View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21684_high_6 (Length: 366)

Name: NF21684_high_6
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21684_high_6
NF21684_high_6
[»] chr6 (24 HSPs)
chr6 (180-337)||(9953036-9953193)
chr6 (184-343)||(23388989-23389149)
chr6 (184-343)||(23379650-23379810)
chr6 (180-335)||(5739034-5739190)
chr6 (214-289)||(13004434-13004509)
chr6 (228-335)||(34501462-34501569)
chr6 (181-337)||(2371414-2371570)
chr6 (180-261)||(28666095-28666176)
chr6 (180-271)||(10289186-10289277)
chr6 (180-289)||(31071494-31071603)
chr6 (195-250)||(20181288-20181343)
chr6 (195-250)||(22154648-22154703)
chr6 (226-287)||(6512442-6512503)
chr6 (226-289)||(28112641-28112704)
chr6 (180-217)||(12981151-12981188)
chr6 (230-278)||(12991556-12991604)
chr6 (180-219)||(9314765-9314804)
chr6 (180-219)||(21633551-21633590)
chr6 (180-219)||(22463515-22463554)
chr6 (180-219)||(28116940-28116979)
chr6 (182-219)||(9840320-9840357)
chr6 (180-220)||(2378435-2378475)
chr6 (297-329)||(13004611-13004643)
chr6 (180-220)||(15543215-15543255)
[»] chr3 (34 HSPs)
chr3 (180-343)||(35411676-35411840)
chr3 (180-343)||(6921890-6922053)
chr3 (180-343)||(23299390-23299553)
chr3 (180-343)||(16185493-16185656)
chr3 (180-337)||(538015-538172)
chr3 (180-343)||(52198305-52198468)
chr3 (180-337)||(10884018-10884175)
chr3 (180-343)||(18645578-18645741)
chr3 (180-271)||(53814971-53815062)
chr3 (180-305)||(10107489-10107614)
chr3 (180-334)||(29344618-29344773)
chr3 (180-290)||(3839790-3839903)
chr3 (180-271)||(16243166-16243257)
chr3 (181-271)||(9380012-9380102)
chr3 (180-270)||(54460367-54460457)
chr3 (180-270)||(34984668-34984758)
chr3 (180-289)||(19302255-19302364)
chr3 (180-267)||(10880776-10880863)
chr3 (180-271)||(41976321-41976412)
chr3 (188-271)||(54736759-54736842)
chr3 (180-261)||(20729395-20729477)
chr3 (183-272)||(43808881-43808970)
chr3 (202-278)||(31548573-31548649)
chr3 (180-284)||(17532565-17532669)
chr3 (201-282)||(19305445-19305526)
chr3 (202-343)||(22994429-22994570)
chr3 (264-308)||(55032789-55032833)
chr3 (292-343)||(9380143-9380194)
chr3 (180-216)||(31857055-31857091)
chr3 (180-220)||(50462415-50462455)
chr3 (180-219)||(9157508-9157547)
chr3 (180-218)||(2280741-2280779)
chr3 (180-218)||(42355298-42355336)
chr3 (180-220)||(43926124-43926164)
[»] chr7 (23 HSPs)
chr7 (180-343)||(8276012-8276175)
chr7 (180-343)||(26556510-26556673)
chr7 (180-343)||(10431386-10431549)
chr7 (180-335)||(4542074-4542229)
chr7 (180-335)||(2442122-2442277)
chr7 (180-271)||(45288047-45288138)
chr7 (180-271)||(45291383-45291474)
chr7 (180-290)||(20081530-20081640)
chr7 (180-278)||(17729973-17730071)
chr7 (180-271)||(9865551-9865642)
chr7 (180-271)||(9080376-9080467)
chr7 (180-271)||(10344616-10344707)
chr7 (180-271)||(4596833-4596924)
chr7 (180-271)||(4694723-4694814)
chr7 (211-333)||(9273882-9274003)
chr7 (180-289)||(16164889-16164998)
chr7 (180-289)||(48644616-48644725)
chr7 (180-289)||(6602621-6602730)
chr7 (180-249)||(48645852-48645921)
chr7 (180-220)||(37167030-37167070)
chr7 (180-218)||(11826392-11826430)
chr7 (231-261)||(18563366-18563396)
chr7 (180-209)||(13450736-13450765)
[»] chr5 (26 HSPs)
chr5 (180-343)||(43490793-43490956)
chr5 (180-343)||(42061486-42061649)
chr5 (180-343)||(22937892-22938055)
chr5 (180-335)||(32837083-32837238)
chr5 (180-343)||(37214766-37214929)
chr5 (180-343)||(28442018-28442181)
chr5 (180-343)||(31862872-31863035)
chr5 (180-308)||(14376706-14376834)
chr5 (180-272)||(28788309-28788401)
chr5 (180-289)||(14016927-14017036)
chr5 (180-271)||(21336650-21336742)
chr5 (180-271)||(21827949-21828041)
chr5 (180-289)||(17747617-17747726)
chr5 (182-271)||(39191333-39191422)
chr5 (180-271)||(40916795-40916889)
chr5 (180-271)||(18031710-18031801)
chr5 (185-334)||(4100278-4100431)
chr5 (180-244)||(7270241-7270305)
chr5 (202-261)||(2836702-2836761)
chr5 (180-261)||(30065562-30065643)
chr5 (214-271)||(2837584-2837641)
chr5 (180-229)||(25329456-25329505)
chr5 (226-289)||(7624303-7624366)
chr5 (180-220)||(41307405-41307445)
chr5 (292-343)||(21336558-21336609)
chr5 (231-271)||(33551385-33551425)
[»] chr4 (48 HSPs)
chr4 (180-343)||(15431164-15431327)
chr4 (180-343)||(15437778-15437941)
chr4 (180-343)||(18910604-18910767)
chr4 (180-337)||(33410805-33410962)
chr4 (180-332)||(3798644-3798796)
chr4 (180-330)||(5669628-5669778)
chr4 (180-343)||(5721808-5721971)
chr4 (180-343)||(19865480-19865643)
chr4 (180-335)||(5680469-5680624)
chr4 (180-343)||(9716951-9717114)
chr4 (180-298)||(14571026-14571144)
chr4 (181-343)||(19861124-19861286)
chr4 (180-329)||(12237354-12237503)
chr4 (180-330)||(49269735-49269885)
chr4 (230-343)||(40617649-40617762)
chr4 (180-308)||(37104113-37104241)
chr4 (20-115)||(18449136-18449231)
chr4 (188-271)||(21418987-21419070)
chr4 (226-343)||(53093767-53093884)
chr4 (180-271)||(3718336-3718427)
chr4 (180-271)||(12782106-12782197)
chr4 (188-271)||(40794200-40794283)
chr4 (180-289)||(29323979-29324088)
chr4 (180-289)||(44809795-44809904)
chr4 (180-268)||(44164001-44164090)
chr4 (180-261)||(52007350-52007431)
chr4 (180-271)||(15430674-15430766)
chr4 (180-271)||(15437288-15437380)
chr4 (180-271)||(27013229-27013321)
chr4 (180-261)||(53010377-53010458)
chr4 (180-271)||(27677874-27677966)
chr4 (180-271)||(24044966-24045057)
chr4 (185-286)||(34320738-34320839)
chr4 (180-288)||(56198029-56198137)
chr4 (180-271)||(19826701-19826793)
chr4 (180-271)||(27691933-27692025)
chr4 (180-261)||(19819950-19820032)
chr4 (180-289)||(56194722-56194831)
chr4 (180-261)||(35509201-35509280)
chr4 (180-289)||(47114776-47114885)
chr4 (180-285)||(15405793-15405898)
chr4 (180-289)||(33926121-33926230)
chr4 (226-289)||(15812973-15813036)
chr4 (230-271)||(37741471-37741512)
chr4 (180-220)||(38284375-38284415)
chr4 (180-208)||(17669447-17669475)
chr4 (180-220)||(34018659-34018699)
chr4 (180-220)||(48416408-48416448)
[»] chr8 (24 HSPs)
chr8 (180-343)||(45156755-45156918)
chr8 (180-343)||(14420864-14421027)
chr8 (180-343)||(5540832-5540995)
chr8 (180-343)||(10663011-10663174)
chr8 (180-337)||(18722152-18722310)
chr8 (180-329)||(33878089-33878238)
chr8 (184-343)||(25595521-25595681)
chr8 (215-343)||(25228049-25228175)
chr8 (184-343)||(25592336-25592496)
chr8 (180-343)||(43682634-43682798)
chr8 (180-289)||(18826725-18826834)
chr8 (180-334)||(12582218-12582372)
chr8 (20-115)||(15662654-15662749)
chr8 (180-289)||(22174782-22174891)
chr8 (180-271)||(30640505-30640598)
chr8 (180-289)||(14589707-14589816)
chr8 (180-271)||(19792926-19793019)
chr8 (180-256)||(23612569-23612645)
chr8 (180-250)||(5981150-5981220)
chr8 (226-290)||(38249248-38249312)
chr8 (180-219)||(20261647-20261686)
chr8 (180-219)||(21048277-21048316)
chr8 (180-220)||(16952998-16953038)
chr8 (295-343)||(30640624-30640672)
[»] chr1 (22 HSPs)
chr1 (180-343)||(29644145-29644308)
chr1 (180-343)||(2793299-2793462)
chr1 (180-343)||(49499405-49499568)
chr1 (180-335)||(1951190-1951345)
chr1 (180-278)||(41059135-41059234)
chr1 (180-267)||(2404722-2404809)
chr1 (180-289)||(45961598-45961707)
chr1 (181-289)||(27537104-27537212)
chr1 (226-343)||(34733100-34733217)
chr1 (180-261)||(21019287-21019367)
chr1 (180-271)||(42021721-42021812)
chr1 (180-271)||(21108302-21108393)
chr1 (180-289)||(31204014-31204123)
chr1 (226-289)||(6071791-6071854)
chr1 (180-219)||(47708778-47708817)
chr1 (180-217)||(22460406-22460443)
chr1 (180-220)||(45940621-45940661)
chr1 (180-219)||(3088696-3088735)
chr1 (180-209)||(22454290-22454319)
chr1 (180-217)||(49147113-49147150)
chr1 (180-220)||(28110283-28110323)
chr1 (180-220)||(37184743-37184783)
[»] chr2 (34 HSPs)
chr2 (180-343)||(25869835-25869998)
chr2 (180-343)||(25873203-25873366)
chr2 (180-343)||(26358672-26358835)
chr2 (180-343)||(36809272-36809435)
chr2 (180-343)||(38006123-38006286)
chr2 (180-343)||(25139877-25140040)
chr2 (180-334)||(16788389-16788542)
chr2 (180-343)||(25821754-25821922)
chr2 (180-334)||(30275537-30275691)
chr2 (180-308)||(15466170-15466298)
chr2 (180-271)||(10599951-10600042)
chr2 (180-289)||(38014636-38014745)
chr2 (180-271)||(3874482-3874573)
chr2 (180-289)||(31430529-31430638)
chr2 (180-255)||(5665830-5665905)
chr2 (180-261)||(43722904-43722985)
chr2 (180-268)||(13972725-13972813)
chr2 (180-261)||(5104953-5105032)
chr2 (182-271)||(13136764-13136853)
chr2 (180-308)||(29439597-29439723)
chr2 (183-289)||(36985626-36985732)
chr2 (180-261)||(6825974-6826055)
chr2 (180-289)||(45453051-45453160)
chr2 (215-289)||(31428340-31428414)
chr2 (180-289)||(45456300-45456409)
chr2 (180-220)||(9189532-9189572)
chr2 (180-220)||(37280556-37280596)
chr2 (180-220)||(43208769-43208809)
chr2 (180-218)||(31586785-31586823)
chr2 (180-208)||(1504290-1504318)
chr2 (180-208)||(1507492-1507520)
chr2 (180-220)||(8887842-8887882)
chr2 (180-220)||(25957323-25957363)
chr2 (180-220)||(40780658-40780698)
[»] scaffold0035 (1 HSPs)
scaffold0035 (180-343)||(61597-61760)
[»] scaffold0005 (2 HSPs)
scaffold0005 (180-298)||(246232-246350)
scaffold0005 (191-337)||(290974-291120)
[»] scaffold0015 (1 HSPs)
scaffold0015 (180-296)||(197242-197358)
[»] scaffold0757 (1 HSPs)
scaffold0757 (180-271)||(4563-4654)
[»] scaffold0080 (1 HSPs)
scaffold0080 (203-343)||(26277-26408)
[»] scaffold0270 (3 HSPs)
scaffold0270 (180-271)||(969-1060)
scaffold0270 (180-271)||(4329-4420)
scaffold0270 (180-271)||(11459-11550)
[»] scaffold0334 (1 HSPs)
scaffold0334 (180-304)||(18463-18588)
[»] scaffold0381 (1 HSPs)
scaffold0381 (180-271)||(6462-6554)
[»] scaffold0520 (1 HSPs)
scaffold0520 (180-270)||(4790-4880)
[»] scaffold0045 (1 HSPs)
scaffold0045 (180-286)||(88965-89071)
[»] scaffold1993 (1 HSPs)
scaffold1993 (180-271)||(1045-1136)
[»] scaffold1684 (1 HSPs)
scaffold1684 (180-285)||(369-474)
[»] scaffold0567 (1 HSPs)
scaffold0567 (180-219)||(7016-7055)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 9953036 - 9953193
Alignment:
Q  180 tgatgacagtcagtcatt-cactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9953036 tgatgacagtctgtcatttcac-atttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 9953134  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  9953135 ttttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagcaca 9953193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 23389149 - 23388989
Alignment:
Q  184 gacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagatttt 282  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||| ||||||  ||| ||||||||||||||||||||    
T  23389149 gacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacatgcaagcttaaacagcaaagaaaacaagaaaaatagaagatttt 23389051  T
Q  283 -gaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
     |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23389050 tgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatga 23388989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 23379810 - 23379650
Alignment:
Q  184 gacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagatttt 282  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||| || |||  ||| ||||||||||||||||||||    
T  23379810 gacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttt 23379712  T
Q  283 -gaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
     |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23379711 tgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatga 23379650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 335
Target Start/End: Complemental strand, 5739190 - 5739034
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt--atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaag 277  Q
    |||||||||||||||||||||||||||||| || |||||  ||||||| || |||||||||||||||  ||| ||||||  ||| |||||||||||||||    
T  5739190 tgatgacagtcagtcattcactatttttagagttttttttcatgatatgtt-gagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaag 5739092  T
Q  278 attttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagca 335  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  5739091 attttgaagaaagcaaaatcgtgtcacgattgttaaaaacatgtcacgatttggagca 5739034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 13004434 - 13004509
Alignment:
