View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21684_high_3 (Length: 489)

Name: NF21684_high_3
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21684_high_3
NF21684_high_3
[»] chr8 (2 HSPs)
chr8 (418-489)||(12933811-12933882)
chr8 (441-478)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (418-489)||(14177081-14177152)
chr4 (418-488)||(28608724-28608794)
chr4 (426-479)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (411-448)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (411-448)||(796698-796735)
chr6 (411-448)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (411-448)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 12933811 - 12933882
Alignment:
Q  418 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttg 489  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg 12933882  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  441 catggagatttggaagaggagatttatatggagcaacc 478  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 14177081 - 14177152
Alignment:
Q  418 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttg 489  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg 14177152  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 28608794 - 28608724
Alignment:
Q  418 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggattt 488  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt 28608724  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 479
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  426 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 479  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  411 gagcagttggatgtgaaaactgcatttcttcatggaga 448  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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