View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_31 (Length: 325)

Name: NF21683_high_31
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_31
NF21683_high_31
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-285)||(34539-34823)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-264)||(39713-39977)
[»] chr7 (3 HSPs)
chr7 (1-183)||(14302099-14302281)
chr7 (141-203)||(12182738-12182805)
chr7 (139-183)||(4598156-4598200)
[»] chr8 (4 HSPs)
chr8 (1-154)||(23638642-23638796)
chr8 (1-168)||(17624397-17624564)
chr8 (57-154)||(24382816-24382914)
chr8 (139-205)||(23639372-23639440)
[»] chr4 (5 HSPs)
chr4 (4-183)||(9650597-9650778)
chr4 (44-167)||(9220350-9220472)
chr4 (55-153)||(9250951-9251049)
chr4 (221-279)||(9650938-9650995)
chr4 (18-79)||(9197570-9197631)
[»] scaffold1923 (1 HSPs)
scaffold1923 (1-104)||(1127-1230)
[»] chr2 (9 HSPs)
chr2 (43-168)||(17739569-17739693)
chr2 (19-154)||(28773110-28773246)
chr2 (136-273)||(23167550-23167680)
chr2 (136-273)||(23578807-23578937)
chr2 (1-62)||(23167716-23167777)
chr2 (1-62)||(23578973-23579034)
chr2 (1-88)||(24280017-24280103)
chr2 (196-273)||(45619601-45619675)
chr2 (46-150)||(24280088-24280192)
[»] scaffold0305 (2 HSPs)
scaffold0305 (111-221)||(942-1053)
scaffold0305 (244-282)||(1050-1088)
[»] chr3 (5 HSPs)
chr3 (130-285)||(20419605-20419759)
chr3 (1-107)||(11834078-11834184)
chr3 (43-168)||(15855853-15855977)
chr3 (41-97)||(3294737-3294793)
chr3 (130-174)||(24901174-24901218)
[»] chr5 (6 HSPs)
chr5 (6-168)||(17362667-17362827)
chr5 (143-278)||(21311757-21311896)
chr5 (41-107)||(22949990-22950056)
chr5 (213-278)||(21298289-21298353)
chr5 (213-278)||(21303995-21304059)
chr5 (45-95)||(10178403-10178453)
[»] scaffold0135 (1 HSPs)
scaffold0135 (44-167)||(31001-31123)
[»] scaffold0205 (1 HSPs)
scaffold0205 (138-273)||(4997-5133)
[»] scaffold1826 (1 HSPs)
scaffold1826 (55-153)||(1007-1105)
[»] chr1 (2 HSPs)
chr1 (138-247)||(21223913-21224024)
chr1 (55-174)||(16674236-16674354)
[»] scaffold0053 (1 HSPs)
scaffold0053 (55-168)||(76435-76548)
[»] chr6 (2 HSPs)
chr6 (139-183)||(25782238-25782281)
chr6 (7-70)||(12484898-12484961)
[»] scaffold0258 (1 HSPs)
scaffold0258 (141-183)||(8773-8815)


Alignment Details
Target: scaffold0035 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 34823 - 34539
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34823 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 34724  T
Q  101 atatgacgtttttaacaaattaaccaatgtatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaaaggtcctcaccccatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723 atatgacgtttttaacaaattaaccaatgtatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaaaggtcctcaccccatga 34624  T
Q  201 tgcaacaaagaaatcatatcaccattgaatgcaaagtattcaaatcatctccactagatataaatatcctaaatcacctccactg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34623 tgcaacaaagaaatcatatcaccattgaatgcaaagtattcaaatcatctccactagatataaatatcctaaatcacctccactg 34539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39977 - 39713
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||   ||||||||| |||||| ||    
T  39977 agtacacatcttcacatattcaccaaatatcatcaagtgtacaattcaccaaactcaccaatgaacaaaaatcaccaaaaatcaccaaacgcataatcaa 39878  T
Q  101 atatgacgtttttaacaaa-ttaaccaatgtatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaa-aggtcctcaccccat 198  Q
    |||||||   ||||||||| | | | |||||||||||| |||||| |||| ||||||||||| |    | |||||||||||||| ||||| ||||| |||    
T  39877 atatgacacatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactcctacatggacactgtaccatcaccaacaacaggtcgtcacctcat 39778  T
Q  199 gatgcaacaaagaaatcatatcaccattgaatgcaaagtattcaaatcatctccactagatataaa 264  Q
    ||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||||| ||| ||||    
T  39777 gatgcaacaaaaacatcatataaccattgaatacaaagtattcaaatca-ctccactggatgtaaa 39713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 14302281 - 14302099
