View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21683_high_3 (Length: 578)
Name: NF21683_high_3
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21683_high_3 |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 123 - 326
Target Start/End: Complemental strand, 23182368 - 23182163
Alignment:
| Q |
123 |
cacagaaatttgaataattttaacaaaaactcccaaaacagta--aatatgcagaaatcagtgttgttctcaacattcaacaaatctctatgaatctcta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23182368 |
cacagaaatttgaataattttaacaaaaactcccaaaacggtataaatatgcagaaatcagtgttgttctcaacattcaacaaatctctatcaatctcta |
23182269 |
T |
 |
| Q |
221 |
ttttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaatactttgcttg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23182268 |
ttttagggatttcaacattcaaattaattaaagagagtttctttacttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaatactttgcttg |
23182169 |
T |
 |
| Q |
321 |
ttgaga |
326 |
Q |
| |
|
|||||| |
|
|
| T |
23182168 |
ttgaga |
23182163 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 4977555 - 4977685
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
4977555 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttctttacttaccaaacaat |
4977654 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
4977655 |
gttgttttggaaaggggaaaaccaattgaaa |
4977685 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 5316183 - 5316053
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
5316183 |
cagtgttgttttcaacattcaacaaatttatatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
5316084 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |
|
|
| T |
5316083 |
gttgttttggaaaggggaaaactgattgaaa |
5316053 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 21741545 - 21741675
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
21741545 |
cagtgttgttttcaacattcaacaaatttttatcaatctttattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
21741644 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |
|
|
| T |
21741645 |
gttgttttggaaaggggaaaactgattgaaa |
21741675 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 50880972 - 50880843
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||| ||| |
|
|
| T |
50880972 |
cagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaacattcaaattaatgaaagacagtttatttacttaccaaacagt |
50880873 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| |
|
|
| T |
50880872 |
-ttgttttggaaagggaaaaacttattgaaa |
50880843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 4977317 - 4977370
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4977317 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
4977370 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 5316352 - 5316300
Alignment:
| Q |
128 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5316352 |
aaatttaaataattttaacaaaaactcccaaaactgtaaatatgcagaaatca |
5316300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 477 - 520
Target Start/End: Complemental strand, 23181969 - 23181926
Alignment:
| Q |
477 |
ggttgtgatttgtgaatcggtggtgatggaatggatggaagaaa |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23181969 |
ggttgtgatttgtgaatcggtggtgatggaatggatggaagaaa |
23181926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 50881082 - 50881019
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
50881082 |
cagtgttgttttcaacattcaacaaatcactatcaatctctattttagcaatttcaacattcaa |
50881019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 21741365 - 21741418
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
21741365 |
gaaatttgaataattttaacaaaaactttcaatacagtaaatatgcagaaatca |
21741418 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 50881262 - 50881211
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
50881262 |
gaaatttgaataattttaacaaaaactctcaaaatagtaaatatgtagaaat |
50881211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 4977399 - 4977440
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4977399 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
4977440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 5316271 - 5316230
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
5316271 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
5316230 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 123 - 350
Target Start/End: Complemental strand, 45472753 - 45472522
Alignment:
| Q |
123 |
cacagaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatcagtgttgttctcaa-------cattcaacaaatctctatgaat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
45472753 |
cacagaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatcagtgttgttctcaaatctcaacattcaacaaatctctatcaat |
45472654 |
T |
 |
| Q |
216 |
ctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaaggggaaaaccaattgaaatacttt |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45472653 |
ctctattttagagatttcaacattcaaattaatgaaagagagtttctttacttaccaaatagtgttgttttggaaaggggaaaaccaattgaaatacttt |
45472554 |
T |
 |
| Q |
316 |
gcttgttgagagtctactgtctacaagcgagtttc |
350 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |
|
|
| T |
45472553 |
gcttgttgagag---actgtctacaagtgagtttc |
45472522 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 41878590 - 41878463
Alignment:
| Q |
182 |
tgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgtt |
281 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | |||| |
|
|
| T |
41878590 |
tgttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacaatgtt |
41878491 |
T |
 |
| Q |
282 |
gtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|| |||||||||||||||| ||||||| |
|
|
| T |
41878490 |
gttttggaaaggggaaaactgattgaaa |
41878463 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 571
Target Start/End: Complemental strand, 45472464 - 45472376
Alignment:
| Q |
482 |
tgatttgtgaatcggtggtgatggaatggatggaagaaaatcggtgaaccgtgagtgatgagggttgtgatttgttgtgaatctgtggtg |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
45472464 |
tgatttgtgaatcggtggtgatggaatggatggaagaaaatcggtg-accgtgagtgatgatggttgtgatttgttgtgaatcggtggtg |
45472376 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 41878773 - 41878720
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
41878773 |
gaaatttgaataattttaacaaaaattcccaaaacaataaatatgcagaaatca |
41878720 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 23285542 - 23285672
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
23285542 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
23285641 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |
|
|
| T |
23285642 |
gttgttttggaaaggggaaaactgattgaaa |