Q  214 tttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13004434 tttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaa 13004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 335
Target Start/End: Original strand, 34501462 - 34501569
Alignment:
Q  228 ttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgat 327  Q
    ||||||||||||||||| |||| ||||||  ||| ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  34501462 ttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaagattttgatgaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgat 34501561  T
Q  328 ttggagca 335  Q
    ||||||||    
T  34501562 ttggagca 34501569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 337
Target Start/End: Original strand, 2371414 - 2371570
Alignment:
Q  181 gatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||| ||| ||| |||||||||||||| ||| ||||| |||||||||| ||||||| ||||||| |||| ||||||  ||| |||||||||||||||||    
T  2371414 gatgatagttagttattcactatttttaatgttttttttatgatatttt-gagttcataagcaagtttaaacagcaaataaaacaagaaaaatagaagat 2371512  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    |||||||||||||||||||| |||||||||| ||||| || ||  ||||| |||||||    
T  2371513 tttgaagaaagcaaaatcgtatcacgattgttgaaaatgtatcgagatttagagcaca 2371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 28666176 - 28666095
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666176 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 28666095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 10289186 - 10289277
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  10289186 tgatgacagtaagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaaa 10289277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 31071494 - 31071603
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| |||| ||||| |||| |||||||| ||||||||||| || |||| ||| || |||||||| ||||    
T  31071494 tgatgacagtcagtcattctttatttttagtgtcattttcatgatgtttt-gagttcacgagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 31071592  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  31071593 ttttgaagaaa 31071603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 20181288 - 20181343
Alignment:
Q  195 attcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaag 250  Q
    |||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  20181288 attcgctatttttagagtccttttgtgatatttttgagttcacaagcaagcttaag 20181343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 22154703 - 22154648
Alignment:
Q  195 attcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaag 250  Q
    |||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  22154703 attcgctatttttagagtccttttgtgatatttttgagttcacaagcaagcttaag 22154648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 6512442 - 6512503
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaaga 287  Q
    |||||||||||||||||||||||| ||||||| ||| || ||||| | ||||||||||||||    
T  6512442 ttttgagttcacaagcaagcttaaacagcaaggaaaacatgaaaagttgaagattttgaaga 6512503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 28112704 - 28112641
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    ||||||||||||||||||||||||  |||||| ||| || ||||| | ||||||||||||||||    
T  28112704 ttttgagttcacaagcaagcttaaaaagcaaggaaagcatgaaaagttgaagattttgaagaaa 28112641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 12981188 - 12981151
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt 217  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12981188 tgatgacagtcagtcattcactatttttagagtctttt 12981151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 12991604 - 12991556
Alignment:
Q  230 gagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||| || |||||||| |||||||||| |||||    
T  12991604 gagttcacaagcaagcttaatcaacaagaaaagcaagaaaaattgaaga 12991556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 9314804 - 9314765
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  9314804 tgatgacagtcagtcatacactatttttagagtcttttta 9314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 21633551 - 21633590
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  21633551 tgatgacagtcagtcatacactatttttagagtcttttta 21633590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 22463515 - 22463554
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  22463515 tgatgacagtcagtcatacactatttttagagtcttttta 22463554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 28116940 - 28116979
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  28116940 tgatgacagtcagtcatacactatttttagagtcttttta 28116979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 9840357 - 9840320
Alignment:
Q  182 atgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  9840357 atgacagccagtcattcactatttttagagtcttttta 9840320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 2378435 - 2378475
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  2378435 tgatgacagtccgtcattcgctatttttagagtctttttat 2378475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 13004643 - 13004611
Alignment:
Q  297 cgtgtcacgattgtcgaaaacgtgtcacgattt 329  Q
    |||||||||||||| ||||||||||||||||||    
T  13004643 cgtgtcacgattgttgaaaacgtgtcacgattt 13004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 15543215 - 15543255
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  15543215 tgatgacagtccgtcattcgctatttttagagtctttttat 15543255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 35411676 - 35411840
Alignment:
Q  180 tgatgacagtcagtcatt-cactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||| |||||| ||  |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  35411676 tgatgacagtctgtcatttcaacatttttagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaagaaaacaaagaaaaatagaaga 35411775  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  35411776 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggaacacaggatga 35411840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 6921890 - 6922053
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||| ||||| ||||    
T  6921890 tgatgacagtcagtcattcactatttttagagcctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatataaga 6921988  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921989 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 6922053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 23299553 - 23299390
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||| ||||||||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaaga 23299455  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  23299454 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacaatttggagcacaagatga 23299390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 16185656 - 16185493
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||| |||||||   |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  16185656 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatataagat 16185557  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||| |||||    
T  16185556 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcacgttttagagcacaggatga 16185493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 538015 - 538172
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| |||| |||| ||||||  ||| ||||||||||||||||    
T  538015 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaaacaagtttaaacagcaaagaaaacaagaaaaatagaaga 538113  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  538114 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 538172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 52198305 - 52198468
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||||||||||||||    
T  52198305 tgatgacagtcagtcattcactatgtttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaga 52198403  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  52198404 ttttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 52198468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 10884018 - 10884175
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||| ||||||||||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaatgaaaacaaaaaaaatagaaga 10884116  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    ||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  10884117 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacctgtcacgatttgaagcaca 10884175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 18645741 - 18645578
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| ||||||||||||| ||||||||||| |||| |||||||||   ||||||||| ||||||||| ||||||  ||| ||||||||||||||||    
T  18645741 tgatgacaatcagtcattcactgtttttagtgtcattttcatgatatttca-agttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaaga 18645643  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  18645642 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 18645578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 53814971 - 53815062
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 53815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 10107614 - 10107489
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||||||||||||||    
T  10107614 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaaacaagaaaaatagaaga 10107516  T
Q  279 ttttgaagaaagcaaaatcgtgtcacg 305  Q
    |||||||||||||||||||||||||||    
T  10107515 ttttgaagaaagcaaaatcgtgtcacg 10107489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 29344773 - 29344618
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttt-ttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
T  29344773 tgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaattgaaga 29344674  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcg-aaaacgtgtcacgatttggagc 334  Q
       |||| ||||    |||||||||||||| | | |||||||| |||||||||||||    
T  29344673 aactgaaaaaag-gggatcgtgtcacgattattgaaaaacgtgacacgatttggagc 29344618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 3839790 - 3839903
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt---atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaa 276  Q
    |||||||||||||||||||||||||||||| || |||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaccgaa 3839889  T
Q  277 gattttgaagaaag 290  Q
    ||  ||||||||||    
T  3839890 gaaattgaagaaag 3839903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 16243166 - 16243257
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  16243166 tgatgacaatcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaa 16243257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 9380012 - 9380102
Alignment:
Q  181 gatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcaataagaaaagcaagaaaaa 9380102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 54460367 - 54460457
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaa 270  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||||    
T  54460367 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaatcttaagcaacaagaaaagaaagaaaa 54460457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 34984758 - 34984668
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaa 270  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaa 34984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 19302364 - 19302255
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||||| |||| ||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||| | |||||||||||||||    
T  19302364 tgatgatagtccgtcatttcatatttttagagtctttttatgatatttttgagttcacaagcaagcttaaacaacaaggaaagcgagaaaaatagaagat 19302265  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  19302264 tttgaagaaa 19302255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 10880776 - 10880863
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaaga 267  Q
    |||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  10880776 tgatgacagtcagttatttgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaaga 10880863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 41976321 - 41976412
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| || ||||||| ||||||||||||||||||||||| |||| ||||||||||| ||| |||||    
T  41976321 tgatgacagtcagtcattcgctatttttagagtgtttttataatatttttgagttcacaagcaagattaaacagcaagaaaagcaacaaaaa 41976412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 54736842 - 54736759
