View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21683_high_6 (Length: 420)

Name: NF21683_high_6
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21683_high_6
NF21683_high_6
[»] chr4 (7 HSPs)
chr4 (84-411)||(8254252-8254579)
chr4 (84-411)||(8267670-8267997)
chr4 (140-370)||(38929027-38929257)
chr4 (174-265)||(31051204-31051295)
chr4 (147-375)||(46699456-46699681)
chr4 (85-132)||(28966403-28966450)
chr4 (204-253)||(30963892-30963941)
[»] chr1 (9 HSPs)
chr1 (140-411)||(19597812-19598080)
chr1 (140-279)||(46693414-46693552)
chr1 (198-360)||(24450444-24450605)
chr1 (204-255)||(41919909-41919960)
chr1 (292-375)||(50590073-50590156)
chr1 (207-255)||(31586287-31586335)
chr1 (319-375)||(46693961-46694017)
chr1 (218-254)||(24685106-24685142)
chr1 (88-132)||(50589807-50589851)
[»] chr5 (4 HSPs)
chr5 (140-375)||(27712307-27712542)
chr5 (140-398)||(22687153-22687411)
chr5 (153-373)||(697615-697834)
chr5 (87-132)||(27712614-27712659)
[»] chr2 (3 HSPs)
chr2 (156-375)||(2062149-2062368)
chr2 (204-277)||(31902967-31903040)
chr2 (292-374)||(16959201-16959283)
[»] chr7 (6 HSPs)
chr7 (207-373)||(37792640-37792806)
chr7 (153-375)||(10243439-10243660)
chr7 (297-349)||(38165702-38165754)
chr7 (198-265)||(38484992-38485059)
chr7 (202-279)||(1320127-1320204)
chr7 (204-277)||(3420242-3420315)
[»] chr6 (2 HSPs)
chr6 (85-226)||(13099089-13099232)
chr6 (204-265)||(12793554-12793615)
[»] chr8 (4 HSPs)
chr8 (154-375)||(37987465-37987685)
chr8 (204-255)||(34866640-34866691)
chr8 (207-255)||(9519068-9519116)
chr8 (204-255)||(10551755-10551806)
[»] chr3 (4 HSPs)
chr3 (154-360)||(45163256-45163461)
chr3 (204-276)||(1653499-1653571)
chr3 (154-253)||(2394726-2394825)
chr3 (204-277)||(17501816-17501889)
[»] scaffold0499 (1 HSPs)
scaffold0499 (85-217)||(5971-6105)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 84 - 411
Target Start/End: Complemental strand, 8254579 - 8254252
Alignment:
Q  84 aggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggaag 183  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8254579 aggttcagcaggaacaagagcaagacaatgaggttgatagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggcag 8254480  T
Q  184 caacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgca 283  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| | ||||||||| |||||||||||||| ||    
T  8254479 caacctgaacacagaccaaaaggaagatgaaacccaacaacaagacacgggcatcgacgtcggtctgaagtggagacacaacctagatcgtaaacataca 8254380  T
Q  284 ttcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgaccaccaacccgacccaaaaaggtctgaaga 383  Q
    | ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  8254379 tccgtcagtgacgaggagaaggcgtctggcgctggagtaaacaacaatcaagccaaaaagctacaagagaccaccaacccgacccaaaaagatctgaaga 8254280  T
Q  384 tacataaatgactaccactgtcaacacg 411  Q
    ||||||||||||||| || |||||||||    
T  8254279 tacataaatgactactaccgtcaacacg 8254252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 84 - 411
Target Start/End: Complemental strand, 8267997 - 8267670
Alignment:
Q  84 aggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggaag 183  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8267997 aggttcagcaggaacaagagcaagacaatgaggttgatagtctccaaggggagtaggacaaagactacacctccaaaccccctcgccaagaaacaggcag 8267898  T
Q  184 caacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgca 283  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| | ||||||||| |||||||||||||| ||    
T  8267897 caacctgaacacagaccaaaaggaagatgaaacccaacaacaagacacgggcatcgacgtcggtctgaagtggagacacaacctagatcgtaaacataca 8267798  T
Q  284 ttcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgaccaccaacccgacccaaaaaggtctgaaga 383  Q
    | ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  8267797 tccgtcagtgacgaggagaaggcgtctggcgctggagtaaacaacaatcaagccaaaaagctacaagagaccaccaacccgacccaaaaagatctgaaga 8267698  T
