View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21683_high_7 (Length: 415)
Name: NF21683_high_7
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21683_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 130 - 405
Target Start/End: Complemental strand, 22368617 - 22368342
Alignment:
| Q |
130 |
tttcctctttaaatttgaaattgaatatttgaaaccaacctgtttttctttctcttactgatctgtaacagcggattaaaattgccgaggtcattgaaaa |
229 |
Q |
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| T |
22368617 |
tttcctctttaaatttgaaattgaatatttgaaaccaacctgtttttctttctcttactgatctgtaacagcggattaaaattgccgaggtcattgaaaa |
22368518 |
T |
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| Q |
230 |
tgagtggttcaagaagggatataaacctcctgtgtttgaacaggccgatgttagtcttgatgatgtaaattctattttcaatggttttatggtaagtctt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22368517 |
tgagtggttcaagaagggatataaacctcctgtgtttgaacaggctgatgttagtcttgatgatgtaaattctattttcaatggttatatggtaagtctt |
22368418 |
T |
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| Q |
330 |
tcaatattttggttatcttgattaaattctgttcatctaagctttggattttagacttatctcgatgttctctgtg |
405 |
Q |
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| T |
22368417 |
tcaatattttggttatcttgattaaattctgttcatctaagctttggattttagacttatcccgatgttctctgtg |
22368342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22368701 - 22368625
Alignment:
| Q |
1 |
agtgcaaagaaactaatcaaaagaattctcgatcccagtcctatcacagtatgtgtaacttgttagttttgcttaat |
77 |
Q |
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| T |
22368701 |
agtgcaaagaaactaatcaaaagaattctcgatcccagtcctatcacagtatgtgtaacttgttagttttgcttaat |
22368625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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