View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_3 (Length: 578)

Name: NF21683_high_3
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_3
NF21683_high_3
[»] chr1 (13 HSPs)
chr1 (123-326)||(23182163-23182368)
chr1 (179-309)||(4977555-4977685)
chr1 (179-309)||(5316053-5316183)
chr1 (179-309)||(21741545-21741675)
chr1 (179-309)||(50880843-50880972)
chr1 (127-180)||(4977317-4977370)
chr1 (128-180)||(5316300-5316352)
chr1 (477-520)||(23181926-23181969)
chr1 (179-242)||(50881019-50881082)
chr1 (127-180)||(21741365-21741418)
chr1 (127-178)||(50881211-50881262)
chr1 (201-242)||(4977399-4977440)
chr1 (201-242)||(5316230-5316271)
[»] chr8 (4 HSPs)
chr8 (123-350)||(45472522-45472753)
chr8 (182-309)||(41878463-41878590)
chr8 (482-571)||(45472376-45472464)
chr8 (127-180)||(41878720-41878773)
[»] chr5 (10 HSPs)
chr5 (179-309)||(23285542-23285672)
chr5 (179-310)||(27078486-27078617)
chr5 (179-309)||(22987101-22987231)
chr5 (194-309)||(16592486-16592601)
chr5 (179-310)||(30853563-30853693)
chr5 (128-180)||(23285369-23285421)
chr5 (127-180)||(27078734-27078787)
chr5 (127-180)||(30853820-30853873)
chr5 (137-180)||(22986932-22986975)
chr5 (201-242)||(23285450-23285491)
[»] chr4 (17 HSPs)
chr4 (180-309)||(9579110-9579239)
chr4 (180-309)||(9584805-9584934)
chr4 (180-309)||(48208744-48208873)
chr4 (179-309)||(23510470-23510600)
chr4 (179-309)||(35780166-35780296)
chr4 (182-309)||(54779733-54779860)
chr4 (179-309)||(10978401-10978531)
chr4 (179-309)||(34769191-34769321)
chr4 (179-309)||(47128280-47128410)
chr4 (127-180)||(47128527-47128580)
chr4 (127-180)||(54779970-54780023)
chr4 (127-180)||(10431065-10431118)
chr4 (127-180)||(23510291-23510344)
chr4 (208-300)||(10431126-10431218)
chr4 (123-180)||(34769007-34769064)
chr4 (127-180)||(35779987-35780039)
chr4 (201-242)||(47128457-47128498)
[»] chr2 (8 HSPs)
chr2 (179-299)||(29940216-29940336)
chr2 (179-300)||(34715855-34715976)
chr2 (179-300)||(34693443-34693564)
chr2 (128-180)||(34693691-34693743)
chr2 (128-180)||(34716103-34716155)
chr2 (127-178)||(40445455-40445506)
chr2 (201-242)||(29940128-29940169)
chr2 (201-242)||(40445383-40445424)
[»] chr6 (2 HSPs)
chr6 (179-309)||(19740859-19740989)
chr6 (127-180)||(19740680-19740733)
[»] chr3 (4 HSPs)
chr3 (183-309)||(3954512-3954638)
chr3 (179-274)||(8073704-8073799)
chr3 (127-180)||(3954328-3954381)
chr3 (201-242)||(8073616-8073657)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 23182368 - 23182163
Alignment:
123 cacagaaatttgaataattttaacaaaaactcccaaaacagta--aatatgcagaaatcagtgttgttctcaacattcaacaaatctctatgaatctcta 220  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
23182368 cacagaaatttgaataattttaacaaaaactcccaaaacggtataaatatgcagaaatcagtgttgttctcaacattcaacaaatctctatcaatctcta 23182269  T
221 ttttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaatactttgcttg 320  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23182268 ttttagggatttcaacattcaaattaattaaagagagtttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaatactttgcttg 23182169  T
321 ttgaga 326  Q
    ||||||    
23182168 ttgaga 23182163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 4977555 - 4977685
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| | |    
4977555 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttctttacttaccaaacaat 4977654  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| |||||||||||||||||||||||||    
4977655 gttgttttggaaaggggaaaaccaattgaaa 4977685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 5316183 - 5316053
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||    
5316183 cagtgttgttttcaacattcaacaaatttatatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 5316084  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| ||||||||||||||||  |||||||    
5316083 gttgttttggaaaggggaaaactgattgaaa 5316053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 21741545 - 21741675
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||| | ||| ||||| ||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||    
21741545 cagtgttgttttcaacattcaacaaatttttatcaatctttattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 21741644  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| ||||||||||||||||  |||||||    
21741645 gttgttttggaaaggggaaaactgattgaaa 21741675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 50880972 - 50880843
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||| |||    
50880972 cagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaacattcaaattaatgaaagacagtttatttacttaccaaacagt 50880873  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
     |||| |||||||||| |||||  |||||||    
50880872 -ttgttttggaaagggaaaaacttattgaaa 50880843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 4977317 - 4977370
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4977317 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 4977370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 5316352 - 5316300
Alignment:
128 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
5316352 aaatttaaataattttaacaaaaactcccaaaactgtaaatatgcagaaatca 5316300  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 23181969 - 23181926
Alignment:
477 ggttgtgatttgtgaatcggtggtgatggaatggatggaagaaa 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
23181969 ggttgtgatttgtgaatcggtggtgatggaatggatggaagaaa 23181926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 50881082 - 50881019
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||  ||||||||||||||    
50881082 cagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaacattcaa 50881019  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 21741365 - 21741418
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||||||    
21741365 gaaatttgaataattttaacaaaaactttcaatacagtaaatatgcagaaatca 21741418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 50881262 - 50881211
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaat 178  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
50881262 gaaatttgaataattttaacaaaaactctcaaaatagtaaatatgtagaaat 50881211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 4977399 - 4977440
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
4977399 caaatctctatcaatctctattttagcaatttcaacattcaa 4977440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 5316271 - 5316230
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
5316271 caaatctctatcaatctctattttagcaatttcaacattcaa 5316230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 123 - 350
Target Start/End: Complemental strand, 45472753 - 45472522
Alignment:
123 cacagaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatcagtgttgttctcaa-------cattcaacaaatctctatgaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||    
45472753 cacagaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatcagtgttgttctcaaatctcaacattcaacaaatctctatcaat 45472654  T
216 ctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaatacttt 315  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
45472653 ctctattttagagatttcaacattcaaattaatgaaagagagtttctttacttaccaaatagtgttgttttggaaaggggaaaaccaattgaaatacttt 45472554  T
316 gcttgttgagagtctactgtctacaagcgagtttc 350  Q
    ||||||||||||   |||||||||||| |||||||    
45472553 gcttgttgagag---actgtctacaagtgagtttc 45472522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 41878590 - 41878463
Alignment:
182 tgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgtt 281  Q
    ||||||| |||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||| |||| |||||||| | ||||    
41878590 tgttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacaatgtt 41878491  T
282 gtgttggaaaggggaaaaccaattgaaa 309  Q
    || ||||||||||||||||  |||||||    
41878490 gttttggaaaggggaaaactgattgaaa 41878463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 571
Target Start/End: Complemental strand, 45472464 - 45472376
Alignment:
482 tgatttgtgaatcggtggtgatggaatggatggaagaaaatcggtgaaccgtgagtgatgagggttgtgatttgttgtgaatctgtggtg 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
45472464 tgatttgtgaatcggtggtgatggaatggatggaagaaaatcggtg-accgtgagtgatgatggttgtgatttgttgtgaatcggtggtg 45472376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 41878773 - 41878720
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
41878773 gaaatttgaataattttaacaaaaattcccaaaacaataaatatgcagaaatca 41878720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 23285542 - 23285672
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||    
23285542 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 23285641  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| ||||||||||||||||  |||||||    
23285642 gttgttttggaaaggggaaaactgattgaaa 23285672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 27078617 - 27078486
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||| ||||  ||    
27078617 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttatcaaactgt 27078518  T
279 gttgtgttggaaaggggaaaaccaattgaaat 310  Q
    ||||| ||||||||||||||||  ||||||||    
27078517 gttgttttggaaaggggaaaactgattgaaat 27078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 22987101 - 22987231
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||    
22987101 cagtgttgttttcaacattctacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 22987200  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
     |||| ||||||||||||||||  |||||||    
22987201 attgttttggaaaggggaaaactgattgaaa 22987231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 16592486 - 16592601
Alignment:
194 cattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaagg 293  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||| |||||    
16592486 cattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagg 16592585  T
294 ggaaaaccaattgaaa 309  Q
    |||||||  |||||||    
16592586 ggaaaactgattgaaa 16592601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 30853693 - 30853563
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||||| ||||||||||| |||| |||||||| | |    
30853693 cagtgttgttttcaacattcaacaaatctctatcaatctctattt-agcaatttcaacattcaaattaattaaagagagtttatttacttaccaaacact 30853595  T
279 gttgtgttggaaaggggaaaaccaattgaaat 310  Q
     |||| ||||||||||||||||  ||||||||    
30853594 attgttttggaaaggggaaaactgattgaaat 30853563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 23285369 - 23285421
Alignment:
128 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
