View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_high_9 (Length: 351)
Name: NF21684_high_9
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 35667509 - 35667852
Alignment:
| Q |
10 |
ataatactccgacatgcttatgctctccttataaatagaggatacaattgtacgagcttatagaaccgatcatgttcaagcaaagagtcgtgcatttttc |
109 |
Q |
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| T |
35667509 |
ataatactccaacatgcttatgctctccttataaatagaggatacaattgtacgagcttatagaaccgatcatgttcaagcaaagagtcgtgcatttttc |
35667608 |
T |
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| Q |
110 |
tctctcttaaaaatcaaactaaaacacacaatttttcttacagatcaggatcgttgctcactattttgatattcaaatgtaaaatgtttttggtctaaat |
209 |
Q |
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| T |
35667609 |
tctctcttaaaaatcaaactaaaacccacaatttttcttacagatcaggatcgttactcactattttgatattcaaatgtaaaatatttttgttctaaat |
35667708 |
T |
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| Q |
210 |
tttgtatcaaatacattagactttatagaaaaataatatgacttgatatataaataaatttcaaggatgagagtag-nnnnnnnnnnagctaaatcgctt |
308 |
Q |
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| T |
35667709 |
tttgtatcaaatacattagactttatagaaaaataatatgacttgatatataaataaatttcaaggatgagagtagtttttttttttagctaaatcgctt |
35667808 |
T |
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| Q |
309 |
ctgtacatggatatagcatggttcaaatatt-gtctaatgaatc |
351 |
Q |
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| T |
35667809 |
ctgtacatggatatagcatggttcaaatattggtctaatgaatc |
35667852 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 32052391 - 32052439
Alignment:
| Q |
184 |
aaatgtaaaatgtttttggtctaaattttgtatcaaatacattagacttt |
233 |
Q |
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| T |
32052391 |
aaatgtaaaatgtatttggtctaaatttag-atcaaatacatttgacttt |
32052439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 33653259 - 33653218
Alignment:
| Q |
191 |
aaatgtttttggtctaaattttgtatcaaatacattagactt |
232 |
Q |
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| T |
33653259 |
aaatgtgtttggtctaaattttggaccaaatacattagactt |
33653218 |
T |
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