View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21684_high_1_N (Length: 587)

Name: NF21684_high_1_N
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21684_high_1_N
NF21684_high_1_N
[»] chr1 (2 HSPs)
chr1 (17-240)||(23247768-23247990)
chr1 (323-369)||(23246701-23246747)
[»] chr4 (6 HSPs)
chr4 (17-240)||(18747815-18748034)
chr4 (17-240)||(52367551-52367774)
chr4 (429-565)||(30231689-30231827)
chr4 (432-527)||(18747556-18747651)
chr4 (237-299)||(18747729-18747791)
chr4 (323-365)||(30231040-30231082)
[»] chr8 (3 HSPs)
chr8 (56-240)||(24252642-24252826)
chr8 (284-363)||(14330807-14330885)
chr8 (324-368)||(24251537-24251581)
[»] chr3 (3 HSPs)
chr3 (429-573)||(15258835-15258979)
chr3 (284-365)||(15259784-15259864)
chr3 (302-369)||(33590859-33590925)
[»] chr2 (2 HSPs)
chr2 (429-571)||(31142037-31142179)
chr2 (284-369)||(31140328-31140412)
[»] chr7 (6 HSPs)
chr7 (476-573)||(13938057-13938154)
chr7 (476-572)||(39287087-39287183)
chr7 (284-365)||(13937597-13937677)
chr7 (284-365)||(39286628-39286708)
chr7 (284-369)||(9987422-9987506)
chr7 (292-365)||(17218402-17218475)
[»] scaffold0094 (1 HSPs)
scaffold0094 (292-369)||(6814-6890)
[»] chr5 (3 HSPs)
chr5 (429-482)||(41145457-41145510)
chr5 (284-369)||(21724279-21724363)
chr5 (284-369)||(21804015-21804099)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 23247768 - 23247990
Alignment:
Q  17 atcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactagtaa 116  Q
    ||||||||||||||||||||||||||||         | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23247768 atcatcatctatggcacatctctggaagaaaaaaaatt-caaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactagtaa 23247866  T
Q  117 ttattttgaggaccaaatatttacctttacatctgtgaggtctacattgtactctccaacaaagcttaaaaactctttgaagttctcttcagttggatga 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23247867 ttattttgaggaccaaatatttacctttacatttgtgaggtctacattatgctctccaagaaagcttaaaaactctttgaagttctcttaagttggatga 23247966  T
Q  217 tagtgtccgctttatgcccaaata 240  Q
    |||| ||| ||||||| |||||||    
T  23247967 tagtatccactttatggccaaata 23247990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 23246701 - 23246747
Alignment:
Q  323 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  23246701 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacctga 23246747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 8e-81; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 18748034 - 18747815
Alignment:
Q  17 atcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactagtaa 116  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18748034 atcatcatctatggcacatctctggaagaaaaaaaa-tgcaaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactagtaa 18747936  T
Q  117 ttattttgaggaccaaatatttacctttacatctgtgaggtctacattgtactctccaacaaagcttaaaaactctttgaagttctcttcagttggatga 216  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||| |||||||| ||||    
T  18747935 ttattttaaggaccaaatatttacctttacatctgtgaggtctacattg-actctccaagaaagcttaaaaactc--tgaagttctgttcagttgaatga 18747839  T
Q  217 tagtgtccgctttatgcccaaata 240  Q
    |||||||| |||||||||||||||    
T  18747838 tagtgtccactttatgcccaaata 18747815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 52367551 - 52367774
Alignment:
Q  17 atcatcatctatggcacatctctggaagnnnnnnnnntgcaaaacaatcattagtaatcttaatttcattagtactttgcataggta-catttact---a 112  Q
    |||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||||||  ||| |||| ||||||||   |    
T  52367551 atcatcatctatggcacatctctggaa----aacaaatgcaaaacaatcatcagtaatcttaatttcattagtacttcacatgggtaacatttactgcta 52367646  T
Q  113 gtaattattttgaggaccaaatatttacctttacatctgtgaggtctacattgtactctccaacaaagcttaaaaactctttgaagttctcttcagttgg 212  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| |||||    
T  52367647 gtaattattttgaggatcaaatatttacctttacatttgtgaggtctacattgtgctctccaagaaagcttataaattctttgaagttctcttctgttgg 52367746  T
Q  213 atgatagtgtccgctttatgcccaaata 240  Q
    ||| |||||||| || |||| |||||||    
T  52367747 atggtagtgtccactgtatggccaaata 52367774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 429 - 565
Target Start/End: Original strand, 30231689 - 30231827
Alignment:
Q  429 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttt--tgt 526  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||  |||    
T  30231689 aacatatagtaaactagaactagttagctaagcatttggttaattaattaggagagtatgtgctcttgctggtagctttatgttattgctggttttctgt 30231788  T
Q  527 tttttggcatcagtctcggttggttgaggtactatgtgg 565  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  30231789 tttttggcatcagtctcggttggttgaggtactgtgtgg 30231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 432 - 527
Target Start/End: Complemental strand, 18747651 - 18747556
Alignment:
Q  432 atatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttttgtt 527  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18747651 atatagtaaactagaaccagttagctaagcatttggttaattaattaagagagtatgttctcttgctggtagctttatgttactgctggttttgtt 18747556  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 18747791 - 18747729
Alignment:
Q  237 aataattaataacaatttcatctatgatcactactaaaatacagtgatttcaagctattacta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18747791 aataattaataacaatttcatctatgatcactactaaaatacagtgatttcaaggtattacta 18747729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 30231040 - 30231082
Alignment:
Q  323 gtgttctcttcaacaaatcaaccatgttcccataaacttgtac 365  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||    
T  30231040 gtgttttcttcaacaaatcaagcatgttaccataaacttgtac 30231082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 24252642 - 24252826
Alignment:
Q  56 caaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactagtaattattttgaggaccaaatatttacctttacatctgtgag 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||     
T  24252642 caaaacaatcattagtaatcttaatttcattagtactttgcataggtacatttactagtaagtgttttgaggaccaaatatttacctttacatttgtgat 24252741  T
Q  156 gtctacattgtactctccaacaaagcttaaaaactctttgaagttctcttcagttggatgatagtgtccgctttatgcccaaata 240  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||    
T  24252742 gtctacattatgctctccaagaaagcttaaaaactctttgaagttctcttcaattggatgatagtatccactttatggccaaata 24252826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 284 - 363
Target Start/End: Original strand, 14330807 - 14330885
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgt 363  Q
    ||||||| |||||| || |||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  14330807 tttcaaggtattaccattcactctctatattataata-tgtgttcttgtcaacaaatcaaccatgttcccataaacttgt 14330885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 24251537 - 24251581
Alignment:
Q  324 tgttctcttcaacaaatcaaccatgttcccataaacttgtacctg 368  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  24251537 tgttttcttcaacaaatcaagcatgttaccataaacttgtacctg 24251581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 429 - 573
Target Start/End: Complemental strand, 15258979 - 15258835
Alignment:
Q  429 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttt 528  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  15258979 aacatatagtaaactagaaccagttagctaagcatttggttaattaattaggagagtatctgctcttgctggtagctttatgttactgctggttttgttt 15258880  T
Q  529 tttggcatcagtctcggttggttgaggtactatgtggtgtgctgc 573  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  15258879 tttggcatcagtctcggttggttgaggtactgtgtggtgtgctgc 15258835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 15259864 - 15259784
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 365  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15259864 tttcaaggtattactattcactctctctattataat-gtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 15259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 33590859 - 33590925
Alignment:
Q  302 cactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  33590859 cactctctctattacaata-tgtattctcttcaacaaatcaaccatgtttccataaacttgtacctga 33590925  T

