View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_high_11 (Length: 348)
Name: NF21684_high_11
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 332
Target Start/End: Original strand, 15117715 - 15118048
Alignment:
| Q |
2 |
aacaacacataagtgataagatatatacatctaacatctataggttttatgtttaacatagcatgttg-tattcaagtcactttgtgtggttgcatttaa |
100 |
Q |
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| T |
15117715 |
aacaacacataaatgataagatatatacatctaacatctttaggttttatgtttaacataacatgtttatattcaagtcactttgtgtggttgcatttaa |
15117814 |
T |
|
| Q |
101 |
cctagtgtggatatctactcaatgttttaagcttcccttcgacctaacaattggtatcaaagtagattttgcctaatatgagactgag--tagattcatg |
198 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||||||||| |
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| T |
15117815 |
cctagtgtggatatctactgaatgttttaagcttcccttcgacctaacaattggtatcaaagtagattttacctaatatgggagtgagagtagattcatg |
15117914 |
T |
|
| Q |
199 |
ggtagtaaattcaactttgcgtggtccattagtcttacattggttagaaatgaactaaaagaagaaactataagagatgtgactcacgtatctaattgtt |
298 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||| |
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| T |
15117915 |
ggtagtaaattcaactttgaatggtccactagtcttacattggttaaaaatgaactaaaggaagaaactataagagatgtgacttgtgtacctaattgtt |
15118014 |
T |
|
| Q |
299 |
taaggtttttagtggagatgtgatgttctactct |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
15118015 |
taaggtttttagtggagatgtgatgttctactct |
15118048 |
T |
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