Q  384 tacataaatgactaccactgtcaacacg 411  Q
    ||||||||||||||| || |||||||||    
T  8267697 tacataaatgactactaccgtcaacacg 8267670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 38929257 - 38929027
Alignment:
Q  140 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 239  Q
    ||||||||||||||   |||| | ||||| ||||||||||| | |||||  ||   ||| |||||||||||||| | | |||||||| |||||||||  |    
T  38929257 gacaaagactacactgtcaaatcacctcgtcaagaaacaggcaacaacccaaagctaaatcaaaaggaagatgataactaacaacaaaacacgggcagtg 38929158  T
Q  240 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 339  Q
    |||||||| ||||||| | ||||||| ||||||| ||||| |  | |    ||||| ||||| || |||||| |||||||||||||||||| ||||||||    
T  38929157 acgccggtctgaagcggaaacacaacctagatcgaaaacaggtttccaccggtgacaaggaggagacgtctggcgccggagtaaacaacaaccaagccaa 38929058  T
Q  340 aaagctacaagtgaccaccaacccgacccaa 370  Q
    ||||| ||||| | |||||||| ||||||||    
T  38929057 aaagcgacaagagtccaccaacacgacccaa 38929027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 31051204 - 31051295
Alignment:
Q  174 aaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaac 265  Q
    ||||||| ||||||   |||||||| | ||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||| | |||||||    
T  31051204 aaacaggtagcaacaccaacacaaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaac 31051295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 375
Target Start/End: Original strand, 46699456 - 46699681
Alignment:
Q  147 actacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccgg 246  Q
    ||||| || ||||||| |||| |||||| ||||| | |||||  |||||| | ||| |||||||||||  |||||||||| ||||||||| ||||||||     
T  46699456 actacgccgccaaaccacctcaccaagacacaggcatcaacca-aacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccga 46699554  T
Q  247 tttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagcta 346  Q
    ||||||||| | || |||    |  |||||  | |||  |  ||||||| |||||||||||||   ||||| |||||| ||||| ||| ||||||||| |    
T  46699555 tttgaagcggaaactcaaacccggacgtaa--aggcacccactagtgacaaggagaaggcgtccatcgccgaagtaaataacaaccaaaccaaaaagcaa 46699652  T
Q  347 caagtgaccaccaacccgacccaaaaagg 375  Q
    |||| | |||||||| | |||||||||||    
T  46699653 caagagcccaccaacacaacccaaaaagg 46699681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 28966450 - 28966403
Alignment:
Q  85 ggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaagg 132  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||||    
T  28966450 ggttcagcagacacaagagcaagacaacgaggttgaaagtctccaagg 28966403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 30963941 - 30963892
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 253  Q
    ||||||| |||| ||||| |||| ||||||||| ||||||||||||||||    
T  30963941 aggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaag 30963892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 140 - 411
Target Start/End: Complemental strand, 19598080 - 19597812
Alignment:
Q  140 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 239  Q
    ||||||| |||| |||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  19598080 gacaaaggctacgcctccaaaccacctcgccaagaaacaggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaacg 19597981  T
Q  240 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 339  Q
    |||||||| ||||| | | ||||||| |||||||||||||  ||| |||  || || ||||||||||||||   |||| |||||||||||| ||||||||    
T  19597980 acgccggtctgaagtggaaacacaacctagatcgtaaacagacatccgtcggtaacaaggagaaggcgtctcgtgccgaagtaaacaacaaccaagccaa 19597881  T
Q  340 aaagctacaagtgaccaccaacccgacccaaaaaggtctgaagatacataaatgactaccactgtcaacacg 411  Q
    ||| | ||||| | |||  ||   ||||||||||| ||| ||| ||||| |||||||||||| | |||||||    
T  19597880 aaaac-acaagagccca--aaaaggacccaaaaagatctaaaggtacatgaatgactaccaccgccaacacg 19597812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 46693414 - 46693552
Alignment:
