View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_high_22 (Length: 302)
Name: NF21684_high_22
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7415486 - 7415782
Alignment:
| Q |
1 |
aatggataattccattgttgcaaatgtatttttatgtagcatccgatcattcaaagtgtgagtcttcagcagttgattagtctgcaaaaaatataagcac |
100 |
Q |
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| T |
7415486 |
aatggataattccattgttgcaaatgtatttttatgtagcatccgatcattcaaagtgtgagtcttcagcagttgattagtctgcaaaaaatataagcac |
7415585 |
T |
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| Q |
101 |
aaacttgatgttaagattgatctggtgtgtgtataaatcaaggcatatttttaaatatcattccattaaatataacaaaataagttaaaagtttatattt |
200 |
Q |
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| T |
7415586 |
aaacttgatgttaagattgatctggtgtgtgtataaatcaaggcatatttttaaatatcattccattaaatataacaaaataagttaaaagtttatattt |
7415685 |
T |
|
| Q |
201 |
tgagaacaacttttgaacatatacttgaatcaaaatttaaatttatgacgacgacttactatgaagttgtgaaaagatttcaactttaacaccaaac |
297 |
Q |
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| T |
7415686 |
tgagaacaacttttgaacatatacttgaatcgaaatttaaatttatgacgacgacttactatgaagttgtgaaaagatttcaactttaacatcaaac |
7415782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 291
Target Start/End: Original strand, 32219649 - 32219879
Alignment:
| Q |
64 |
cttcagcagttgattagtctgcaaaaaatataagcacaaacttgatgttaagattgatctggtgtgt------gtataaatcaaggcatatttttaaata |
157 |
Q |
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| T |
32219649 |
cttcagcagttgattagactgtaaaaaatataaacacaaagttgaagttaaacttgatctggtgtgtatgtgtgtataaatcatagcat--ttttaaata |
32219746 |
T |
|
| Q |
158 |
tcattccattaaatataacaaaa-taagttaaaagtttatattttgagaacaacttttgaacatatacttgaatcaaaatt-taaatttatgacgacgac |
255 |
Q |
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| T |
32219747 |
tcattcaaataaatagaaaaaaaataagttaaaagattggattttgagaacaagttttta---tatacatgaatcgaaagtataaatttatgatgataac |
32219843 |
T |
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| Q |
256 |
ttactatgaagttgtgaaaagatttcaactttaaca |
291 |
Q |
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| T |
32219844 |
taactataaagttgtgaaaagatttcaactttaaca |
32219879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 295
Target Start/End: Original strand, 32232193 - 32232358
Alignment:
| Q |
126 |
tgtgtgtataaatcaaggcatatttttaaatatcattccattaaatataacaaaataagttaaaagtttatattttgagaacaacttttgaacatatact |
225 |
Q |
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| T |
32232193 |
tgtgtgtataaatcatggcat--ttttaaatatcattcaattaaatagaaaaaaaaaagttattagattggattttgagaacaagttttta---tataca |
32232287 |
T |
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| Q |
226 |
tgaatcaaaatt-taaatttatgacgacgacttactatgaagttgtgaaaagatttcaactttaacaccaa |
295 |
Q |
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| T |
32232288 |
tgaatttaaagtataaatttatgatgatgacttactatgaagttgtgaaaagatttcaactttaacaccaa |
32232358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 296
Target Start/End: Original strand, 14166086 - 14166341
Alignment:
| Q |
45 |
gatcattcaaagtgtgagtcttcagcagttgattagtctgcaa-----aaaatataagcacaaacttgatgttaagattgatctggt--gtgtgtataaa |
137 |
Q |
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| T |
14166086 |
gatcattcaaagtgtgagtcttccgtagttgaatagtttgaaagaaaaaaaatacaaacataaacatgaagttaagattgatctgatccgtgtgtataca |
14166185 |
T |
|
| Q |
138 |
tcaaggcatatttttaaatatcattccattaaatataacaaaataagttaaaagtttatattttgagaacaacttttgaacatatacttgaatcaaaatt |
237 |
Q |
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| T |
14166186 |
tcatagaaa--ttttaaatatctttcaattaaattgaaaaaaataatttaaaattttgtattctgagaacaaattttta---tatacatgattcgaaagt |
14166280 |
T |
|
| Q |
238 |
-taaatttatgacgac-gacttactatgaagttgtgaaaagatttcaactttaacaccaaa |
296 |
Q |
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| T |
14166281 |
gtaaatttatgacaaccgagttactatgaagttgtgaaaagatttcaacgttaacaccaaa |
14166341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 8855290 - 8855349
Alignment:
| Q |
43 |
ccgatcattcaaagtgtgagtcttcagcagttgattagtctgcaaaaaatataagcacaa |
102 |
Q |
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| T |
8855290 |
ccgattatgcaatgtgagagtcttcagcagttggttcgtctgcaaaaaatataaacacaa |
8855349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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