View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_high_16 (Length: 332)
Name: NF21684_high_16
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_high_16 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 36 - 332
Target Start/End: Complemental strand, 14086340 - 14086047
Alignment:
| Q |
36 |
acagtcagtgaataccctctcgggacttgtggcaagaaagacccagagaatcctacttgttcgaaaatttctcttacgggaaaggtgtgtgagaaaataa |
135 |
Q |
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| T |
14086340 |
acagtcagtgaataccctctcgggacttgtggcaagaaagacccagagaatcctacttgttcgaaaatttctcttacgggaaaggtgtgtgagaaaataa |
14086241 |
T |
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| Q |
136 |
attctattgaatatgattttgattataaaaaacgtttcctcaatatttctcctttattagttctatctacgttgtatctttttgttctaaattatgcttt |
235 |
Q |
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| T |
14086240 |
attctattgaatatgattatgattataaaaaacgtttcctcaatattt---cttcattagttctatctactttgtatctttttgttctaaattatgcttt |
14086144 |
T |
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| Q |
236 |
ttggcgatttcccgttcacatgttagttagttatgaatgttatgcaagtttaattttgatcctaatttctcagattgcacttaaatcccttgcttgt |
332 |
Q |
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| T |
14086143 |
ttggcgatttcccgttcacatgctagttagttatgaatgttatgcaagtttaattttgatcctaatttctcagattgcacttaaatcccttgcttgt |
14086047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 36 - 332
Target Start/End: Complemental strand, 14396358 - 14396065
Alignment:
| Q |
36 |
acagtcagtgaataccctctcgggacttgtggcaagaaagacccagagaatcctacttgttcgaaaatttctcttacgggaaaggtgtgtgagaaaataa |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14396358 |
acagtcagtgaataccctctcgggacttgtggcaagaaagacccagagaatcctacttgttcgaaaatttctcttacgggaaaggtgtgtgagaaaataa |
14396259 |
T |
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| Q |
136 |
attctattgaatatgattttgattataaaaaacgtttcctcaatatttctcctttattagttctatctacgttgtatctttttgttctaaattatgcttt |
235 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14396258 |
attctattgaatatgattatgattataaaaaacgtttcctcaatattt---cttcattagttctatctactttgtatctttttgttctaaattatgcttt |
14396162 |
T |
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| Q |
236 |
ttggcgatttcccgttcacatgttagttagttatgaatgttatgcaagtttaattttgatcctaatttctcagattgcacttaaatcccttgcttgt |
332 |
Q |
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| T |
14396161 |
ttggcgatttcccgttcacatgctagttagttatgaatgttatgcaagtttaattttgatcctaatttctcagattgcacttaaatcccttgcttgt |
14396065 |
T |
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