View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_38 (Length: 308)

Name: NF21683_high_38
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_38
NF21683_high_38
[»] chr5 (1 HSPs)
chr5 (20-308)||(39076163-39076443)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 39076443 - 39076163
Alignment:
Q  20 gacatcatcattgcattgtctaaacatttacttgcactaatttgtatttaattgactaagtatatgcagctcaacaattatgcgaagaaaacactgaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076443 gacatcatcattgcattgtctaaacatttacttgcactaatttgtttttaattgactaagtatatgcagctcaacaattatgcgaagaaaacactgaatg 39076344  T
Q  120 aagacttatatagttaagcaattaatgtccatgcatttagcttgttaagacaaattcatatttgttcgtgcaatcgaaaaagctttttgttcaacctgca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076343 aagacttatatagttaagcaattaatgtccatgcatttagcttgttaagacaaattcatatttgttcgtgcaatcgaaaaagctttttgttcaacctgca 39076244  T
Q  220 cttgttttactttttcataaatgcnnnnnnnnnnnnnnnnnctgcggctgcaattggtcttagataaatgatgaaattgaaaatgatgg 308  Q
    ||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076243 cttgttttactttttcataaatgc--------aaaaaaaaactgcggctgcaattggtcttagataaatgatgaaattgaaaatgatgg 39076163  T

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