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||    
T  14302281 agtacacaccttcacatattcaccaaatatcaccaagtgtacaattcaccaaactcaccaatacacataaatcaccaa-gttcaccaaacacataatcaa 14302183  T
Q  101 atatgacgtttttaacaaatt-aaccaatgtatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaa 183  Q
    |||||||   |||||||| || | | |||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||    
T  14302182 atatgacacatttaacaatttcatcaaatgtatgtaatgcgcctagacatgactcctacatgcatgcggtaccatcaccaacaa 14302099  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 12182738 - 12182805
Alignment:
Q  141 cctagacacgactcctacatgcatgtggcaccatcaccaacaa-----aggtcctcaccccatgatgc 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||     ||||| ||||||||||||||    
T  12182738 cctagacacgactcctacatgcatgtggtaccatcaccaacaacgtctaggtcgtcaccccatgatgc 12182805  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 4598200 - 4598156
Alignment:
Q  139 cgcctagacacgactcctacatgcatgtggcaccatcaccaacaa 183  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  4598200 cgcctagacacgactcctacatgcatgtggtaccatcactaacaa 4598156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23638642 - 23638796
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    ||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||    
T  23638642 agtacacatcttcacatgttcaccgaatttcacaaagtgtacaattcaccaaactcaccaatgcatataaatcaccaaggttcaccaagcacataatcaa 23638741  T
Q  101 atatgacgtttttaacaa-attaaccaatgtatgtaatacgcctagacacgactc 154  Q
    ||||||||  |||||||| || | | |||||||||||| | |||||| |||||||    
T  23638742 atatgacgcatttaacaacatcaccaaatgtatgtaatgcacctagatacgactc 23638796  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 17624564 - 17624397
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    |||||||||||||| |  |||||| ||| |||||||||  ||||||||||||  ||||||||||||||||||||| ||||||||| || ||||||||  |    
T  17624564 agtacacatcttcatatgttcaccaaatttcaccaagtacacaattcaccaagttcaccaatgcacataaatcacaaaggttcactaagcacataatcca 17624465  T
Q  101 atatgacgtttttaacaaattaacc-aatgtatgtaatacgcctagacacgactcctacatgcatgtgg 168  Q
    ||||||    |||||||| || ||| |||||||| ||| ||| ||||||||||| ||| ||||||||||    
T  17624464 atatgaaacatttaacaacttcaccaaatgtatgcaatgcgcttagacacgact-ctatatgcatgtgg 17624397  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 24382816 - 24382914
Alignment:
Q  57 accaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaacc-aatgtatgtaatacgcctagacacgactc 154  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||   |||| || || ||| || ||||| ||||||||||||||||||||    
T  24382816 accaatgcacataaatcaccaaggttcaccaagcacataataaaatatgacgcaattaaaaacttcaccaaaggtatgcaatacgcctagacacgactc 24382914  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 23639440 - 23639372
Alignment:
Q  139 cgcctagacacgactcctacatgcatgtggcaccatcaccaaca--aaggtcctcaccccatgatgcaa 205  Q
    |||||| |||||||||||| ||||||| || ||| |||||||||  |||||| ||||| ||||||||||    
T  23639440 cgcctaaacacgactcctatatgcatgcggtaccgtcaccaacaacaaggtcgtcacctcatgatgcaa 23639372  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 9650597 - 9650778
Alignment:
Q  4 acacatcttcacacattcaccgaatatcaccaagtgtacaa-ttcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaat 102  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||| || |    
T  9650597 acacatcttcacatattcaccaaatatcaccaagtgtacaaattcaccaaactcatcaatgcacataaatcaccaaagtccaccaaacacataatcaatt 9650696  T
Q  103 atgacgtttttaacaaatt-aaccaatgtatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaa 183  Q
    |||| |  |||||||| || | | |||||||||||| ||| |||||||||||| ||||| |||| || ||| ||||||||||    
T  9650697 atgatgcatttaacaatttcatcaaatgtatgtaatgcgcttagacacgactcatacatacatgcggtaccgtcaccaacaa 9650778  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 9220350 - 9220472
Alignment:
Q  44 attcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcct 143  Q