Q  140 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 239  Q
    ||||| ||| || |||||||||| ||||||||||||||||| | | |||| |||||| ||| ||||| |||||||| | |||||||  ||||||||| ||    
T  46693414 gacaaggacaacgcctccaaaccacctcgccaagaaacaggcatcgacctaaacacagacccaaagg-agatgaaaactaacaacagaacacgggcagcg 46693512  T
Q  240 acgccggtttgaagcgaagacacaacttagatcgtaaaca 279  Q
    |||||||| ||||||| | || |||| || ||||||||||    
T  46693513 acgccggtctgaagcggaaactcaacctaaatcgtaaaca 46693552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 360
Target Start/End: Original strand, 24450444 - 24450605
Alignment:
Q  198 accaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacga 297  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||   |||| || ||| ||||||||| ||||  |   ||||| |    
T  24450444 accaaaaggaagatgaaacccaacaacaaaacacgggcagcgacg-cagtttgaagcgggaacactacctaggtcgtaaacaggcatctgacggtgacaa 24450542  T
Q  298 ggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgaccaccaa 360  Q
    ||||||||| |||  ||||  |||||||| ||| ||| ||||||||  ||||| | |||||||    
T  24450543 ggagaaggcatctagcgccacagtaaacaccaaccaatccaaaaagtgacaagagcccaccaa 24450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 41919960 - 41919909
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 255  Q
    |||||||||||| || ||||||| |||||||||||||||| |||||||||||    
T  41919960 aggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcg 41919909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 50590073 - 50590156
Alignment:
Q  292 tgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgaccaccaacccgacccaaaaagg 375  Q
    |||| |||| ||||||||  |||||| |||||||||||| |||||||||| || ||||| |  ||||||| |||||||||||||    
T  50590073 tgacaaggaaaaggcgtccaacgccgaagtaaacaacaaccaagccaaaatgcgacaagagcacaccaacgcgacccaaaaagg 50590156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 31586287 - 31586335
Alignment:
Q  207 aagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 255  Q
    |||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  31586287 aagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcg 31586335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 46693961 - 46694017
Alignment:
Q  319 agtaaacaacaatcaagccaaaaagctacaagtgaccaccaacccgacccaaaaagg 375  Q
    |||||||||||| ||| ||||||||| ||||| | |||||||| |||||||||||||    
T  46693961 agtaaacaacaaccaaaccaaaaagcgacaagagcccaccaacacgacccaaaaagg 46694017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 24685106 - 24685142
Alignment:
Q  218 caacaacaagacacgggcaacgacgccggtttgaagc 254  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  24685106 caacaacaaaacacgggcagcgacgccggtttgaagc 24685142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 50589807 - 50589851
Alignment:
Q  88 tcagcaagcacaagagcaagacaatgaggttgaaagtctccaagg 132  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||    
T  50589807 tcagcaagcacaagagcaagacaacaaggttgatagtcttcaagg 50589851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 375
Target Start/End: Complemental strand, 27712542 - 27712307
Alignment:
Q  140 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 239  Q
    ||||||||| || |||||||||| ||||||||||||||||  | |||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  27712542 gacaaagaccacgcctccaaaccacctcgccaagaaacagacaacaacccaaacacagaccaaaaggaagatgaaacccaacaacaaaacacgggcaacg 27712443  T
Q  240 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 339  Q
    |||||||| |||||   | ||||||  ||||||||||||| |||  |    ||||| ||||||||||||||| | |||||||||||||||| ||||||||    
T  27712442 acgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggagaaggcgtctggcaccggagtaaacaacaaccaagccaa 27712343  T
Q  340 aaagctacaagtgaccaccaacccgacccaaaaagg 375  Q
    ||||| ||||| | |||||||| | |||| ||||||    
T  27712342 aaagcaacaagagcccaccaacactaccctaaaagg 27712307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 140 - 398