Alignment:
Q  188 gtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||    
T  54736842 gtcaatcattcactatttttagagtctttttatgatacttttgagttcacaagcaagcttaagcaacaagaaaagcaaaaaaaa 54736759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 20729477 - 20729395
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    ||||||||||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  20729477 tgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaagcttaagcagcaagaaaa 20729395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 43808881 - 43808970
Alignment:
Q  183 tgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaat 272  Q
    ||||||| ||| ||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  43808881 tgacagttagttattcgttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaaaaaaaat 43808970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 31548573 - 31548649
Alignment:
Q  202 atttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||    
T  31548573 atttttagagtctttttatgatatttttgagttcacaaccaagcttaagcagtaagaaaagcaagaaaaattgaaga 31548649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 17532669 - 17532565
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||| ||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||||||| ||||||    
T  17532669 tgattacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaaacaagaaaaaaagaaga 17532571  T
Q  279 ttttga 284  Q
    ||||||    
T  17532570 ttttga 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 19305526 - 19305445
Alignment:
Q  201 tatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagatttt 282  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||| ||||    
T  19305526 tatttttagagtctttttataatatttttgagttcacaagcaagcttaaacagcaaggaaagcgagaaaaatagaagttttt 19305445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 343
Target Start/End: Complemental strand, 22994570 - 22994429
Alignment:
Q  202 atttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgt 301  Q
    |||||||||||  | |||||||||||| |||| ||||||||||||||| ||||||| ||| |||||||||  ||||||| ||  |||||  |||| |||     
T  22994570 atttttagtgtaatattatgatatttt-gagtccacaagcaagcttaaacagcaaggaaagcaagaaaaactgaagattgtggtgaaagtgaaatagtga 22994472  T
Q  302 cacgattgtcg-aaaacgtgtcacgatttggagcacatgatga 343  Q
    |||| |||| | |||||||||||||||||||||||||| ||||    
T  22994471 cacggttgttgaaaaacgtgtcacgatttggagcacataatga 22994429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 55032833 - 55032789
Alignment:
Q  264 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55032833 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 55032789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 9380143 - 9380194
Alignment:
Q  292 aaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||| |||||    
T  9380143 aaaatcgtgtcacggttgttgaaaacgtgtcacgatttagagcacaggatga 9380194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 31857055 - 31857091
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttt 216  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31857055 tgatgacagtcagtcattcactatttttagagtcttt 31857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 50462455 - 50462415
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  50462455 tgatgacagtccgtcattcactatttttagagtctttttat 50462415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 9157508 - 9157547
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  9157508 tgatgacagtcagtcatgcactatttttagagtcttttta 9157547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 2280779 - 2280741
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt 218  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  2280779 tgatgacagtcagtcatgcactatttttagagtcttttt 2280741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 42355336 - 42355298
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt 218  Q
    |||||||||||||||||||||||||||||| || |||||    
T  42355336 tgatgacagtcagtcattcactatttttagagttttttt 42355298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 43926124 - 43926164
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  43926124 tgatgacagtccgtcattcgctatttttagagtctttttat 43926164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 8276012 - 8276175
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||| |||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  8276012 tgatgacagtctgtcattccatatttttagagtctttttatgatatttttgagttcacaagcaagctcaagcagcaagaaaagcaagaaaaatagaagat 8276111  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  8276112 tttgaagaaaacaaaatcgtgtcatgattgttgaaaacgtatcacgatttggagcacatgatga 8276175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 26556510 - 26556673
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||||||||||||||    
T  26556510 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaga 26556608  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  26556609 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 26556673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 10431386 - 10431549
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||||||||| ||||    
T  10431386 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataaga 10431484  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  10431485 ttttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttagagcacaggatga 10431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 4542074 - 4542229
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||||||||||||||    
T  4542074 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaaga 4542172  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagca 335  Q
    |||||| ||||||||| | ||||||||||||| ||||| |||||| |||||||||||    
T  4542173 ttttgaggaaagcaaatttgtgtcacgattgttgaaaatgtgtcatgatttggagca 4542229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 180 - 335
Target Start/End: Complemental strand, 2442277 - 2442122
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||||||||||||||    
T  2442277 tgatgacagtcagtcattcactattttaagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaaga 2442179  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagca 335  Q
    || ||| ||||||||| ||||||||||||||| |||||||| |||||||||| ||||    
T  2442178 ttctgaggaaagcaaattcgtgtcacgattgttgaaaacgtatcacgatttgaagca 2442122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 45288138 - 45288047
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 45288047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 45291474 - 45291383
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45291474 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 45291383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 20081640 - 20081530
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||     
T  20081640 tgatgacagtcagtcattcactatttttagagtgtttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatcaaagaa 20081541  T
Q  280 tttgaagaaag 290  Q
     ||||||||||    
T  20081540 attgaagaaag 20081530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 17729973 - 17730071
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  17729973 tgatgacagtcagtctttcactatttttagagtccttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatcgaaga 17730071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 9865642 - 9865551
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9865642 tgatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaa 9865551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 9080376 - 9080467
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||| ||||||||  ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9080376 tgatgacagttagtcattcgttatttttagagtctttttatgtaatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 9080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 10344616 - 10344707
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||| |||||| |||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  10344616 tgatgactgtcagtaattcgctatttttagagtcttcttatgaaatttttgagttcacaagcaagcttaagcagcaagaaaagcaaaaaaaa 10344707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 4596924 - 4596833
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||||||||| ||||||| ||| ||||||| |||||||| |||||||||    
T  4596924 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagctcacaagaaagattaagcaacaagaaaagcaagaaaaa 4596833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 4694723 - 4694814
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||| |||||||||||   ||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  4694723 tgatgaaagtcagtcatttgttatttttagagtctttctatgatatttttgagttcacaagcaagattaagcagcaagaaaagtaagaaaaa 4694814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 333
Target Start/End: Complemental strand, 9274003 - 9273882
Alignment:
Q  211 gtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgt 310  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||| | |||||   |||||||||   |||| ||||||||||      
T  9274003 gtctttttatgatattttggagttcacaagcaagcttaagcaccaagaaaagaaagaaaagttgaagaaactgaagaaag-ggaatcatgtcacgattac 9273905  T
Q  311 cgaaaacgtgtcacgatttggag 333  Q
     ||||||||||||||||||||||    
T  9273904 tgaaaacgtgtcacgatttggag 9273882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 16164889 - 16164998
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||  |||| ||||| |||| |||||||||||||||||||| || |||| ||| || |||||||| ||||    
T  16164889 tgatgacagtcagtcattcgttatttttagtgtaattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 16164987  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  16164988 ttttgaagaaa 16164998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 48644616 - 48644725
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| |||| || || |||| |||||||||||||||||||| || |||| ||| || |||||||| ||||    
T  48644616 tgatgacagtcagtcattctttatttttagtgtcattttcataatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 48644714  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  48644715 ttttgaagaaa 48644725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 6602621 - 6602730
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| | || || || ||||  ||||||||||||||||||| || |||| |||  | |||||||| ||||    
T  6602621 tgatgacagtcagtcattcgttatttttagtgtcatgttcataatgtttta-agttcacaagcaagcttaaacaacaaggaaagtatgaaaaatacaaga 6602719  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  6602720 ttttgaagaaa 6602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 48645921 - 48645852
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtc-tttttatgatatttttgagttcacaagcaagcttaa 249  Q
    |||||||||||||||||||  ||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  48645921 tgatgacagtcagtcattctttatttttagtgtcattttcatgat-gttttgagttcacaagcaagcttaa 48645852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 37167070 - 37167030
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  37167070 tgatgacagtcagtcattcgctatttttagagtctttttat 37167030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 11826430 - 11826392
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt 218  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  11826430 tgatgacagtcagtcatgcactatttttagagtcttttt 11826392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 261
Target Start/End: Complemental strand, 18563396 - 18563366
Alignment:
Q  231 agttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||||||||||||||||||||||||||||    
T  18563396 agttcacaagcaagcttaagcagcaagaaaa 18563366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 13450765 - 13450736
Alignment:
Q  180 tgatgacagtcagtcattcactatttttag 209  Q
    ||||||||||||||||||||||||||||||    
T  13450765 tgatgacagtcagtcattcactatttttag 13450736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 43490793 - 43490956
Alignment:
Q  180 tgatgacagtcagtcatt-cactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  43490793 tgatgacagtctgtcatttcac-atttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatagaaga 43490891  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  43490892 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgattaggagcacaggatga 43490956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 42061486 - 42061649