    |||||||||  |||||||||||||||||||||||||||||||||| |||||||  ||||| |||   |||||  ||||| |  ||||||||||| |||||    
T  9220350 attcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcacataaacaaatacgacacatttaatcaattatcatatgtatgtaatgcgcct 9220449  T
Q  144 agacacgactcctacatgcatgtg 167  Q
    | |||||||| ||| |||||||||    
T  9220450 aaacacgact-ctatatgcatgtg 9220472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 9250951 - 9251049
Alignment:
Q  55 tcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcctagacacgact 153  Q
    ||||| || ||||||||||||||||||||||||| |||||||  ||||| |||   |||||  ||||| | |||||||||||| ||| || ||||||||    
T  9250951 tcaccgatccacataaatcaccaaggttcaccaagcacataaacaaatacgacacatttaatcaattatcaaatgtatgtaatgcgcataaacacgact 9251049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 9650938 - 9650995
Alignment:
Q  221 accattgaatgcaaagtattcaaatcatctccactagatataaatatcctaaatcacct 279  Q
    |||||||||| |||||||||||||||| | ||||| |||||||||||| |||| |||||    
T  9650938 accattgaatacaaagtattcaaatca-caccactggatataaatatcataaaccacct 9650995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 9197570 - 9197631
Alignment:
Q  18 attcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaag 79  Q
    ||||||| ||| ||||||||  |  ||||||||||  |||||||||||||||||||||||||    
T  9197570 attcaccaaatttcaccaagcatgtaattcaccaagttcaccaatgcacataaatcaccaag 9197631  T

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Target: scaffold1923 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold1923
Description:

Target: scaffold1923; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 1127 - 1230
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| || ||    
T  1127 agtacacatcttcacatattcaccaaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaaattcaccaaacacatgatcaa 1226  T
Q  101 atat 104  Q
    ||||    
T  1227 atat 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 17739569 - 17739693
Alignment:
Q  43 aattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcc 142  Q
    ||||||||||  |||| ||||||||||||||||||||||||| |||||||||||| |||||||||   |||||| ||||| | |||||||| ||| ||||    
T  17739569 aattcaccaagttcactaatgcacataaatcaccaaggttcatcaaacacataatcaaatatgacacatttaactaattatcaaatgtatgaaatgcgcc 17739668  T
Q  143 tagacacgactcctacatgcatgtgg 168  Q
    ||||||||||| ||| ||||||||||    
T  17739669 tagacacgact-ctatatgcatgtgg 17739693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 28773110 - 28773246
Alignment:
Q  19 ttcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaa 118  Q
    |||||| ||| |||||||||  || |||||||||| |||||||||||||||||||| |||| |||||||| || ||||| |||||| || | ||||||||    
T  28773110 ttcaccaaatttcaccaagtacaccattcaccaaattcaccaatgcacataaatcatcaagattcaccaagcatataattaaatataacatatttaacaa 28773209  T
Q  119 attaacc-aatgtatgtaatacgcctagacacgactc 154  Q
     |   || |||||||| ||| ||||||||||||||||    
T  28773210 ctgcgccaaatgtatgcaatgcgcctagacacgactc 28773246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 23167680 - 23167550
Alignment:
Q  136 atacgcctagacacgactcctacatgcatgtggcaccatcaccaacaa-aggtcctcaccccatgatgcaacaaagaaatcatatcaccattgaatgcaa 234  Q
    |||||||||||||||||||||| ||| |  ||| |||||||||||||| || || |||||||||||||||||||| | ||||||       ||||| |||    
T  23167680 atacgcctagacacgactcctatatggacatggtaccatcaccaacaacagctcatcaccccatgatgcaacaaaaacatcata-------tgaatacaa 23167588  T
Q  235 agtattcaaatcatctccactagatataaatatcctaaa 273  Q
    ||||||||||||| | ||| | |||||||||||||||||    
T  23167587 agtattcaaatca-caccaatggatataaatatcctaaa 23167550  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 273
Target Start/End: Complemental strand, 23578937 - 23578807
Alignment:
Q  136 atacgcctagacacgactcctacatgcatgtggcaccatcaccaacaa-aggtcctcaccccatgatgcaacaaagaaatcatatcaccattgaatgcaa 234  Q
    |||||||||||||||||||||| ||| |  ||| |||||||||||||| || || |||||||||||||||||||| | ||||||       ||||| |||    