23285369 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 23285421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 27078787 - 27078734
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
27078787 gaaatttgaataattttaaaaaaaactcccaaaacagtaaatatgcagaaatca 27078734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 30853873 - 30853820
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
30853873 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcataaatca 30853820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 22986932 - 22986975
Alignment:
137 taattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
22986932 taattttaacaaaaactcccaaaacagtaaatatgcagaaatca 22986975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 23285450 - 23285491
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
23285450 caaatctctatcaatctctattttagcaatttcaacattcaa 23285491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 9579110 - 9579239
Alignment:
180 agtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtg 279  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
9579110 agtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtg 9579209  T
280 ttgtgttggaaaggggaaaaccaattgaaa 309  Q
    |||| ||||||||||||||||  |||||||    
9579210 ttgttttggaaaggggaaaactgattgaaa 9579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 9584805 - 9584934
Alignment:
180 agtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtg 279  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
9584805 agtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtg 9584904  T
280 ttgtgttggaaaggggaaaaccaattgaaa 309  Q
    |||| ||||||||||||||||  |||||||    
9584905 ttgttttggaaaggggaaaactgattgaaa 9584934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 48208873 - 48208744
Alignment:
180 agtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtg 279  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
48208873 agtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtg 48208774  T
280 ttgtgttggaaaggggaaaaccaattgaaa 309  Q
    |||| ||||||||||||||||  |||||||    
48208773 ttgttttggaaaggggaaaactgattgaaa 48208744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 23510470 - 23510600
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| | |||||| |||    
23510470 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagaaatttcaacattcaaattaatgaaagagagtttatttactaaccaaacagt 23510569  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| ||||||||||||||||  |||||||    
23510570 gttgttttggaaaggggaaaactgattgaaa 23510600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 35780166 - 35780296
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||| |||| |||||||| |||    
35780166 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaactaatgaaagagagtttatttacttaccaaacagt 35780265  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| |||||||||| |||||| |||||||    
35780266 gttgttttggaaagggaaaaaccgattgaaa 35780296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 54779860 - 54779733
Alignment:
182 tgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgtt 281  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| ||||||    
54779860 tgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgtt 54779761  T
282 gtgttggaaaggggaaaaccaattgaaa 309  Q
    ||  |||||||||||||||  |||||||    
54779760 gttatggaaaggggaaaactgattgaaa 54779733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 10978531 - 10978401
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||    
10978531 cagtgttgttttcaacattcaaaaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 10978432  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||  ||||||||||| ||||  |||||||    
10978431 gttgctttggaaagggggaaactgattgaaa 10978401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 34769191 - 34769321
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    ||||| |||| |||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||| |||    
34769191 cagtgctgttttcaacattcaacaaatttctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 34769290  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| ||||||||||| ||||  |||||||    
34769291 gttgttttggaaaggggtaaactgattgaaa 34769321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 47128410 - 47128280
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||||| |||| |||||||| | |    
47128410 cagtgttgttttcaacattcaacaaatctctatcaatctctattttcacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacaat 47128311  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| ||||||||||||||||  |||||||    
47128310 gttgttttggaaaggggaaaactgattgaaa 47128280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 47128580 - 47128527
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47128580 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 47128527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 54780023 - 54779970
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54780023 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 54779970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 10431065 - 10431118
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
10431065 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcataaatca 10431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 23510291 - 23510344
