View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21684_low_1 (Length: 439)
Name: NF21684_low_1
Description: NF21684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21684_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 404
Target Start/End: Original strand, 4108807 - 4109197
Alignment:
| Q |
12 |
catcatcatctaaaaagtaaaaggccaaagtaaaagaaacatgacatagagaaatgacaaaaccgcgcgtgagggaagcatagaagaaagaaataggaag |
111 |
Q |
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| T |
4108807 |
catcatcatctaaaaagtaaaaggccaaagtaaaagaaacatgacatagagaaatgacaaaaccgcgcgtgagggaagcatagaagaaagaaataggaag |
4108906 |
T |
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| Q |
112 |
agggtgttgttatgttaaggtgaagaaaaacactagttcaatgatgtaagcaagcacaaagtcttcttcttttcatttttataaataaaatctcccacaa |
211 |
Q |
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| T |
4108907 |
agggtgttgttatgttaaggtgaagaaaaacactagttcaatgatgtaagcaagcacaaagtcttcttcttttcatttttataaataaaatctcccacaa |
4109006 |
T |
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| Q |
212 |
ttccaacactaacacttcttannnnnnnnnnnnnnnnnnncttccttcattcattaaattgaaataatttcacacacttcatcacccac----ccatcct |
307 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4109007 |
ttccaacactaacacttctta------ctctctctctctccttccttcattcattaaattgaaataatttcacacacttcatcacccacccatccatcct |
4109100 |
T |
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| Q |
308 |
caatcatctttccttctcccaccctcccacctttccctccttcatattatgcaagacctacgtcgttactcaaacgacaccattcaactagacctag |
404 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4109101 |
caatcatcttcccttctcccaccctcccacctttccctccttcatattatgcaagacctacgtcgttactcaaacgacaccattcaactagacctag |
4109197 |
T |
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