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Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 429 - 571
Target Start/End: Original strand, 31142037 - 31142179
Alignment:
Q  429 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttt 528  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  31142037 aacatatagtaaactagaaccagtaagctaagcatttagttaattaattaggagagtatgtgctcttgctggtagctttatgttactgctggttttgttt 31142136  T
Q  529 tttggcatcagtctcggttggttgaggtactatgtggtgtgct 571  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  31142137 tttggcatcagtctcggttggttgaggtactgtgtggtgtgct 31142179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 31140328 - 31140412
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
    ||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  31140328 tttcaaggtattactacccactctctctattataatgg-gtgttctcttcaacaaatcaaccatgttcccataaatttgtacctga 31140412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 476 - 573
Target Start/End: Original strand, 13938057 - 13938154
Alignment:
Q  476 ttaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttttttggcatcagtctcggttggttgaggtactatgtggtgtgctgc 573  Q
    |||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  13938057 ttaggagagtatctgctcttgctggtagctttatgttactgctggtcttgttttttggcatcagtctcggttggttgaggtattgtgtggtgtgctgc 13938154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 476 - 572
Target Start/End: Original strand, 39287087 - 39287183
Alignment:
Q  476 ttaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttttttggcatcagtctcggttggttgaggtactatgtggtgtgctg 572  Q
    |||||||||||| | |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39287087 ttaggagagtatctgctcttgttggtagctttatgttactgctggtcttgttttttggcatcagtctcggttggttgaggtactgtgtggtgtgctg 39287183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 13937597 - 13937677
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 365  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13937597 tttcaaggtattactatccactctctctattataat-gtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 13937677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 39286628 - 39286708
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 365  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39286628 tttcaaggtattactattcactctctctattataat-gtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 39286708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 9987422 - 9987506
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
    ||||||| |||||| || ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||    
T  9987422 tttcaaggtattaccattcactctctctattataata-tatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctga 9987506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 17218475 - 17218402
Alignment:
Q  292 tattactatccactctctctatta-taatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 365  Q
    |||||| || |||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  17218475 tattaccattcactctctctattaataata-tgtgttatcttcaaaaaatcaaccatgttcccataaacttgtac 17218402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 6814 - 6890
Alignment:
Q  292 tattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
    |||||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  6814 tattaccattcactctctatattataata-tgtgttctcttcaataaatcaaccatgttcccataaacttgtacctga 6890  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 41145457 - 41145510
Alignment:
Q  429 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggag 482  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41145457 aacatatagtaaactagaaccagttagctaagcatttggttaattaattaggag 41145510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 21724279 - 21724363
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
    ||||||| |||||| || |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  21724279 tttcaaggtattaccattcactctctatattataata-tgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctga 21724363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 21804015 - 21804099
Alignment:
Q  284 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 369  Q
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T  21804015 tttcaaggtattaccattcactctctatattataata-tgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctga 21804099  T

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