View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21684_high_21 (Length: 307)

Name: NF21684_high_21
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21684_high_21
NF21684_high_21
[»] chr8 (5 HSPs)
chr8 (1-244)||(38335998-38336241)
chr8 (116-182)||(30277254-30277317)
chr8 (156-207)||(11185256-11185304)
chr8 (149-182)||(25869275-25869308)
chr8 (149-182)||(28769348-28769381)
[»] chr6 (5 HSPs)
chr6 (149-182)||(17241261-17241294)
chr6 (155-213)||(5566158-5566213)
chr6 (139-180)||(7931800-7931841)
chr6 (154-182)||(2160946-2160974)
chr6 (154-182)||(31583712-31583740)
[»] chr5 (2 HSPs)
chr5 (149-182)||(29590638-29590671)
chr5 (149-182)||(33533548-33533581)
[»] chr2 (5 HSPs)
chr2 (151-182)||(32615951-32615982)
chr2 (131-173)||(29419871-29419913)
chr2 (147-181)||(41032965-41032999)
chr2 (149-182)||(3611365-3611398)
chr2 (149-182)||(16867767-16867800)
[»] chr1 (4 HSPs)
chr1 (149-183)||(11893601-11893635)
chr1 (149-182)||(11211146-11211179)
chr1 (149-182)||(33108631-33108664)
chr1 (149-182)||(35925718-35925751)
[»] chr4 (2 HSPs)
chr4 (149-182)||(7694019-7694052)
chr4 (149-181)||(35743310-35743342)
[»] chr3 (4 HSPs)
chr3 (149-208)||(9279312-9279368)
chr3 (154-213)||(37273167-37273223)
chr3 (149-181)||(26542565-26542597)
chr3 (154-182)||(29771871-29771899)
[»] scaffold0286 (1 HSPs)
scaffold0286 (154-182)||(16143-16171)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38336241 - 38335998
Alignment:
Q  1 tcaaccactcacaaagaatctcaactaatttctcccaaaaatgattctcataatgctgacatcaatgtcaataacggtgagttatgttgttattcgcatt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38336241 tcaaccactcacgaagaatctcaactaatttctcccaaaaatgattctcataatgctgacatcaatgtcaataacggtgagttatgttgttattcgcatt 38336142  T
Q  101 gtatttatcataagctatataagctgttggtttcatttgctatcccatagagtttatggaaataagttgaaaacaacttatgtactacatgttataagct 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38336141 gtatttatcataagctatataagctgttagtttcatttgctatcccatagagtttatggaaataagttgaaaacaacttatgtactacatgttataagct 38336042  T
Q  201 gtttccattagctattctgaaaattgattatatcaatgtatttg 244  Q
    |||||||| |||||||||||||| ||||||||||||||||||||    
T  38336041 gtttccatcagctattctgaaaagtgattatatcaatgtatttg 38335998  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 30277317 - 30277254
Alignment:
Q  116 tatataagctgttggtttcatttgctatcccatagagtttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||   |||||  ||||||| | |||||||||||||||||| |||||||||||||||    
T  30277317 tatataagctgtt---ttcataagctatcctagagagtttatggaaataagctgaaaacaacttatg 30277254  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 11185256 - 11185304
Alignment:
Q  156 atggaaataagttgaaaacaacttatgtactacatgttataagctgtttcca 207  Q
    |||||||||||||||||||||||||||    |||||||||||| ||||||||    
T  11185256 atggaaataagttgaaaacaacttatg---aacatgttataagatgtttcca 11185304  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 25869308 - 25869275
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||| |||||||||||||||    
T  25869308 agagtttatggaaataagctgaaaacaacttatg 25869275  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 28769381 - 28769348
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||| |||||||||||||||    
T  28769381 agagtttatggaaataagctgaaaacaacttatg 28769348  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 17241294 - 17241261
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    ||||||||||||||||||||||||||||||||||    
T  17241294 agagtttatggaaataagttgaaaacaacttatg 17241261  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 5566213 - 5566158
Alignment:
Q  155 tatggaaataagttgaaaacaacttatgtactacatgttataagctgtttccattagct 213  Q
    ||||||||||||||||||||||||||||    |||||| ||||||||||| ||||||||    
T  5566213 tatggaaataagttgaaaacaacttatg---gacatgtaataagctgttttcattagct 5566158  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 7931841 - 7931800
Alignment:
Q  139 gctatcccatagagtttatggaaataagttgaaaacaactta 180  Q
    ||||||| |||||| ||||||||||||| |||||||||||||    
T  7931841 gctatcctatagagcttatggaaataagctgaaaacaactta 7931800  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 2160974 - 2160946
Alignment:
Q  154 ttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||||||||||||||    
T  2160974 ttatggaaataagttgaaaacaacttatg 2160946  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 31583712 - 31583740
Alignment:
Q  154 ttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||||||||||||||    