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||||||||    
T  42061486 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaaga 42061584  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  42061585 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacatgatga 42061649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 22938055 - 22937892
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||| |||||||    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22938055 tgatgacagtctgtcattccacgtttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagat 22937956  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||| |||||    
T  22937955 tttgaagaaagcaaaatcgtgccacggttgttgaaaacgtatcacgatttggagcacaagatga 22937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 32837083 - 32837238
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||  |||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  32837083 tgatgacagtatgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagaaagaaaaatagaagat 32837182  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagca 335  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32837183 tttgaagaaagcaaaatcgtgtcatgattgttgaaaacgtgtcacgatttggagca 32837238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 37214766 - 37214929
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||| |||||| |||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37214766 tgataacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagat 37214865  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||| |||||    
T  37214866 tttgaagaaagcaaaatcgtatcacaattgttgaaaacatgtcacgatttggagcacaggatga 37214929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 28442181 - 28442018
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||||||||| ||||    
T  28442181 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataaga 28442083  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||    
T  28442082 ttttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttagagcacaggatga 28442018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 31862872 - 31863035
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| |||| || ||||||| |||||||||||||||||||| || |||  ||| |||||||||||||| |    
T  31862872 tgatgacagtcagtcattccttatttttagtgtcattttcataatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaaa 31862970  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31862971 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 31863035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 14376834 - 14376706
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||||||||||||||    
T  14376834 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaatcaagaaaaatagaaga 14376736  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgatt 308  Q
    |||||| ||||||||| |||||||||||||    
T  14376735 ttttgaggaaagcaaattcgtgtcacgatt 14376706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 28788401 - 28788309
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaat 272  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  28788401 tgatgacagtcagtcatttgctatttttagagtctttttatgatattttttagttcacaagcaagcttaagcagcaagaaaaacaagaaaaat 28788309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 14017036 - 14016927
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| |||||    
T  14017036 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 14016937  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  14016936 tttgaagaaa 14016927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 21336742 - 21336650
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  21336742 tgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 21336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 21828041 - 21827949
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  21828041 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaa 21827949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 17747617 - 17747726
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| ||||||||||| ||| |||||||| || |||| ||| || |||||||| |||||    
T  17747617 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcataagaaagcttaaacaacaaggaaagcatgaaaaatacaagat 17747716  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  17747717 tttgaagaaa 17747726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 39191333 - 39191422
Alignment:
Q  182 atgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||| |||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  39191333 atgacagtcaatcatttgttatttttagagtctttttatgatacttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 39191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 40916889 - 40916795
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt---atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||  |||||||||| ||||||||   || ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  40916889 tgatgacagtcagtcatttgctatttttagagtcttttttttatcatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 40916795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 18031710 - 18031801
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||| |||| |||||||  ||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||    
T  18031710 tgatgatagtccgtcattccatatttttagagtctttttatgatattttcgagttcaaaagcaagtttaagcagcaagaaaagcaagaaaaa 18031801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 334
Target Start/End: Complemental strand, 4100431 - 4100278
Alignment:
Q  185 acagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttga 284  Q
    ||||||||| |||| ||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||  |||||   |||    
T  4100431 acagtcagttattcgctatttt-agagtctttttatgatatttttgagttcacaggcaagattaagcagcaagaaaagcaaggaaaactgaagaaactga 4100333  T
Q  285 agaaagcaaa----atcgtgtcacgatt-gtcgaaaacgtgtcacgatttggagc 334  Q
    |||||  |||    ||||||||||||||  || |||||||| |||||||||||||    
T  4100332 agaaaaaaaaagggatcgtgtcacgattactcaaaaacgtgacacgatttggagc 4100278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 7270241 - 7270305
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaag 244  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  7270241 tgatgacagtctgtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaag 7270305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 2836702 - 2836761
Alignment:
Q  202 atttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2836702 atttttagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaagaaaa 2836761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 30065562 - 30065643
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||||| ||| ||||||  ||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  30065562 tgatgacaatcattcattcgttatttttagagtctttttatgatatttttgaattcacaagcaagattaagcaacaagaaaa 30065643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 2837641 - 2837584
Alignment:
Q  214 tttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  2837641 tttttatgatattttggagttcacaagcaagcttaagcagcaataaaagcaagaaaaa 2837584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 25329456 - 25329505
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatattttt 229  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  25329456 tgatgacagtcagtcattcgctatttttagagtttttttatgatattttt 25329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 7624303 - 7624366
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    ||||||||||||| |||||||||| || |||| ||| || |||||||| |||||||||||||||    
T  7624303 ttttgagttcacaggcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 7624366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 41307445 - 41307405
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  41307445 tgatgacagtcagtcattcgctatttttagagtctttttat 41307405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 21336609 - 21336558
Alignment:
Q  292 aaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||| |||| |||||| ||||||||||| ||||||| |||||    
T  21336609 aaaatcgtgtcacggttgttgaaaacatgtcacgatttagagcacaggatga 21336558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 33551385 - 33551425
Alignment:
Q  231 agttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||| ||| |||||||||||||||| |||||||||    
T  33551385 agttcacaagtaagtttaagcagcaagaaaagcaagaaaaa 33551425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 15431164 - 15431327
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||| ||||||||||    
T  15431164 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaaga 15431262  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15431263 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatga 15431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 15437778 - 15437941
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||| ||||||||||    
T  15437778 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaaga 15437876  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15437877 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatga 15437941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 18910604 - 18910767
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| ||||| || |||  ||| ||||||||||||||||    
T  18910604 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaaacttaaacaacaaagaaagcaagaaaaatagaaga 18910702  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  18910703 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatga 18910767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 180 - 337
Target Start/End: Complemental strand, 33410962 - 33410805
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||||||||||||||    
T  33410962 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 33410864  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||    
T  33410863 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgttacgatttgaagcaca 33410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 3798796 - 3798644
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| ||||||  ||| ||||||||||||||||    
T  3798796 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaagcaagaaaaatagaaga 3798698  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttgga 332  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  3798697 ttttgaagaaagcaaaatcttgtcacgattgttgaaaatgtgtcacgatttgga 3798644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 5669628 - 5669778
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||||||||||||||    
T  5669628 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 5669726  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttg 330  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  5669727 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaatttg 5669778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 5721971 - 5721808
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| ||||||||||||| ||||||||||| |||| |||||||||   ||||||||| ||||||||| ||||||  ||| ||||||||||||||||    
T  5721971 tgatgacaatcagtcattcactgtttttagtgtcattttcatgatatttca-agttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaaga 5721873  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  5721872 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 5721808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 19865643 - 19865480
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||||||||||||||    
T  19865643 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaga 19865545  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||| |||||||||||||||||| | ||||| || ||||||||||||||||| |||||    
T  19865544 ttttgaagaaaacaaaatcgtgtcacgattattgaaaatgtatcacgatttggagcacaggatga 19865480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 5680469 - 5680624
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||| | |||||||   |||||||| |||||||||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||    
