View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_high_2 (Length: 528)
Name: NF21684_high_2
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Original strand, 7336552 - 7337027
Alignment:
| Q |
20 |
acatcatcaagagaattggaaaatgaagaagatgaagatgatggattcaaaactccaactcattttgataatagaatccaaataccaaagcaatgtccac |
119 |
Q |
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| T |
7336552 |
acatcatcaagagaattggaaaatgaagaagatgaagatgatggattcaaaactccaactcattttgataatagaatccaaataccaaagcaatgtccac |
7336651 |
T |
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| Q |
120 |
ttgcaccaagaaaaactaaaccacatatgaaaagaaggaaagcacaatgcaaacaactacttgatgtgtcaagagaagttgaattattgttccaaatcaa |
219 |
Q |
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| T |
7336652 |
ttgcaccaagaaaaactaaaccacatatgaaaagaaggaaagcacaatgcaaacaactacttgatgtgtcaagagaagttgaattattgttccaaatcaa |
7336751 |
T |
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| Q |
220 |
gaacaaaacattttcaagttcacaacaaagtaccaagaaagctcgaagaaaatagatcaatgcaaaagcttggttagtgtatcttaattatcaaggaatt |
319 |
Q |
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| T |
7336752 |
gaacaaaacattttcaagttcacaacaaagtaccaagaaagctcgaagaaaatagatcaatgcaaaagcttggttagtgtatcttaattatcaagg---- |
7336847 |
T |
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| Q |
320 |
aatgtaataggcaaattaatttgtgtaacttgatttgtattatatgaatggtgtatagaaatttgatttaaaatctagaatttatggtttgtatatcaaa |
419 |
Q |
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| T |
7336848 |
aatgtaataggcaaattaatttgtgtaacttgatttgtattatatgaatggtgtatagaaatttgatttaaaatctagaatttatggtttgtatatcaaa |
7336947 |
T |
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| Q |
420 |
tcatatggtaaattaagttgtttgtcaaattacaaattcggattctttcaaacgaatccaacataaactcaaactcatatc |
500 |
Q |
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| T |
7336948 |
tcatatggtaatttaagttgtttgtcaaattacaaattcggattctttcaaacg-atccaaaataaactgaaactcatatc |
7337027 |
T |
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