View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21683_high_9 (Length: 397)
Name: NF21683_high_9
Description: NF21683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21683_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 331089 - 330753
Alignment:
| Q |
18 |
catcatcgccaccaatgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgctttgtct- |
116 |
Q |
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| T |
331089 |
catcatcgccaccaatgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgctttgtcta |
330990 |
T |
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| Q |
117 |
------gctttattcattttacatttctcaatcaatctcatgatttatttattatgaataggttatccaccatctgatgcaaaggaaggacatcctccac |
210 |
Q |
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| T |
330989 |
atgtccgcattattcattttacatttctcaatc----tcatgatttatttat---gaataggttatccaccatctgatgcaaaggaaggacatcctccac |
330897 |
T |
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| Q |
211 |
aaggatatccacctcaagggtatccaccgcaaggttatccaccgcaagggtatccaccacaaggatatccgccaccgggatatccaccaccaggttatcc |
310 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
330896 |
aagggtatccaccacaagggtatccaccgcaagggtatccaccgcaagg---------------atatccgccaccgggatatccaccaccaggttatcc |
330812 |
T |
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| Q |
311 |
accgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330811 |
accgcaacaaggatatcctccaccaccctacccagcacaagggtatcctccacaatatg |
330753 |
T |
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