T  5680469 tgatgacagactgtcattccacatttttagagtctttttatgatatttttgagttcataagcaagcttaaacaacaagaaaagcaagaaaaatagaagat 5680568  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagca 335  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||| |||| |||||    
T  5680569 tttgaaaaaagcaaaatcatgtcacgattgttgaaaacgtgtcacaatttagagca 5680624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 9716951 - 9717114
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||||||||||||||    
T  9716951 tgatgacagtcggtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 9717049  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||| |||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||| |||||    
T  9717050 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacaatttagagcacaggatga 9717114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 14571026 - 14571144
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||| ||| |||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14571026 tgatgacggtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagat 14571125  T
Q  280 tttgaagaaagcaaaatcg 298  Q
    |||||||||||||||||||    
T  14571126 tttgaagaaagcaaaatcg 14571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 343
Target Start/End: Complemental strand, 19861286 - 19861124
Alignment:
Q  181 gatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||| ||| |||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||| |||||    
T  19861286 gatggcagacagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacagcaaagaaagcaagaaaaatataagat 19861188  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||  |||||| ||||||||||||| |||||||| ||||||||||||||||| |||||    
T  19861187 tttgaagaacacaaaattgtgtcacgattgttgaaaacgtatcacgatttggagcacaggatga 19861124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 12237354 - 12237503
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||| ||||| ||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||| ||||||||||    
T  12237354 tgatgatagtcattcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagagaaatagaaga 12237452  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgattt 329  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  12237453 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaatgtgtcacaattt 12237503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 49269735 - 49269885
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||    |||||||| || |||||||||||||||||||||  ||| ||||||||| | ||||  ||| |||||||||||||||||    
T  49269735 tgatgacagtcagtcattttacatttttagagtttttttatgatatttttgagttagcaaacaagcttaaacggcaaagaaagcaagaaaaatagaagat 49269834  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttg 330  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  49269835 tttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacgatttg 49269885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 40617762 - 40617649
Alignment:
Q  230 gagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgattt 329  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  40617762 gagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaggcaaaatcgtgccacgattgttgaaaacgtgtcacgattt 40617663  T
Q  330 ggagcacatgatga 343  Q
     || |||| |||||    
T  40617662 agaacacaagatga 40617649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 37104241 - 37104113
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| ||||||||||||| | |||||| || |||| |||||||||| |||||||||||||||||||| ||||||  ||| ||||||||||||||||    
T  37104241 tgatgacactcagtcattcactgtgtttagtatcattttcatgatatttt-gagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaaga 37104143  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgatt 308  Q
    ||||||||||||||||||||||||||||||    
T  37104142 ttttgaagaaagcaaaatcgtgtcacgatt 37104113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 18449136 - 18449231
Alignment:
Q  20 acatcatcatcaacaaattatcacatcattcttagaactacaacatcatctcaatagcactaacatcattaagtaaagatatccaagcacacgact 115  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  18449136 acatcatcatcaacaaatcatcacatcattcttacaactacaacatcatctcaagtgcactaacatcatcaagtaaagatatccaagcacacgact 18449231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 21418987 - 21419070
Alignment:
Q  188 gtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21418987 gtcagtcattcgctatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 21419070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 226 - 343
Target Start/End: Original strand, 53093767 - 53093884
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacg 325  Q
    |||||||||||||||||||||||| ||||||| ||| || ||||| | ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  53093767 ttttgagttcacaagcaagcttaaacagcaaggaaagcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaacgtgtcacg 53093866  T
Q  326 atttggagcacatgatga 343  Q
    | |||||||||| |||||    
T  53093867 aattggagcacaggatga 53093884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 3718336 - 3718427
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3718336 tgatgacagtcactcattcactatttttagagtatttttatgatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 3718427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 12782106 - 12782197
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  12782106 tgatgacagtcagtcattcgctatttttagagtcattttatgatatttttgagtttacaagcaagcttaagcagcaagaaaagcaagaaaaa 12782197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 40794200 - 40794283
Alignment:
Q  188 gtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40794200 gtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 40794283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 29323979 - 29324088
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| |||||    
T  29323979 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 29324078  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  29324079 tttgaagaaa 29324088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 44809904 - 44809795
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| |||||    
T  44809904 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 44809805  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  44809804 tttgaagaaa 44809795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 44164001 - 44164090
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt-tatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaa 268  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  44164001 tgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaa 44164090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 52007431 - 52007350
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  52007431 tgatgacagtcagtcattcgctatttttagagtctttttatgatattgttgagttcaaaagcaagcttaagcagcaagaaaa 52007350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 15430766 - 15430674
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 15430674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 15437380 - 15437288
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 15437288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 27013229 - 27013321
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt-tatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaagcaagaaaaa 27013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 53010458 - 53010377
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  53010458 tgatgatagtcagtcattcattatttttagagtctttttatgatatttttgagttcacaagtaagattaagcagcaagaaaa 53010377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 27677966 - 27677874
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||| |||||    
T  27677966 tgatgacagtcagttattcactatttttagagtcttttttatgatatttttgagttcacaatcaagattaagcagcaagaaaagcaaaaaaaa 27677874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 24045057 - 24044966
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||    
T  24045057 tgatgacagtcagtcattcgttatttttagagtctttttttgatatttttgagttcacaaacaagattaagcagcaagaaaagcaaggaaaa 24044966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 34320839 - 34320738
Alignment:
Q  185 acagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttga 284  Q
    |||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| ||  ||| ||| || |||||||| ||||||||||    
T  34320839 acagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaaacaataaggaaagcatgaaaaatacaagattttga 34320740  T
Q  285 ag 286  Q
    ||    
T  34320739 ag 34320738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 56198029 - 56198137
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||| ||| || |||||||||||||    
T  56198029 tgatgacagtcagtcattcgttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaaga 56198127  T
Q  279 ttttgaagaa 288  Q
    ||||||||||    
T  56198128 ttttgaagaa 56198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 19826701 - 19826793
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgata-tttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||| ||| ||||||| |||||||| |||||||||    
T  19826701 tgatgacagtcagtcattcgctatttttagagtctttttatgaaattttttgagttcacaagtaagattaagcaacaagaaaagcaagaaaaa 19826793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 27692025 - 27691933
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||| | ||||||||||||||||||| |||||||| | ||||||||||| |||||||||||| |||||||||||||||| |||||||||    
T  27692025 tgatgacaattagtcattcactatttttagagtcttttttacgatatttttgaattcacaagcaagattaagcagcaagaaaagcaagaaaaa 27691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 19819950 - 19820032
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgata-tttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    ||||||||||||||||||| |||||||||  |||||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  19819950 tgatgacagtcagtcattcgctatttttaaagtctttttatgatattttttgagttcacaagcaagattaagtagcaagaaaa 19820032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 56194722 - 56194831
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||| ||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||| ||| || |||||||||||||    
T  56194722 tgatgacagtcaatcattcgttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaaga 56194820  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  56194821 ttttgaagaaa 56194831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 35509201 - 35509280
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||| ||||||||||||||  ||||||||||  |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  35509201 tgataacagtcagtcattcgttatttttagt--ctttatatgatatttttgagttcacaagcaagattaagcaacaagaaaa 35509280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 47114776 - 47114885
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| |||| || || |||| |||||||||||||||||||| ||  ||| ||| || |||||||| ||||    
T  47114776 tgatgacagtcagtcattctttatttttagtgtcattttcattatgtttt-gagttcacaagcaagcttaaacaataaggaaaacatgaaaaatacaaga 47114874  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  47114875 ttttgaagaaa 47114885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 15405898 - 15405793
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||| ||||||||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||| ||  || |||||||| ||||    
T  15405898 tgatgaaagtcagtcattctttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaacgcatgaaaaatacaaga 15405800  T
Q  279 ttttgaa 285  Q
    |||||||    
T  15405799 ttttgaa 15405793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 33926121 - 33926230
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtc-tttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||||||   || |||||||||| |||  |||||  | |||||||||||||||||||||| || |||| ||| || |||||||| ||||    
T  33926121 tgatgacagtcagtcatttgttacttttagtgtcatttgcatgat-gtcttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 33926219  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  33926220 ttttgaagaaa 33926230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 15813036 - 15812973
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    ||||||||||||||||||| |||| || |||| ||| || |||||||| |||||||||||||||    
T  15813036 ttttgagttcacaagcaagtttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 15812973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 37741512 - 37741471
