View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_high_10 (Length: 390)
Name: NF21685_high_10
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 46039357 - 46039041
Alignment:
| Q |
17 |
caatcaatgtttgcatgtgtatgtgcagcaccacagagacaatacagtgatctagcagaagctaatgatgccccaatatagatgttttagtctatcaatg |
116 |
Q |
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| T |
46039357 |
caatcaatgtttgcatgtgtaaatccagcactacagagacaatacagtgatctagcagaagctaatgatgccccaatatagatgttgtagtctatcaatg |
46039258 |
T |
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| Q |
117 |
aggtgtcagtttagtggtaagaatttgatcttttatcctcaagagatattcaaacctcctagggaacactagtaaaatagtcattaatgtcgctttaatt |
216 |
Q |
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| T |
46039257 |
aggtgtcagtttagtggtaagaatttgatcttttatcctcaagagatattcaaacctcctagggaacactggtaaaatagtcattaatgtcgctttaatt |
46039158 |
T |
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| Q |
217 |
aatgatagaatcttaattttannnnnnnncaattcttcttgagattagttatatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtc |
316 |
Q |
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| T |
46039157 |
aacgatagaatctgaatttga-tttttttcaattcttcttgagattaagt-tatgctttaaatagtgaggatgtttttatatacaaacttttagcatgtc |
46039060 |
T |
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| Q |
317 |
agcatttgcatgtgtctat |
335 |
Q |
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| T |
46039059 |
agcatttgcatgtgtctat |
46039041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 46039019 - 46038987
Alignment:
| Q |
335 |
tatagatgattgtatcttgatttcaatggatat |
367 |
Q |
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| T |
46039019 |
tatagatgattgtatcttgatttcaatggatat |
46038987 |
T |
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