtggg 39680395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 35217819 - 35217786
Alignment:
Q  151 attcacaacaattggcgcccaccgtgggacaagg 184  Q
    |||||||||||||||||||||||||||| |||||    
T  35217819 attcacaacaattggcgcccaccgtggggcaagg 35217786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 723566 - 723526
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtgggaca 181  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  723566 ttgagtccgaattcacaacaattgacgcacaccgtgggaca 723526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 19349084 - 19349052
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  19349084 accggattcacaacaattggcgcccaccgtggg 19349052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 25403457 - 25403425
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  25403457 accggattcacaacaattggcgcccaccgtggg 25403425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 3454 - 3377
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagttt-gaaattgagaccgaattcacaaca 160  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  3454 tggttgccattgatacttgctccatgaatctaaatttcattgatgtgaggtttggaatttgagaccgaattcacaaca 3377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 27637471 - 27637403
Alignment:
Q  91 cattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaa-ttgagaccgaattcacaa 158  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||    
T  27637471 cattaatacttgctccacgaatttaaatttcattgatgtgaggtttgaaatttgagaccgaattcacaa 27637403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 317045 - 317115
Alignment:
Q  61 ttgcttgtggttaatttggttgatggttgtcattgatacttgctccacgaatctaaatttcattgatgtga 131  Q
    ||||||||||||| |||||||  ||||||||| |||||||||  |||||||||||||||||||||||||||    
T  317045 ttgcttgtggttattttggttattggttgtcactgatacttgtcccacgaatctaaatttcattgatgtga 317115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 16640811 - 16640737
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtgaagtttgaaattgagaccgaattcacaaca 160  Q
    ||||||| |||||||||||||||||||||||||| || ||||| |||||||||  ||||  | ||||||||||||||    
T  16640811 tggttgttattgatacttgctccacgaatctaaaatttattgacgtgaagtttagaatt--gtccgaattcacaaca 16640737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 534108 - 534145
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  534108 ttgagtccgaattcacaacaattggcgcccaccgtggg 534145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 10750125 - 10750162
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  10750125 cgaattcacaacaattggcgcccaccgtggggcaaggg 10750162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 13695514 - 13695481
Alignment:
Q  141 ttgagaccgaattcacaacaattggcgcccaccg 174  Q
    ||||||||||||||||||||||||||||||||||    
T  13695514 ttgagaccgaattcacaacaattggcgcccaccg 13695481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 31397273 - 31397304
Alignment:
Q  147 ccgaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||||    
T  31397273 ccgaattcacaacaattggcgcccaccgtggg 31397304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 15356702 - 15356672
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  15356702 cgaattcacaacaattggcgcccaccgtggg 15356672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 20505698 - 20505664
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtgggacaag 183  Q
    |||||||||||||||||||||||||||||| ||||    
T  20505698 gaattcacaacaattggcgcccaccgtggggcaag 20505664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 23665472 - 23665502
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  23665472 cgaattcacaacaattggcgcccaccgtggg 23665502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 23793115 - 23793085
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  23793115 cgaattcacaacaattggcgcccaccgtggg 23793085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 27910860 - 27910890
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  27910860 cgaattcacaacaattggcgcccaccgtggg 27910890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 31543163 - 31543197
Alignment:
Q  151 attcacaacaattggcgcccaccgtgggacaaggg 185  Q
    |||||||||||||||||||||||||||| ||||||    
T  31543163 attcacaacaattggcgcccaccgtggggcaaggg 31543197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 9789032 - 9789003
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  9789032 gaattcacaacaattggcgcccaccgtggg 9789003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 18467111 - 18467140
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgg 177  Q
    ||||||||||||||||||||||||||||||    
T  18467111 cgaattcacaacaattggcgcccaccgtgg 18467140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 25445807 - 25445836
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  25445807 gaattcacaacaattggcgcccaccgtggg 25445836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 29720732 - 29720761
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  29720732 gaattcacaacaattggcgcccaccgtggg 29720761  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 8445995 - 8446039
Alignment:
Q  86 gttgtcattgatacttgctccacgaatctaaatttcattgatgtg 130  Q
    |||| ||||||||||||  |||| |||||||||||||||||||||    
T  8445995 gttgccattgatacttgtcccacaaatctaaatttcattgatgtg 8446039  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 27449629 - 27449597
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  27449629 accggattcacaacaattggcgcccaccgtggg 27449597  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 28278569 - 28278617
Alignment:
Q  61 ttgcttgtggttaatttggtt-gatggttgtcattgatacttgctccac 108  Q
    ||||||||||||||||| ||| | |||||| ||||||||||||||||||    
T  28278569 ttgcttgtggttaattttgtttgttggttgccattgatacttgctccac 28278617  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 37556904 - 37556936
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  37556904 accggattcacaacaattggcgcccaccgtggg 37556936  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 43598539 - 43598507
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  43598539 accggattcacaacaattggcgcccaccgtggg 43598507  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 43604031 - 43603999
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  43604031 accggattcacaacaattggcgcccaccgtggg 43603999  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 43609523 - 43609491
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  43609523 accggattcacaacaattggcgcccaccgtggg 43609491  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 490193 - 490146
Alignment:
Q  84 tggttgtcattgatacttgctccacgaatctaaatttcattgatgtga 131  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  490193 tggttgccattgatacttgctccacaaatctaaatttcattgacgtga 490146  T

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Target: scaffold0466 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 6728 - 6766
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  6728 tttggtgtttggaaaatgttggaatcgtgacacgatttt 6766  T

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Target: scaffold0466; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 7606 - 7654
Alignment:
Q  61 ttgcttgtggttaa-tttggttgatggttgtcattgatacttgctccac 108  Q
    |||||||||||| | |||||||| |||||| ||||||||||||||||||    
T  7606 ttgcttgtggtttactttggttgttggttgccattgatacttgctccac 7654  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 81071 - 81033
Alignment:
Q  7 tttggtgtttggaaaatgttggaatcgtggcacgatttt 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  81071 tttggtgtttggaaaatgttggaatcgtgacacgatttt 81033  T

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Target: scaffold0127 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 12727 - 12690
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  12727 cgaattcacaacaattggcgcccaccgtggggcaaggg 12690  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 16897 - 16867
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  16897 cgaattcacaacaattggcgcccaccgtggg 16867  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 22552 - 22582
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtggg 178  Q
    |||||||||||||||||||||||||||||||    
T  22552 cgaattcacaacaattggcgcccaccgtggg 22582  T

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Target: scaffold0491 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 10971 - 10942
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  10971 gaattcacaacaattggcgcccaccgtggg 10942  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Original strand, 37108 - 37137
Alignment:
Q  149 gaattcacaacaattggcgcccaccgtggg 178  Q
    ||||||||||||||||||||||||||||||    
T  37108 gaattcacaacaattggcgcccaccgtggg 37137  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 50445 - 50482
Alignment:
Q  148 cgaattcacaacaattggcgcccaccgtgggacaaggg 185  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  50445 cgaattcgcaacaattggcgcccaccgtggggcaaggg 50482  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 14589 - 14621
Alignment:
Q  146 accgaattcacaacaattggcgcccaccgtggg 178  Q
    |||| ||||||||||||||||||||||||||||    
T  14589 accggattcacaacaattggcgcccaccgtggg 14621  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 18664 - 18632
Alignment:
Q  18 gaaaatgttggaatcgtggcacgattttcaagg 50  Q
    |||| ||||||||||||||||||||||||||||    
T  18664 gaaagtgttggaatcgtggcacgattttcaagg 18632  T

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