T  31583712 ttatggaaataagttgaaaacaacttatg 31583740  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 29590671 - 29590638
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    ||||||||||||||||||||||||||||||||||    
T  29590671 agagtttatggaaataagttgaaaacaacttatg 29590638  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 33533581 - 33533548
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||| |||||||||||||||||||||||||||||    
T  33533581 agagcttatggaaataagttgaaaacaacttatg 33533548  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 32615951 - 32615982
Alignment:
Q  151 agtttatggaaataagttgaaaacaacttatg 182  Q
    ||||||||||||||||||||||||||||||||    
T  32615951 agtttatggaaataagttgaaaacaacttatg 32615982  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 29419871 - 29419913
Alignment:
Q  131 tttcatttgctatcccatagagtttatggaaataagttgaaaa 173  Q
    |||||| |||||||| | |||||||||||||||||||||||||    
T  29419871 tttcatatgctatcctagagagtttatggaaataagttgaaaa 29419913  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 41032999 - 41032965
Alignment:
Q  147 atagagtttatggaaataagttgaaaacaacttat 181  Q
    |||||||||||||||||||| ||||||||||||||    
T  41032999 atagagtttatggaaataagctgaaaacaacttat 41032965  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 3611365 - 3611398
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    ||||||| ||||||||||||||||||||||||||    
T  3611365 agagtttgtggaaataagttgaaaacaacttatg 3611398  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 16867767 - 16867800
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||| |||||||||||||||||||||||||||||    
T  16867767 agagcttatggaaataagttgaaaacaacttatg 16867800  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 11893635 - 11893601
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatgt 183  Q
    |||||||||||||||||| ||||||||||||||||    
T  11893635 agagtttatggaaataagctgaaaacaacttatgt 11893601  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 11211146 - 11211179
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||||| |||||||||||||    
T  11211146 agagtttatggaaataagttaaaaacaacttatg 11211179  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 33108664 - 33108631
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||| |||||||||||||||||||||||||||||    
T  33108664 agagcttatggaaataagttgaaaacaacttatg 33108631  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 35925718 - 35925751
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    ||||||||||||||||||||||||||| ||||||    
T  35925718 agagtttatggaaataagttgaaaacagcttatg 35925751  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 7694052 - 7694019
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||| |||||||||||||||    
T  7694052 agagtttatggaaataagctgaaaacaacttatg 7694019  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 35743310 - 35743342
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttat 181  Q
    ||||||||||||||||||||| |||||||||||    
T  35743310 agagtttatggaaataagttggaaacaacttat 35743342  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 9279368 - 9279312
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttatgtactacatgttataagctgtttccat 208  Q
    |||||||| ||||||||| |||||||| ||||| |||   ||||||||||||||||||||    
T  9279368 agagtttaaggaaataagctgaaaacagcttatatac---atgttataagctgtttccat 9279312  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 37273167 - 37273223
Alignment:
Q  154 ttatggaaataagttgaaaacaacttatgtactacatgttataagctgtttccattagct 213  Q
    |||||||||||||||||||||||||||||    |||||| ||||| ||||||||| ||||    
T  37273167 ttatggaaataagttgaaaacaacttatg---gacatgtcataagttgtttccataagct 37273223  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 26542565 - 26542597
Alignment:
Q  149 agagtttatggaaataagttgaaaacaacttat 181  Q
    |||||||||||||||||||||||||||| ||||    
T  26542565 agagtttatggaaataagttgaaaacaagttat 26542597  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 29771871 - 29771899
Alignment:
Q  154 ttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||||||||||||||    
T  29771871 ttatggaaataagttgaaaacaacttatg 29771899  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 16143 - 16171
Alignment:
Q  154 ttatggaaataagttgaaaacaacttatg 182  Q
    |||||||||||||||||||||||||||||    
T  16143 ttatggaaataagttgaaaacaacttatg 16171  T

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