T  23578937 atacgcctagacacgactcctatatggacatggtaccatcaccaacaacagctcatcaccccatgatgcaacaaaaacatcata-------tgaatacaa 23578845  T
Q  235 agtattcaaatcatctccactagatataaatatcctaaa 273  Q
    ||||||||||||| | ||| | |||||||||||||||||    
T  23578844 agtattcaaatca-caccaatggatataaatatcctaaa 23578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23167777 - 23167716
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaat 62  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||    
T  23167777 agtacacgtcttcacatattcaccaaatatcaccaagtgtacaactcaccaaattcaccaat 23167716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23579034 - 23578973
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaat 62  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||    
T  23579034 agtacacgtcttcacatattcaccaaatatcaccaagtgtacaactcaccaaattcaccaat 23578973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24280017 - 24280103
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaa 88  Q
    ||||||||| ||||||  |||||| ||| |||||||||  ||||||||||||  ||||||||||| |||||||||||| |||||||||    
T  24280017 agtacacattttcacatgttcaccaaatttcaccaagtacacaattcaccaagttcaccaatgcatataaatcaccaa-gttcaccaa 24280103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 45619675 - 45619601
Alignment:
Q  196 catgatgcaacaaagaaatcatatcaccattgaatgcaaagtattcaaatcatctccactagatataaatatcctaaa 273  Q
    |||||||||||||| | ||||||||  |||||||| ||||||||||||||| || ||||| |||||||||||||||||    
T  45619675 catgatgcaacaaaaacatcatatc--cattgaatacaaagtattcaaatc-tcaccactggatataaatatcctaaa 45619601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 24280088 - 24280192
Alignment:
Q  46 tcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaa-attaaccaatgtatgtaatacgccta 144  Q
    |||||||  ||||||||||| |||||||||||| ||||||||| ||| |||| ||||||||||  |||||||| || | | |||||||||||| || |||    
T  24280088 tcaccaagttcaccaatgcatataaatcaccaa-gttcaccaagcacgtaatcaaatatgacgcatttaacaacatcaccaaatgtatgtaatgcgtcta 24280186  T
Q  145 gacacg 150  Q
    ||||||    
T  24280187 gacacg 24280192  T

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Target: scaffold0305 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 942 - 1053
Alignment:
Q  111 tttaacaaattaaccaa-tgtatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaaaggtcctcaccccatgatgcaacaaa 209  Q
    ||||||||||| ||||| ||| | |||| |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||||||||||||||    
T  942 tttaacaaattcaccaaatgtctttaatgcgcctagacacgactcctacatgcatgtgataccattaccaacaaaggtcgtcacctcatgatgcaacaaa 1041  T
Q  210 gaaatcatatca 221  Q
     | |||||||||    
T  1042 aatatcatatca 1053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 1050 - 1088
Alignment:
Q  244 atcatctccactagatataaatatcctaaatcacctcca 282  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  1050 atcatctccactggatataaatatcctaaatcacctcca 1088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 285
Target Start/End: Original strand, 20419605 - 20419759
Alignment:
Q  130 tatgtaatacgcctagacacgactcctacatgcatgtggcaccatcaccaacaaaggtcctcaccccatgatgcaacaaagaaatcatatcaccattgaa 229  Q
    |||| ||| |||||||||||||||| || ||||||  || |||||| |||| || |||  ||||  |||||||||||||| | ||||||| |||||||||    
T  20419605 tatgcaatgcgcctagacacgactcatatatgcatacggtaccatcgccaaaaatggttgtcacttcatgatgcaacaaaaacatcatataaccattgaa 20419704  T
Q  230 tgcaaagtattcaaatcatctccactagatataaatatcctaaatcacctccactg 285  Q
    | |||||||||||||||| | ||||| ||||||||||||||||| |||| ||||||    
T  20419705 tacaaagtattcaaatca-caccactggatataaatatcctaaaccaccgccactg 20419759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 11834184 - 11834078
Alignment:
Q  1 agtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaa 100  Q
    ||||||||||||||||  |||||| ||| ||||||| |  || |||||||||| |||||||||||||||||||| ||||||||||||| || ||||| ||    