Alignment:
Q  230 gagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  37741512 gagttcacaagcaagcttaaacagcaagaaaaacaagaaaaa 37741471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 38284415 - 38284375
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  38284415 tgatgacagtcagtcattcgctatttttagagtctttttat 38284375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 17669447 - 17669475
Alignment:
Q  180 tgatgacagtcagtcattcactattttta 208  Q
    |||||||||||||||||||||||||||||    
T  17669447 tgatgacagtcagtcattcactattttta 17669475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 34018699 - 34018659
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  34018699 tgatgacagtccgtcattcgctatttttagagtctttttat 34018659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 48416448 - 48416408
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  48416448 tgatgacagtccgtcattcgctatttttagagtctttttat 48416408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 45156918 - 45156755
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||   ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  45156918 tgatgacagtttatcattctatatttttagagtctttttatgatatttttgagttcacaagcaagctttagcagcaagaaaagcaagaaaaatagaagat 45156819  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  45156818 tttgaagaaagcacaatcgtgtcacgattgttgaaaatgtgtcacgatttggagcacaggatga 45156755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 14420864 - 14421027
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||||||||||  ||||||   |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  14420864 tgatgacagtctctcattccacatttttagagtctttttatgatattttttagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataagat 14420963  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||    
T  14420964 tttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacgatttggaacacaggatga 14421027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 5540995 - 5540832
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||  |||||||   |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||    
T  5540995 tgatgacagtttgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagacaagtaagaaaaatagaagat 5540896  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||    
T  5540895 tttgaaggaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 5540832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 10663011 - 10663174
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||  ||| ||||||  ||| ||||||||||||||||    
T  10663011 tgatgacagtcagtcattcactatttttagagtctttttcatgatatgtt-gagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaaga 10663109  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  10663110 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcatgatttggagcacataatga 10663174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 337
Target Start/End: Complemental strand, 18722310 - 18722152
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||| || |||  ||| ||||||||||||||||    
T  18722310 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaaga 18722212  T
Q  279 tttt-gaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18722211 tttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 18722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 33878238 - 33878089
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||| |||| ||||||  ||| ||||||||||||||||    
T  33878238 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagaaagtttaaacagcaaagaaaacaagaaaaatagaaga 33878140  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgattt 329  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  33878139 ttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaattt 33878089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 25595681 - 25595521
Alignment:
Q  184 gacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagatttt 282  Q
    |||||||||||||||| | ||||||||||| |||| |||||||||| ||||||||| |||||||||| || |||  ||| ||||||||||||||||||||    
T  25595681 gacagtcagtcattcattgtttttagtgtcattttcatgatatttt-gagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttt 25595583  T
Q  283 -gaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25595582 tgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatga 25595521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 25228049 - 25228175
Alignment:
Q  215 ttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaa 314  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||  |||    
T  25228049 ttttatgatatttttgagttcacaagcaagctcaagaagcaagaaaaacaagaaaaatagaagattttgaagaaa--aaaatcgtgtctcgattgctgaa 25228146  T
Q  315 aacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||||||||||||||||    
T  25228147 aacgtgtcacgatttggagcacatgatga 25228175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 184 - 343
Target Start/End: Complemental strand, 25592496 - 25592336
Alignment:
Q  184 gacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagatttt 282  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||| || |||  ||| ||||||||||||||||||||    
T  25592496 gacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttt 25592398  T
Q  283 -gaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
     |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  25592397 tgaagaaagcaaaatcgtgtcacgattgttgaaaatgtgtcccgatttggagcacatgatga 25592336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 43682798 - 43682634
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt--atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaag 277  Q
    ||||| ||||||||||||||||||||||||| || ||||  |||||||||| ||||||| ||||||| |||| ||||||  ||| |||||||||||||||    
T  43682798 tgatggcagtcagtcattcactatttttagtatcatttttcatgatatttt-gagttcataagcaagtttaaacagcaaagaaagcaagaaaaatagaag 43682700  T
Q  278 attttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||| |||||    
T  43682699 attttgaagaaagcaaaatcgtgtcacgattattgaaaacgtgtcacaatttggaacacaggatga 43682634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 18826834 - 18826725
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||| ||||| || |||| ||| || |||||||| |||||    
T  18826834 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaaacttaaacaacaaggaaagcatgaaaaatacaagat 18826735  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  18826734 tttgaagaaa 18826725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 12582218 - 12582372
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||||| | ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||  |||||     
T  12582218 tgatgaaaatcaatcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagaaagaaaagcaagaaaaactgaagaa 12582317  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcg-aaaacgtgtcacgatttggagc 334  Q
      |||| ||||    |||||||||||||| | | ||||||||||||||||||||||    
T  12582318 actgaaaaaag-gggatcgtgtcacgattattgaaaaacgtgtcacgatttggagc 12582372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 15662749 - 15662654
Alignment:
Q  20 acatcatcatcaacaaattatcacatcattcttagaactacaacatcatctcaatagcactaacatcattaagtaaagatatccaagcacacgact 115  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||| |||| ||  |||||| |||||| ||||||| ||||||||||||||||||    
T  15662749 acatcatcatcaataaatcatcacatcattcttacaactacaacattatctaaagtgcactagcatcatcaagtaaatatatccaagcacacgact 15662654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 22174891 - 22174782
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||| |||||| |||||| |||||| |||| ||||| ||||||||||||||||||||||||| || |||| ||| || |||||||| ||||    
T  22174891 tgatgacagtcagccattcattatttt-agtgtcattttcatgatgtttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 22174793  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  22174792 ttttgaagaaa 22174782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 30640505 - 30640598
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt--tatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||| |||||||||||||| ||  ||||||  ||||||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  30640505 tgatgacagtcaatcattcactattttaagaatctttttttatgatacttttgagttcacaagcaagcttaagcagcaagaaatgcaagaaaaa 30640598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 14589816 - 14589707
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||| ||| ||||||||| ||||||||||||| |||| ||||| |||| |||||||||||||||||||  || |||| ||| || |||||||| ||||    
T  14589816 tgatgatagttagtcattcattatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttacacaacaaggaaagcatgaaaaatacaaga 14589718  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  14589717 ttttgaagaaa 14589707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 19792926 - 19793019
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt-tatgatatttttgagttcacaagc-aagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||| || |||||||| | |||||||    
T  19792926 tgatgacagtcggccattcactatttttagagtcttttttatgatatttttgagttcacaagcaaagattaaacaacaagaaaagctagaaaaa 19793019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 23612569 - 23612645
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtc-tttttatgatatttttgagttcacaagcaagcttaagcagcaa 256  Q
    |||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||||||| |||| ||||||    
T  23612569 tgatgacagtcagtcattcactatttttagtgtcattttgatgaga-ttttgagttcacaagcaagtttaaacagcaa 23612645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 5981220 - 5981150
Alignment:
Q  180 tgatgacagtcagtcatt-cactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaag 250  Q
    ||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  5981220 tgatgacagtccgtcatttcac-atttttagagtctttttatgatatttttgagttcacaagcaagtttaag 5981150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 38249312 - 38249248
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaag 290  Q
    |||||| ||||||||||||||||| ||||||| ||| || ||||| |  ||||||||||||||||    
T  38249312 ttttgaattcacaagcaagcttaaacagcaaggaaaacatgaaaagttaaagattttgaagaaag 38249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 20261647 - 20261686
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  20261647 tgatgacagtcagtcatacactatttttagagtcttttta 20261686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 21048277 - 21048316
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  21048277 tgatgacagtcagtcatacactatttttagagtcttttta 21048316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 16952998 - 16953038
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  16952998 tgatgacagtccgtcattcgctatttttagagtctttttat 16953038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 30640624 - 30640672
Alignment:
Q  295 atcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||||||| |||||||||||||  |||||| |||| |||||    
T  30640624 atcgtgtcacgattgttgaaaacgtgtcacactttggatcacaagatga 30640672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 29644308 - 29644145
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||| |||||||   |||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||     
T  29644308 tgatgacagtctgtcattccacatttatagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaaaaaaagcaagaaaaatagaagac 29644209  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  29644208 tttgaagaaagtaaaatcgtgtcacgattgttgaaaacgtatcacgatttggagcacaggatga 29644145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 2793299 - 2793462
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta-tgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| ||| ||  ||| ||||||||||||||||    
T  2793299 tgatgacagtcagtcgttcactatttttagagtctttttaatgatatttt-gagttcacaagcaagtttaaacagtaaagaaaacaagaaaaatagaaga 2793397  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  2793398 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 2793462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 49499568 - 49499405
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||||||| || ||||||||||  |||| |||||||||| ||||||||| |||||||||| || |||  ||| ||||||||||||||||    