Target Start/End: Original strand, 22687153 - 22687411
Alignment:
Q  140 gacaaagactacacctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacg 239  Q
    |||||||||||| || ||||||| ||||||||||||||| |  | ||||  |||||| | |||||||||||||||||| |||||||| ||||| ||| ||    
T  22687153 gacaaagactacgccgccaaaccacctcgccaagaaacatgttgaaacccaaacacatatcaaaaggaagatgaaacctaacaacaaaacacgagcagcg 22687252  T
Q  240 acgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaa 339  Q
    || |  || ||||||| | ||||||| | ||||||||||| |||| ||  |||||| |||||||||||||  ||||||||||||||||||| |||| |||    
T  22687253 acacaagtctgaagcggaaacacaacctggatcgtaaacaggcatccgccagtgacaaggagaaggcgtccaacgccggagtaaacaacaaccaagtcaa 22687352  T
Q  340 aaagctacaagtgaccaccaacccgacccaaaaaggtctgaagatacataaatgactac 398  Q
    ||||| | ||| | |||||||| ||||| |||| | | ||||| ||||| || ||||||    
T  22687353 aaagcgaaaagagcccaccaacacgacctaaaatgatttgaaggtacatgaaagactac 22687411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 373
Target Start/End: Complemental strand, 697834 - 697615
Alignment:
Q  153 cctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaa 252  Q
    |||||||||| ||||| ||||||||| | |   |||| |||||| |||||||||| ||||||||| |||||||  ||||||||| |||||||||| ||||    
T  697834 cctccaaaccacctcgtcaagaaacaagcattgacctaaacacataccaaaagga-gatgaaacctaacaacagcacacgggcagcgacgccggtctgaa 697736  T
Q  253 gcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtg 352  Q
    ||| | || |||| ||||||||||||| |||   |  |||||| |||||||||| || | | ||| |||||||||||| ||| | ||||||| ||||| |    
T  697735 gcggaaactcaacctagatcgtaaacaggcacatgccagtgacaaggagaaggcttccggcaccgaagtaaacaacaaccaaacaaaaaagcgacaagag 697636  T
Q  353 accaccaacccgacccaaaaa 373  Q
     |||||||| |||||||||||    
T  697635 cccaccaacacgacccaaaaa 697615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 27712659 - 27712614
Alignment:
Q  87 ttcagcaagcacaagagcaagacaatgaggttgaaagtctccaagg 132  Q
    ||||||| |||||||||||| |||| ||||||||||||||| ||||    
T  27712659 ttcagcaggcacaagagcaatacaacgaggttgaaagtctctaagg 27712614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 375
Target Start/End: Complemental strand, 2062368 - 2062149
Alignment:
Q  156 ccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 255  Q
    ||||||| |||| ||||||||| |||||| ||   |||||| | ||| || |||||| ||||||||||||| ||||||||| |||||||||| |||||||    
T  2062368 ccaaaccacctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcg 2062269  T
Q  256 aagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgacc 355  Q
     | |||||||  |||||||||||| | || |    | ||| ||||||||||||| ||| ||||| |||||||||| ||||||||||||| ||||| | ||    
T  2062268 gaaacacaacccagatcgtaaacaggtatccaccggagacaaggagaaggcgtccgacaccggaataaacaacaaccaagccaaaaagcgacaagagccc 2062169  T
Q  356 accaacccgacccaaaaagg 375  Q
    ||||||  ||||||||||||    
T  2062168 accaacatgacccaaaaagg 2062149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 31902967 - 31903040
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaa 277  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | ||||||| |||||| ||||    
T  31902967 aggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcataaa 31903040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 16959283 - 16959201
Alignment:
Q  292 tgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgaccaccaacccgacccaaaaag 374  Q
    |||| |||| |||||||| ||||||  |||||||||||| |||||||||| || |||||   |||||||| ||||||||||||    
T  16959283 tgacaaggaaaaggcgtccgacgcccaagtaaacaacaaccaagccaaaatgcaacaagatcccaccaacacgacccaaaaag 16959201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 373
Target Start/End: Complemental strand, 37792806 - 37792640
Alignment:
Q  207 aagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggc 306  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||| | |||||||  | |||||||| | ||| |||   ||||| ||||| ||||    