23285672 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 27078617 - 27078486
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |||| || |
|
|
| T |
27078617 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttatcaaactgt |
27078518 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaat |
310 |
Q |
| |
|
||||| |||||||||||||||| |||||||| |
|
|
| T |
27078517 |
gttgttttggaaaggggaaaactgattgaaat |
27078486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 22987101 - 22987231
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
22987101 |
cagtgttgttttcaacattctacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
22987200 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |
|
|
| T |
22987201 |
attgttttggaaaggggaaaactgattgaaa |
22987231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 16592486 - 16592601
Alignment:
| Q |
194 |
cattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaagg |
293 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||| ||||| |
|
|
| T |
16592486 |
cattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagg |
16592585 |
T |
 |
| Q |
294 |
ggaaaaccaattgaaa |
309 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
16592586 |
ggaaaactgattgaaa |
16592601 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 310
Target Start/End: Complemental strand, 30853693 - 30853563
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||| |||||||| | | |
|
|
| T |
30853693 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattt-agcaatttcaacattcaaattaattaaagagagtttatttacttaccaaacact |
30853595 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaat |
310 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |
|
|
| T |
30853594 |
attgttttggaaaggggaaaactgattgaaat |
30853563 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 23285369 - 23285421
Alignment:
| Q |
128 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23285369 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
23285421 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 27078787 - 27078734
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27078787 |
gaaatttgaataattttaaaaaaaactcccaaaacagtaaatatgcagaaatca |
27078734 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 30853873 - 30853820
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30853873 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcataaatca |
30853820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 22986932 - 22986975
Alignment:
| Q |
137 |
taattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22986932 |
taattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
22986975 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 23285450 - 23285491
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
23285450 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
23285491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 9579110 - 9579239
Alignment:
| Q |
180 |
agtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtg |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
9579110 |
agtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtg |
9579209 |
T |
 |
| Q |
280 |
ttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |
|
|
| T |
9579210 |
ttgttttggaaaggggaaaactgattgaaa |
9579239 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 9584805 - 9584934
Alignment:
| Q |
180 |
agtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtg |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
9584805 |
agtgttgttttcaacattcaacaaatctctatcaatctctattttagtaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtg |
9584904 |
T |
 |
| Q |
280 |
ttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |
|
|
| T |
9584905 |
ttgttttggaaaggggaaaactgattgaaa |
9584934 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 48208873 - 48208744
Alignment:
| Q |
180 |
agtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtg |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
48208873 |
agtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtg |
48208774 |
T |
 |
| Q |
280 |
ttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |
|
|
| T |
48208773 |
ttgttttggaaaggggaaaactgattgaaa |
48208744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 23510470 - 23510600
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||| ||| |
|
|
| T |
23510470 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagaaatttcaacattcaaattaatgaaagagagtttatttactaaccaaacagt |
23510569 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |
|
|
| T |
23510570 |
gttgttttggaaaggggaaaactgattgaaa |
23510600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 35780166 - 35780296
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||||| ||| |
|
|
| T |
35780166 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaactaatgaaagagagtttatttacttaccaaacagt |
35780265 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||| |||||| ||||||| |
|
|
| T |
35780266 |
gttgttttggaaagggaaaaaccgattgaaa |
35780296 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 54779860 - 54779733
Alignment:
| Q |
182 |
tgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgtt |
281 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
54779860 |
tgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgtt |
54779761 |
T |
 |
| Q |
282 |
gtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
|
|
| T |
54779760 |
gttatggaaaggggaaaactgattgaaa |
54779733 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 10978531 - 10978401
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
10978531 |
cagtgttgttttcaacattcaaaaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
10978432 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
|||| ||||||||||| |||| ||||||| |
|
|
| T |
10978431 |
gttgctttggaaagggggaaactgattgaaa |
10978401 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 34769191 - 34769321
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
||||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
34769191 |
cagtgctgttttcaacattcaacaaatttctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
34769290 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| ||||||||||| |||| ||||||| |
|
|
| T |
34769291 |
gttgttttggaaaggggtaaactgattgaaa |
34769321 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 47128410 - 47128280
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | | |
|
|
| T |
47128410 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttcacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacaat |
47128311 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |
|
|
| T |
47128310 |
gttgttttggaaaggggaaaactgattgaaa |
47128280 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 47128580 - 47128527
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47128580 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
47128527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 54780023 - 54779970
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54780023 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
54779970 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 10431065 - 10431118
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10431065 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcataaatca |
10431118 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 23510291 - 23510344
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23510291 |
gaaatttgaataattttaacaaaaactccgaaaacagtaaatatgcagaaatca |
23510344 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 10431126 - 10431218
Alignment:
| Q |
208 |
ctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttgtgttggaaaggggaaaac |
300 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||| |||||||| ||| |||||| ||||| |
|
|
| T |
10431126 |
ctatcaatctctattttaacaatttcatcattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagggaaaaac |
10431218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 34769007 - 34769064
Alignment:
| Q |
123 |
cacagaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
34769007 |
cacataaatttgaataattttagcaaaaactcccaaaatagtaaatatgctgaaatca |
34769064 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 35779987 - 35780039
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
35779987 |
gaaatttgaataattttaacaaaa-ctcctaaaacagtaaatatgcataaatca |
35780039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 47128498 - 47128457
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
47128498 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
47128457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 179 - 299
Target Start/End: Original strand, 29940216 - 29940336
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| | ||| |
|
|
| T |
29940216 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccagacagt |
29940315 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaa |
299 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
29940316 |
gttgttttggaaaggggaaaa |
29940336 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 34715976 - 34715855
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||| | | |
|
|
| T |
34715976 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagaaagtttatttacttaccaaacaat |
34715877 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaac |
300 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
34715876 |
gttgttttggaaagggaaaaac |
34715855 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 34693564 - 34693443
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||| | | |
|
|
| T |
34693564 |
cagtgttgttttcaacattcaataaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagaaagtttatttacttaccaaacaat |
34693465 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaac |
300 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
34693464 |
gttgttttggaaagggaaaaac |
34693443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 34693743 - 34693691
Alignment:
| Q |
128 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34693743 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
34693691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 34716155 - 34716103
Alignment:
| Q |
128 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34716155 |
aaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
34716103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 40445506 - 40445455
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40445506 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaat |
40445455 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 29940128 - 29940169
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
29940128 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
29940169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 40445424 - 40445383
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
40445424 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
40445383 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 19740859 - 19740989
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagt |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
19740859 |
cagtgttgttttcaacattcaacaaatctctatctatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagt |
19740958 |
T |
 |
| Q |
279 |
gttgtgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
||||| |||||||||| ||||| ||||||| |
|
|
| T |
19740959 |
gttgttttggaaagggaaaaactgattgaaa |
19740989 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 19740680 - 19740733
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19740680 |
gaaatttgattaattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
19740733 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 3954512 - 3954638
Alignment:
| Q |
183 |
gttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaatagtgttg |
282 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
3954512 |
gttgttttcaacattcaacaaatctctatcaatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttg |
3954611 |
T |
 |
| Q |
283 |
tgttggaaaggggaaaaccaattgaaa |
309 |
Q |
| |
|
| ||||||| |||||||| ||||||| |
|
|
| T |
3954612 |
ttttggaaatgggaaaactgattgaaa |
3954638 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 8073704 - 8073799
Alignment:
| Q |
179 |
cagtgttgttctcaacattcaacaaatctctatgaatctctattttagggatttcaacattcaaattaatgaaagagagtttctttatttaccaaa |
274 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
8073704 |
cagtgttgttttcaacattcaacaaatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaa |
8073799 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 3954328 - 3954381
Alignment:
| Q |
127 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3954328 |
gaaatttgaataattttaacaaaaactcccaaaacagtaaatattcagaaatca |
3954381 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 8073616 - 8073657
Alignment:
| Q |
201 |
caaatctctatgaatctctattttagggatttcaacattcaa |
242 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
8073616 |
caaatctctatcaatctctattttagcaatttcaacattcaa |
8073657 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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