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
23510291 gaaatttgaataattttaacaaaaactccgaaaacagtaaatatgcagaaatca 23510344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 10431126 - 10431218
Alignment:
208 ctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaaggggaaaac 300  Q
    |||| |||||||||||||   |||||| ||||||||||||||||||||||||| |||| |||||||| |||||||| ||| |||||| |||||    
10431126 ctatcaatctctattttaacaatttcatcattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagggaaaaac 10431218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 34769007 - 34769064
Alignment:
123 cacagaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
34769007 cacataaatttgaataattttagcaaaaactcccaaaatagtaaatatgctgaaatca 34769064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 35779987 - 35780039
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
35779987 gaaatttgaataattttaacaaaa-ctcctaaaacagtaaatatgcataaatca 35780039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 47128498 - 47128457
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
47128498 caaatctctatcaatctctattttagcaatttcaacattcaa 47128457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 179 - 299
Target Start/End: Original strand, 29940216 - 29940336
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||| | |||    
29940216 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccagacagt 29940315  T
279 gttgtgttggaaaggggaaaa 299  Q
    ||||| |||||||||||||||    
29940316 gttgttttggaaaggggaaaa 29940336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 34715976 - 34715855
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||| | |    
34715976 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagaaagtttatttacttaccaaacaat 34715877  T
279 gttgtgttggaaaggggaaaac 300  Q
    ||||| |||||||||| |||||    
34715876 gttgttttggaaagggaaaaac 34715855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 34693564 - 34693443
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||| | |    
34693564 cagtgttgttttcaacattcaataaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagaaagtttatttacttaccaaacaat 34693465  T
279 gttgtgttggaaaggggaaaac 300  Q
    ||||| |||||||||| |||||    
34693464 gttgttttggaaagggaaaaac 34693443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 34693743 - 34693691
Alignment:
128 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
34693743 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 34693691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 34716155 - 34716103
Alignment:
128 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
34716155 aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 34716103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 40445506 - 40445455
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
40445506 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaat 40445455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 29940128 - 29940169
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
29940128 caaatctctatcaatctctattttagcaatttcaacattcaa 29940169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 40445424 - 40445383
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
40445424 caaatctctatcaatctctattttagcaatttcaacattcaa 40445383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 19740859 - 19740989
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt 278  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||   |||||||||||||||||||||||||||||||| |||| |||||||| |||    
19740859 cagtgttgttttcaacattcaacaaatctctatctatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt 19740958  T
279 gttgtgttggaaaggggaaaaccaattgaaa 309  Q
    ||||| |||||||||| |||||  |||||||    
19740959 gttgttttggaaagggaaaaactgattgaaa 19740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 19740680 - 19740733
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
19740680 gaaatttgattaattttaacaaaaactcccaaaacagtaaatatgcagaaatca 19740733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 3954512 - 3954638
Alignment:
183 gttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttg 282  Q
    |||||| |||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||| |||| |||||||| |||||||    
3954512 gttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttg 3954611  T
283 tgttggaaaggggaaaaccaattgaaa 309  Q
    | ||||||| ||||||||  |||||||    
3954612 ttttggaaatgggaaaactgattgaaa 3954638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 8073704 - 8073799
Alignment:
179 cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaa 274  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||    
8073704 cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaa 8073799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 3954328 - 3954381
Alignment:
127 gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
3954328 gaaatttgaataattttaacaaaaactcccaaaacagtaaatattcagaaatca 3954381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 8073616 - 8073657
Alignment:
201 caaatctctatgaatctctattttagggatttcaacattcaa 242  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
8073616 caaatctctatcaatctctattttagcaatttcaacattcaa 8073657  T

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