View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_high_10 (Length: 349)
Name: NF21684_high_10
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 46039325 - 46039041
Alignment:
| Q |
2 |
acagagacaatacagtgatctagcagaagctaatgatgccccaatatagatgttttagtctatcaatgaggtgtcagtttagtggtaagaatttgatctt |
101 |
Q |
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| T |
46039325 |
acagagacaatacagtgatctagcagaagctaatgatgccccaatatagatgttgtagtctatcaatgaggtgtcagtttagtggtaagaatttgatctt |
46039226 |
T |
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| Q |
102 |
ttatcctcaagagatattcaaacctcctagggaacactagtaaaatagtcattaatgtcgctttaattaatgatagaatcttaattttannnnnnnncaa |
201 |
Q |
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| T |
46039225 |
ttatcctcaagagatattcaaacctcctagggaacactggtaaaatagtcattaatgtcgctttaattaacgatagaatctgaatttga-tttttttcaa |
46039127 |
T |
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| Q |
202 |
ttcttcttgagattagttatatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtcagcatttgcatgtgtctat |
288 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46039126 |
ttcttcttgagattaagt-tatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtcagcatttgcatgtgtctat |
46039041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 46039019 - 46038987
Alignment:
| Q |
288 |
tatagatgattgtatcttgatttcaatggatat |
320 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46039019 |
tatagatgattgtatcttgatttcaatggatat |
46038987 |
T |
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