T  11834184 agtacacatcttcacatgttcaccaaatttcaccaaatacaccattcaccaaattcaccaatgcacataaatcatcaaggttcaccaagcatataattaa 11834085  T
Q  101 atatgac 107  Q
    |||||||    
T  11834084 atatgac 11834078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 15855853 - 15855977
Alignment:
Q  43 aattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcc 142  Q
    ||||||||||  ||| |||||||| ||||||||||||||||||||| |||||||| |||||  ||   |||||  ||||  | |||||||||||| | ||    
T  15855853 aattcaccaacttcatcaatgcacgtaaatcaccaaggttcaccaagcacataatcaaatacaacacatttaatcaattttcaaatgtatgtaatgcacc 15855952  T
Q  143 tagacacgactcctacatgcatgtgg 168  Q
    ||||||||||| ||| ||||||||||    
T  15855953 tagacacgact-ctatatgcatgtgg 15855977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 3294793 - 3294737
Alignment:
Q  41 acaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataat 97  Q
    ||||||||||||  |||||||||| || ||||||||||||||||||||  |||||||    
T  3294793 acaattcaccaagttcaccaatgctcagaaatcaccaaggttcaccaatgacataat 3294737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 24901218 - 24901174
Alignment:
Q  130 tatgtaatacgcctagacacgactcctacatgcatgtggcaccat 174  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||    
T  24901218 tatgttatgcgcctagacacgactcctacatccatgtggtaccat 24901174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 17362667 - 17362827
Alignment:
Q  6 acatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatg 105  Q
    ||||||||||| ||||||| ||| |||||||||  | ||||||||||  | | |||||||||||||||||||||||||||||| ||||||||  ||||||    
T  17362667 acatcttcacatattcaccaaatttcaccaagtacataattcaccaagttgatcaatgcacataaatcaccaaggttcaccaagcacataat-caatatg 17362765  T
Q  106 acgtttttaacaaattaaccaatgtatgtaatacgcctagacacgactcctacatgcatgtgg 168  Q
    ||    ||||| ||||| | |||||||| ||| ||||||||||||||| ||| ||||||||||    
T  17362766 acacacttaactaattatcaaatgtatgcaatgcgcctagacacgact-ctatatgcatgtgg 17362827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 21311757 - 21311896
Alignment:
Q  143 tagacacgactcctacatgcatgtggcaccatcaccaacaa-----aggtcctcaccccatgatgcaacaaagaa-atcatatcaccattgaatgcaaag 236  Q
    ||||||||||| ||| |||||||||| |||| ||| |||||     ||||| |||||||||||||| | | |||| |||||||||||||||||| |||||    
T  21311757 tagacacgactgctatatgcatgtggtaccaacactaacaacgtctaggtcgtcaccccatgatgcca-acagaacatcatatcaccattgaatacaaag 21311855  T
Q  237 tattcaaatcatctccactagatataaatatcctaaatcacc 278  Q
    ||||||||||| | |||||  |||||||||||||||||||||    
T  21311856 tattcaaatca-caccactgaatataaatatcctaaatcacc 21311896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 22949990 - 22950056
Alignment:
Q  41 acaattcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgac 107  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  22949990 acaattcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcatataatcaaatatgac 22950056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 21298289 - 21298353
Alignment:
Q  213 atcatatcaccattgaatgcaaagtattcaaatcatctccactagatataaatatcctaaatcacc 278  Q
    |||||||||||||||||| |||||||||||||||| | |||||  |||||||||||||||||||||    
T  21298289 atcatatcaccattgaatacaaagtattcaaatca-caccactgaatataaatatcctaaatcacc 21298353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 21303995 - 21304059
Alignment:
Q  213 atcatatcaccattgaatgcaaagtattcaaatcatctccactagatataaatatcctaaatcacc 278  Q
    |||||||||||||||||| |||||||||||||||| | |||||  |||||||||||||||||||||    
T  21303995 atcatatcaccattgaatacaaagtattcaaatca-caccactgaatataaatatcctaaatcacc 21304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 10178453 - 10178403
Alignment:
Q  45 ttcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacata 95  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  10178453 ttcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcacata 10178403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 31001 - 31123
Alignment:
Q  44 attcaccaaactcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcct 143  Q
    |||||||||  |||||||||||||||||||||||||||||||||| |||||||  ||||| |||   |||||  ||||| |  ||||||||||| |||||    
T  31001 attcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcacataaacaaatacgacacatttaatcaattatcatatgtatgtaatgcgcct 31100  T
Q  144 agacacgactcctacatgcatgtg 167  Q
    | |||||||| ||| |||||||||    
T  31101 aaacacgact-ctatatgcatgtg 31123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 4997 - 5133
Alignment:
Q  138 acgcctagacacgactcctacatgcatgtggcaccatcaccaacaa----aggtcctcaccccatgatgcaacaaagaaatcatatcaccattgaatgca 233  Q
    |||||||||||||||||||| ||| |   || ||||||||||||||    ||||| ||||| |||||||||||||| | ||||||  | |||||||| ||    
T  4997 acgcctagacacgactcctatatggacacggtaccatcaccaacaacaacaggtcgtcacctcatgatgcaacaaaaacatcata--atcattgaataca 5094  T
Q  234 aagtattcaaatcatctccactagatataaatatcctaaa 273  Q
    |||||||||||||| | |||||  ||||||||||||||||    
T  5095 aagtattcaaatca-caccactgaatataaatatcctaaa 5133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 1007 - 1105
Alignment:
Q  55 tcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcctagacacgact 153  Q
    |||||||||||||||||||||||||||||| ||| |||||||  ||||| |||   |||||  ||||| | |||||||||||| |||||| ||||||||    
T  1007 tcaccaatgcacataaatcaccaaggttcatcaagcacataaataaatacgacacatttaatcaattatcaaatgtatgtaatgcgcctaaacacgact 1105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 21223913 - 21224024
Alignment:
Q  138 acgcctagacacgactcctacatgcatgtggcaccatcaccaacaa----aggtcctcaccccatgatgcaacaaagaaatcatatcaccattgaatgca 233  Q
    ||||||||| |||||| ||| ||| |  ||| ||||||||||||||    ||||| |||||||||||||||||||| | ||||||  |||||||||| ||    
T  21223913 acgcctagatacgacttctatatggacatggtaccatcaccaacaacaacaggtcgtcaccccatgatgcaacaaaaacatcata--accattgaataca 21224010  T
Q  234 aagtattcaaatca 247  Q
    ||||||||||||||    
T  21224011 aagtattcaaatca 21224024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 16674236 - 16674354
Alignment:
Q  55 tcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaattaaccaatgtatgtaatacgcctagacacgactc 154  Q
    |||||||||||||||  |||||||| |||||||| || ||| | | ||||| |   |||||  ||||| | |||||||||||| |||||||||||||||     
T  16674236 tcaccaatgcacatatgtcaccaagattcaccaagcatatactcatatatggcacatttaaacaattatcaaatgtatgtaatgcgcctagacacgact- 16674334  T
Q  155 ctacatgcatgtggcaccat 174  Q
    ||| |||||||||| |||||    
T  16674335 ctatatgcatgtggtaccat 16674354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 76548 - 76435
Alignment:
Q  55 tcaccaatgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaatt-aaccaatgtatgtaatacgcctagacacgact 153  Q
    ||||||||||| |||||||| |||||||||||||  | ||||| |||||||||   |||||||| || | | ||||||||  || |||||||||||||||    
T  76548 tcaccaatgcatataaatcatcaaggttcaccaaggatataattaaatatgacacatttaacaacttcatcaaatgtatgctatgcgcctagacacgact 76449  T
Q  154 cctacatgcatgtgg 168  Q
     ||| ||||||||||    
T  76448 -ctatatgcatgtgg 76435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 25782281 - 25782238
Alignment:
Q  139 cgcctagacacgactcctacatgcatgtggcaccatcaccaacaa 183  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  25782281 cgcctagacacgactcctaca-gcatgtggtaccatcaccaacaa 25782238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 12484898 - 12484961
Alignment:
Q  7 catcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaatgcacataa 70  Q
    |||||||| | ||||| | ||| ||||||||| |||||||||||||  ||||||||||||||||    
T  12484898 catcttcatatattcaacaaatttcaccaagtatacaattcaccaagttcaccaatgcacataa 12484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 8773 - 8815
Alignment:
Q  141 cctagacacgactcctacatgcatgtggcaccatcaccaacaa 183  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  8773 cctagacacgactcctacatgcatgtggtactgtcaccaacaa 8815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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