T  49499568 tgatgacagtcagtcattcgctgtttttagtgttattttcatgatatttt-gagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaaga 49499470  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  49499469 ttttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagcatatgatga 49499405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 335
Target Start/End: Complemental strand, 1951345 - 1951190
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||||||||||||||| ||| || |||| ||||||| || ||||||||||||||| |||| ||||||  ||| ||||||||||||||||    
T  1951345 tgatgacagtcagtcattcactattttaagtatcattttcatgatatctt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaaga 1951247  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagca 335  Q
    |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1951246 tttcaaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagca 1951190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 41059234 - 41059135
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  41059234 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaatcgaaga 41059135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 2404722 - 2404809
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaaga 267  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtctttttataatatttttgagttcacaagcaagattaagcagcaagaaaagcaaga 2404809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 45961707 - 45961598
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| ||||| |||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| |||||    
T  45961707 tgatgacagtcagtcatttgctatttttagagtcttgttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 45961608  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  45961607 tttgaagaaa 45961598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 27537212 - 27537104
Alignment:
Q  181 gatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagatt 280  Q
    |||||||||||||||||  |||||||||  |||||||||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| ||||||    
T  27537212 gatgacagtcagtcatttgctatttttatagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagatt 27537113  T
Q  281 ttgaagaaa 289  Q
    |||||||||    
T  27537112 ttgaagaaa 27537104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 34733217 - 34733100
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacg 325  Q
    ||||||||||||||||||| |||| ||| ||| ||| || ||||| | ||||||||||||||||| ||||||||| ||||||||| |||||| ||||| |    
T  34733217 ttttgagttcacaagcaagattaaacagtaaggaaatcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaacatgtcagg 34733118  T
Q  326 atttggagcacatgatga 343  Q
    |||||||||||| |||||    
T  34733117 atttggagcacaggatga 34733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 21019367 - 21019287
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcgcaaccaagcttaagcagcaagaaaa 21019287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 42021721 - 42021812
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||| |||||| |||||||||| |||||||||| |||||  |||||||||||||||| ||||||||||| |||| |||||||||    
T  42021721 tgatgacagtcaatcattcgctatttttagagtctttttataatattactgagttcacaagcaagtttaagcagcaataaaagcaagaaaaa 42021812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 21108393 - 21108302
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| || ||||||| ||||| |||||||||||||||  ||| ||||||| |||||| ||||||||| |||||||||    
T  21108393 tgatgacagtcagtcattcgctctttttagagtcttcttatgatatttttgaactcaaaagcaagattaagctgcaagaaaagcaagaaaaa 21108302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 31204014 - 31204123
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||| ||||||||||||  ||||||||||||| |||| || || |||| |||||||||||||||||||| || |||| ||| || |||||||| ||||    
T  31204014 tgatgatagtcagtcattctttatttttagtgtcattttcattatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 31204112  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  31204113 ttttgaagaaa 31204123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 6071854 - 6071791
Alignment:
Q  226 ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    |||||||||||||||||||||||| || |||||||| || |||||||| |||||||||||||||    
T  6071854 ttttgagttcacaagcaagcttaaacaacaagaaaaacatgaaaaatacaagattttgaagaaa 6071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 47708817 - 47708778
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  47708817 tgatgacagtcagtcattcactatttttagagtcttttta 47708778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 22460443 - 22460406
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt 217  Q
    |||||||||||||||||||||||||||||| |||||||    
T  22460443 tgatgacagtcagtcattcactatttttagagtctttt 22460406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 45940621 - 45940661
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  45940621 tgatgacagtcagtcattcgctatttttagagtctttttat 45940661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 3088735 - 3088696
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  3088735 tgatgacagtcagtcatgcactatttttagagtcttttta 3088696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 22454319 - 22454290
Alignment:
Q  180 tgatgacagtcagtcattcactatttttag 209  Q
    ||||||||||||||||||||||||||||||    
T  22454319 tgatgacagtcagtcattcactatttttag 22454290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 49147113 - 49147150
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttt 217  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  49147113 tgatgacagtcaatcattcactatttttagagtctttt 49147150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 28110283 - 28110323
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  28110283 tgatgacagtccgtcattcgctatttttagagtctttttat 28110323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 37184783 - 37184743
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  37184783 tgatgacagtccgtcattcgctatttttagagtctttttat 37184743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 25869835 - 25869998
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||| |||| || |||  ||| ||||| ||||||||||    
T  25869835 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagaaagtttaaacaacaaagaaaacaagagaaatagaaga 25869933  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25869934 ttttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatga 25869998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 25873203 - 25873366
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||| ||||||||||    
T  25873203 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagagaaatagaaga 25873301  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  25873302 ttttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcatgatttggagcacaggatga 25873366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 26358672 - 26358835
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||| |||| ||||||  ||  ||||||||||||||||    
T  26358672 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaaggaagtttaaacagcaaagaagacaagaaaaatagaaga 26358770  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  26358771 tttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatga 26358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 36809435 - 36809272
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||| || |||  ||| ||||||||||||||||    
T  36809435 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 36809337  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||    
T  36809336 ttttgaggaaagcaaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcacaggatga 36809272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 38006286 - 38006123
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||| ||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||| ||||||||| || |||  ||| ||||| ||||||||||    
T  38006286 tgattacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaaacaagcttaaacaacaaagaaagcaagagaaatagaaga 38006188  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  38006187 ttttgaagaaagcaaaatcgtgtgacgattgtcgaaaacgtgtcacgatttggagcacaggatga 38006123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 25140040 - 25139877
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||||||||||||||||||   | |||||| || ||||||||||||||||||||||||||| |||||||| | ||||  ||| |||||||||||||||||    
T  25140040 tgatgacagtcagtcattccacaattttagagtttttttatgatatttttgagttcacaagtaagcttaaacggcaaagaaagcaagaaaaatagaagat 25139941  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    || |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  25139940 ttcgaagaaagcaaaatcgtgtcacgattgttgacaacgtgtcacgatttggagcacaagatga 25139877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 180 - 334
Target Start/End: Original strand, 16788389 - 16788542
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  ||||||||||  |||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  16788389 tgatgacagtcagtcatttgctatttttagaatctttt-atgataattttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataagat 16788487  T
Q  280 tttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagc 334  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  16788488 tttgatgaaagcacaatcgtgtcacgattgttgaaaacgtgtcacgatttagagc 16788542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 25821922 - 25821754
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatat---ttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaataga 275  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||   |||||||||||||||||||||||| || |||  ||| |||||||||||||    
T  25821922 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatatattttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaataga 25821823  T
Q  276 agatttt-gaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    ||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||| |||||    
T  25821822 agatttttgaagaaagcaaaatcgtgtcaagattgttgaaaaggtgtcacgatttggaacacaggatga 25821754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 334
Target Start/End: Complemental strand, 30275691 - 30275537
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||| ||||||||||||| ||||||||||||| |||| |||||||||| || ||||||| |||| |||| || |||  ||| ||||||||||||||||    
T  30275691 tgatgatagtcagtcattcaatatttttagtgtcattttcatgatatttt-gaattcacaaacaagtttaaacaacaaagaaaacaagaaaaatagaaga 30275593  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagc 334  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  30275592 ttttgaggaaagcaaattcgtgtcacgattgttgaaaacgtgtcacgatttggagc 30275537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 15466170 - 15466298
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||| ||||||||||    
T  15466170 tgatgacaatcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaaga 15466268  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgatt 308  Q
    ||||||||||||||||||||||||||||||    
T  15466269 ttttgaagaaagcaaaatcgtgtcacgatt 15466298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 10599951 - 10600042
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10599951 tgatgacagtcagtcattcactatttttagaatctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 10600042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 38014636 - 38014745
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| |||||    
T  38014636 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 38014735  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  38014736 tttgaagaaa 38014745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 3874482 - 3874573
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtctttttaggatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaa 3874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 31430638 - 31430529
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    |||||||||| |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| || |||| ||| || |||||||| |||||    
T  31430638 tgatgacagttagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagat 31430539  T
Q  280 tttgaagaaa 289  Q
    ||||||||||    
T  31430538 tttgaagaaa 31430529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 5665830 - 5665905