T  37792806 aagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacccatatcgtaaaaaggcaatcgccggtgacaaggagtaggc 37792707  T
Q  307 gtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtgaccaccaacccgacccaaaaa 373  Q
    ||||||||| |||||| ||||||| |||||||||||||  |||| | |||| ||| |||||||||||    
T  37792706 gtctgacgctggagtagacaacaaccaagccaaaaagcagcaagagcccacaaacacgacccaaaaa 37792640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 375
Target Start/End: Complemental strand, 10243660 - 10243439
Alignment:
Q  153 cctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaa 252  Q
    |||| ||||| ||||||||||||||| | | | || | |||||| |||||||||| ||||||||| ||||| |  |||||||||  ||||| ||| ||||    
T  10243660 cctctaaaccacctcgccaagaaacaagcatcgacttaaacacagaccaaaagga-gatgaaacctaacaatagaacacgggcagtgacgctggtctgaa 10243562  T
Q  253 gcgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtg 352  Q
    ||| | || |||| |||||||||| || |||  |||  |||||||| ||||||||||| || ||| | |||||||||| ||| |  |||||| |||||      
T  10243561 gcggaaactcaacctagatcgtaagcaggcacccgtcggtgacgagaagaaggcgtctaacaccgaattaaacaacaaccaaacagaaaagcgacaagat 10243462  T
Q  353 accaccaacccgacccaaaaagg 375  Q
     |||||||| | |||||||||||    
T  10243461 cccaccaacacaacccaaaaagg 10243439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 38165702 - 38165754
Alignment:
Q  297 aggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaa 349  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  38165702 aggagaaggcgtctgacgccggagtaaacaacaacccaaccaaaaagctacaa 38165754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 38485059 - 38484992
Alignment:
Q  198 accaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaac 265  Q
    ||||| ||||||| ||||||  ||||||| ||| ||||| |||||||||||||||||| | |||||||    
T  38485059 accaagaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaac 38484992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 1320204 - 1320127
Alignment:
Q  202 aaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaaca 279  Q
    ||||||||  ||||||||||||||| |||||| || ||||||||||  |||| |   ||||||| |||||||||||||    
T  1320204 aaaggaagccgaaacccaacaacaaaacacggacatcgacgccggtccgaagtgggaacacaacctagatcgtaaaca 1320127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 3420242 - 3420315
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaa 277  Q
    ||||||| |||||| |||||||| ||||| ||| ||||||||||| |||||| |  |||||| |||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaa 3420315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 13099089 - 13099232
Alignment:
Q  85 ggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtag-gacaaagactacacctccaaaccccctcgccaagaaa-caggaa 182  Q
    ||||||||| ||||||||| ||| ||| ||||||||||||||| ||||  || || |||||||||||| || ||||||| || |||||||||| |||| |    
T  13099089 ggttcagcaggcacaagagaaagtcaacgaggttgaaagtctcaaaggaaagaagagacaaagactacgccaccaaaccaccacgccaagaaaacaggca 13099188  T
Q  183 gcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaa 226  Q
    ||||||  |||||||||||||||||| |||||||||||||||||    
T  13099189 gcaacccaaacacaaaccaaaaggaatatgaaacccaacaacaa 13099232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 12793615 - 12793554
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaac 265  Q
    ||||||| |||| ||| || ||| ||||||||||||||||| |||||||||||| |||||||    
T  12793615 aggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaac 12793554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 375
Target Start/End: Original strand, 37987465 - 37987685
Alignment:
Q  154 ctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 253  Q
    ||||||||| ||||||||||||||| | | | || | |||||| | ||| |||| ||||||||| |||||||  ||||||||| |||||||||| |||||    
T  37987465 ctccaaaccacctcgccaagaaacaagcatcgacttaaacacataacaagagga-gatgaaacctaacaacataacacgggcagcgacgccggtctgaag 37987563  T
