View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_40 (Length: 300)

Name: NF21683_high_40
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_40
NF21683_high_40
[»] chr4 (7 HSPs)
chr4 (1-293)||(35326922-35327214)
chr4 (158-216)||(35335063-35335121)
chr4 (170-222)||(16592168-16592220)
chr4 (170-222)||(16602672-16602724)
chr4 (175-208)||(5342486-5342519)
chr4 (181-211)||(25222982-25223012)
chr4 (131-212)||(51457925-51458006)
[»] chr5 (1 HSPs)
chr5 (161-268)||(20964465-20964572)
[»] chr3 (1 HSPs)
chr3 (161-268)||(3175348-3175455)
[»] chr1 (1 HSPs)
chr1 (161-268)||(24540693-24540800)
[»] chr8 (1 HSPs)
chr8 (137-207)||(38542112-38542182)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 35327214 - 35326922
Alignment:
Q  1 ccatcatcctcaccctcctgctcctgcacctgtccacacacctgttgctccagcacatccaccactacacccacctgttcacacccctgttgttccaact 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35327214 ccatcatcctcaccctcctgctcctacacctgtccacacacctgttgctccagcacatccaccactacacccacccgttcacacccctgttgttccaact 35327115  T
Q  101 caccctccattacacccacctgctccagcacacccaccattgcatcctactcccctccctagaagctttatagctgttcaaggtgttgtttatgtcaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35327114 caccctccattacacccacctgctccagcacacccaccattgcatcctactcccctccctagaagctttatagctgttcaaggtgttgtttatgtcaaat 35327015  T
Q  201 cttgcaagtatgctggtgttgatactctcttgggagctactcaaattcttggtttgtttctcaacttttattttaacttctatctctctgctt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35327014 cttgcaagtatgctggtgttgatactctcttgggagctactcaaattcttggtttgtttctcaacttttattttaacttctctctctctgctt 35326922  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 35335121 - 35335063
Alignment:
Q  158 cctagaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctgg 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  35335121 cctagaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgctgg 35335063  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 16592168 - 16592220
Alignment:
Q  170 atagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctggtgttga 222  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  16592168 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttga 16592220  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 16602672 - 16602724
Alignment:
Q  170 atagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctggtgttga 222  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  16602672 atagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttga 16602724  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 5342486 - 5342519
Alignment:
Q  175 tgttcaaggtgttgtttatgtcaaatcttgcaag 208  Q
    ||||||||||||||||||||||||||||||||||    
T  5342486 tgttcaaggtgttgtttatgtcaaatcttgcaag 5342519  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 211
Target Start/End: Original strand, 25222982 - 25223012
Alignment:
Q  181 aggtgttgtttatgtcaaatcttgcaagtat 211  Q
    |||||||||||||||||||||||||||||||    
T  25222982 aggtgttgtttatgtcaaatcttgcaagtat 25223012  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 51457925 - 51458006
Alignment:
Q  131 cacccaccattgcatcctactcccctccctagaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatg 212  Q
    ||||||| ||||||||| |||||   |||||||||||| |  | |||||||||| ||||| |||||||||| ||| ||||||    
T  51457925 cacccacaattgcatcccactccttgccctagaagcttcaatgttgttcaaggtattgttcatgtcaaatcatgcgagtatg 51458006  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 20964465 - 20964572
Alignment:
Q  161 agaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctggtgttgatactctcttgggagctactcaaattcttggtttgtttc 260  Q
    |||||||| |||| |||| |||| |||||||||||||||||||||||  ||  ||||||||| || ||   ||||||||| | | |||||||||||||||    
T  20964465 agaagcttgatagttgttgaaggagttgtttatgtcaaatcttgcaaccataatggtgttgacaccctaaagggagctacaccacttcttggtttgtttc 20964564  T
Q  261 tcaacttt 268  Q
    ||||||||    
T  20964565 tcaacttt 20964572  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 3175455 - 3175348
Alignment:
Q  161 agaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctggtgttgatactctcttgggagctactcaaattcttggtttgtttc 260  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||  || | |||||||| ||  |   ||||||||| |   || ||||||||||||    
T  3175455 agaagcttgatagctgttgaaggtgttgtttatgtcaaatcatgcaaccataccggtgttgacaccttaaagggagctacacctctttttggtttgtttc 3175356  T
Q  261 tcaacttt 268  Q
    ||||||||    
T  3175355 tcaacttt 3175348  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 24540800 - 24540693
Alignment:
Q  161 agaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgctggtgttgatactctcttgggagctactcaaattcttggtttgtttc 260  Q
    |||| ||| ||||||||| |||| ||||||||||||||||| |||||  || |||||||||| || ||   ||||||||| | | ||| |||||||||||    
T  24540800 agaaacttgatagctgttgaaggagttgtttatgtcaaatcatgcaaccatactggtgttgacaccctaaagggagctacaccacttcctggtttgtttc 24540701  T
Q  261 tcaacttt 268  Q
    | ||||||    
T  24540700 ttaacttt 24540693  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 38542182 - 38542112
Alignment:
Q  137 ccattgcatcctactcccctccctagaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaa 207  Q
    ||||||| ||| |||||  ||||||||||  | || | ||||| |||||||||||||||||||||||||||    
T  38542182 ccattgcgtcccactcctgtccctagaagtgtcatggttgttcgaggtgttgtttatgtcaaatcttgcaa 38542112  T

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