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagca 255  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5665830 tgatgacagtcaatcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagca 5665905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 43722904 - 43722985
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43722904 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaa 43722985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 13972813 - 13972725
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaa 268  Q
    |||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  13972813 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaa 13972725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 5104953 - 5105032
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    ||||||||||||||||||||||  |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5104953 tgatgacagtcagtcattcact--ttttagagtttttttatgatatttttgagttcacaagcaagattaagcagcaagaaaa 5105032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 13136764 - 13136853
Alignment:
Q  182 atgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||   ||||||||| ||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  13136764 atgacagtcagtcatttgttatttttagagtcattttatgatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaa 13136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 29439597 - 29439723
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    ||||||||||| |||||||  || |||||||||| |||| ||||| ||   ||||||||||||||| |||| ||||||  ||| ||||||||| ||||||    
T  29439597 tgatgacagtccgtcattcgttaattttagtgtcattttcatgatgtt---gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaaga 29439693  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgatt 308  Q
    ||| ||||||||||||||||||||||||||    
T  29439694 tttcgaagaaagcaaaatcgtgtcacgatt 29439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 36985732 - 36985626
Alignment:
Q  183 tgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattt 281  Q
    ||||||||||||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||| ||| ||  |||||||||||||||    
T  36985732 tgacagtcagtcattcgttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcagaaaaaatagaagattt 36985634  T
Q  282 tgaagaaa 289  Q
    ||||||||    
T  36985633 tgaagaaa 36985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 6825974 - 6826055
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 261  Q
    |||||||||||| ||||||  ||| ||||  |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6825974 tgatgacagtcaatcattcgttatatttaaagtctttttatgatatttttgagttcacaagcaagattaagcatcaagaaaa 6826055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 45453051 - 45453160
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| ||||||||||  ||||||||| ||| |||| ||||| |||| |||||||||||||||||||| || |||| ||| || |||||||| ||||    
T  45453051 tgatgacaatcagtcattctttatttttagggtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaaga 45453149  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  45453150 ttttgaagaaa 45453160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 31428414 - 31428340
Alignment:
Q  215 ttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    |||||||||| ||||||||||||||||||| |||| || |||| ||| || |||||||| |||||||||||||||    
T  31428414 ttttatgataattttgagttcacaagcaagtttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 31428340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 45456300 - 45456409
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||| |||| |||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||  ||| || |||||||| ||||    
T  45456300 tgatgacaatcagccattctttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaagaaagcatgaaaaatacaaga 45456398  T
Q  279 ttttgaagaaa 289  Q
    |||||||||||    
T  45456399 ttttgaagaaa 45456409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 9189572 - 9189532
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  9189572 tgatgacagtcagtcattcgctatttttagagtctttttat 9189532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 37280596 - 37280556
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  37280596 tgatgacagtcagtcattcgctatttttagagtctttttat 37280556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 43208809 - 43208769
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  43208809 tgatgacagtcagtcattcgctatttttagagtctttttat 43208769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 31586823 - 31586785
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt 218  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  31586823 tgatgacagtcagtcattcgctatttttagagtcttttt 31586785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 1504318 - 1504290
Alignment:
Q  180 tgatgacagtcagtcattcactattttta 208  Q
    |||||||||||||||||||||||||||||    
T  1504318 tgatgacagtcagtcattcactattttta 1504290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 1507520 - 1507492
Alignment:
Q  180 tgatgacagtcagtcattcactattttta 208  Q
    |||||||||||||||||||||||||||||    
T  1507520 tgatgacagtcagtcattcactattttta 1507492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 8887842 - 8887882
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  8887842 tgatgacagtccgtcattcgctatttttagagtctttttat 8887882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 25957363 - 25957323
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  25957363 tgatgacagtccgtcattcgctatttttagagtctttttat 25957323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 40780658 - 40780698
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttat 220  Q
    |||||||||||| |||||| |||||||||| ||||||||||    
T  40780658 tgatgacagtcaatcattcgctatttttagagtctttttat 40780698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 61597 - 61760
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||| || |||  ||| ||||| ||||||||||    
T  61597 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaaga 61695  T
Q  279 ttttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  61696 ttttaaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttgaaacacaagatga 61760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 246350 - 246232
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||| ||| |||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  246350 tgatgacggtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagat 246251  T
Q  280 tttgaagaaagcaaaatcg 298  Q
    |||||||||||||||||||    
T  246250 tttgaagaaagcaaaatcg 246232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 191 - 337
Target Start/End: Original strand, 290974 - 291120
Alignment:
Q  191 agtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaa 289  Q
    ||||||||||||||||||||||| |||| ||||||||||  |||||||||||||| |||| || |||  ||| |||||||||||||||||||||| ||||    
T  290974 agtcattcactatttttagtgtcattttcatgatatttta-agttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagattttgaggaaa 291072  T
Q  290 gcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcaca 337  Q
    ||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  291073 gcaaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcaca 291120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 197242 - 197358
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 279  Q
    ||||||||||| |||||||   |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  197242 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagaaaagcaagaaaaatagaagat 197341  T
Q  280 tttgaagaaagcaaaat 296  Q
    ||||||||||| |||||    
T  197342 tttgaagaaagtaaaat 197358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 4563 - 4654
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4563 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaatcaagaaaaa 4654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 26277 - 26408
Alignment:
Q  203 tttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagattttgaagaaagcaaaatcgtgtc 302  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||         |||||||||||||||||||||||||||||||||    
T  26277 tttttagagtctttttatgatatttttgagttcacaagcaaacataagcagcatgaaa---------aatagaagattttgaagaaagcaaaatcgtgtc 26367  T
Q  303 acgattgtcgaaaacgtgtcacgatttggagcacatgatga 343  Q
    |||||||| ||||||||||||||||||| |||||| |||||    
T  26368 acgattgttgaaaacgtgtcacgatttgaagcacaggatga 26408  T

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Target: scaffold0270 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 1060 - 969
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1060 tgatgacagtcagtcattcgctacttttagagtatttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 969  T

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Target: scaffold0270; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 4420 - 4329
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4420 tgatgtcagtcagtcattcgctacttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 4329  T

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Target: scaffold0270; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 11550 - 11459
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11550 tgatgtcagtcagtcattcgctacttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 11459  T

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Target: scaffold0334 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 304
Target Start/End: Original strand, 18463 - 18588
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||| || |||  ||| ||||||||||||||||    
T  18463 tgatgacagtcagtcattcactgtttttagtgtcattttcatgatatttt-gagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaaga 18561  T
Q  279 -ttttgaagaaagcaaaatcgtgtcac 304  Q
     ||||||||||||||||| ||||||||    
T  18562 tttttgaagaaagcaaaaacgtgtcac 18588  T

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Target: scaffold0381 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 6554 - 6462
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaagcaagaaaaa 6462  T

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Target: scaffold0520 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 4880 - 4790
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaa 270  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||  |||||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaaacaagattaagcagcaaaaaaagaaagaaaa 4790  T

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Target: scaffold0045 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 88965 - 89071
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||||||||||||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||| ||| || |||||||||||||    
T  88965 tgatgacagtcagtcattcgttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaaga 89063  T
Q  279 ttttgaag 286  Q
    ||||||||    
T  89064 ttttgaag 89071  T

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Target: scaffold1993 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 1045 - 1136
Alignment:
Q  180 tgatgacagtcagtcatt-cactatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 271  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||| ||| ||||||||||| |||||||| |||||||||    
T  1045 tgatgacagtcagtcatttcac-atttttagagtctttttatgatattttggagttcataaggaagcttaagcaccaagaaaagcaagaaaaa 1136  T

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Target: scaffold1684 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 474 - 369
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttt-atgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaaga 278  Q
    |||||| ||||||||||||  ||||||||||||| |||| ||||| |||| |||||||||||||||||||| || |||| ||  || |||||||| ||||    
T  474 tgatgaaagtcagtcattctttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaacgcatgaaaaatacaaga 376  T
Q  279 ttttgaa 285  Q
    |||||||    
T  375 ttttgaa 369  T

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Target: scaffold0567 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 7055 - 7016
Alignment:
Q  180 tgatgacagtcagtcattcactatttttagtgtcttttta 219  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  7055 tgatgacagtcagtcattcactatttttagagtcttttta 7016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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