Q  254 cgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtga 353  Q
    || | || |||| ||||||||||||| |||  ||   ||||| |||||||||| || | | ||| |||||||||||| ||| |||| |||| ||||| |     
T  37987564 cggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccgaagtaaacaacaaccaaaccaacaagcgacaagagc 37987663  T
Q  354 ccaccaacccgacccaaaaagg 375  Q
    |||||| | |||||||||||||    
T  37987664 ccaccatcacgacccaaaaagg 37987685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 34866640 - 34866691
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 255  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcg 34866691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 9519116 - 9519068
Alignment:
Q  207 aagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 255  Q
    |||| ||||||||||||||| ||||||||| |||||| |||||||||||    
T  9519116 aagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcg 9519068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 10551806 - 10551755
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcg 255  Q
    ||||||| |||||||||||||||  |||||||| |||||||| |||||||||    
T  10551806 aggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcg 10551755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 360
Target Start/End: Complemental strand, 45163461 - 45163256
Alignment:
Q  154 ctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 253  Q
    ||||||||| ||||||||||||||||| || ||||  || ||| || |||||||||||||||||||||||||| |||| | |||||||||| || ||||     
T  45163461 ctccaaaccacctcgccaagaaacaggcagtaacccaaatacagactaaaaggaagatgaaacccaacaacaaaacacagacaacgacgccagtctgaat 45163362  T
Q  254 cgaagacacaacttagatcgtaaacatgcattcgttagtgacgaggagaaggcgtctgacgccggagtaaacaacaatcaagccaaaaagctacaagtga 353  Q
     | | |||| || ||| ||||||||| |||| ||   ||||| | ||||||||||||| | ||  |||||||| ||| ||| ||||||||| ||||| |     
T  45163361 ggga-acactacctagttcgtaaacaggcatccgacggtgacaaagagaaggcgtctggcaccacagtaaacaccaaccaatccaaaaagcgacaagagc 45163263  T
Q  354 ccaccaa 360  Q
    |||||||    
T  45163262 ccaccaa 45163256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 1653499 - 1653571
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaa 276  Q
    ||||||| |||| |||||||||| ||||||||| |||||||||||||||||||| | |||||  |||||||||    
T  1653499 aggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaa 1653571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 2394726 - 2394825
Alignment:
Q  154 ctccaaaccccctcgccaagaaacaggaagcaacctgaacacaaaccaaaaggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaag 253  Q
    ||||||| | |||||||| |||||||| || ||||  || ||| ||||||||||||||||||||||| ||||| |||| | || |||||||||| |||||    
T  2394726 ctccaaagcacctcgccaggaaacaggcagtaacccaaatacagaccaaaaggaagatgaaacccaataacaaaacacagacagcgacgccggtctgaag 2394825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 17501816 - 17501889
Alignment:
Q  204 aggaagatgaaacccaacaacaagacacgggcaacgacgccggtttgaagcgaagacacaacttagatcgtaaa 277  Q
    ||||||| |||| | |||||||| |||||| ||| |||| | |||||||||| | ||||||| |||||||||||    
T  17501816 aggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaacctagatcgtaaa 17501889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 6105 - 5971
Alignment:
Q  85 ggttcagcaagcacaagagcaagacaatgaggttgaaagtctccaaggggagtag-gacaaagactacacctccaaaccccctcgccaagaaaca-ggaa 182  Q
    ||||||| | ||||||||||||| ||| |||||||||| |||||||||  || || |||||||||||| || | ||||| || | |||||||| | || |    
T  6105 ggttcaggaggcacaagagcaagtcaacgaggttgaaaatctccaaggaaagaagagacaaagactacgccacgaaaccaccacaccaagaaaaatggca 6006  T
Q  183 gcaacctgaacacaaaccaaaaggaagatgaaacc 217  Q
     |||||  |||||||||||||||||||||||||||    
T  6005 acaacccaaacacaaaccaaaaggaagatgaaacc 5971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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