View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_high_14 (Length: 344)
Name: NF21685_high_14
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 47688528 - 47688194
Alignment:
| Q |
10 |
gcatagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaacaaggat |
109 |
Q |
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| T |
47688528 |
gcatagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaacaaggat |
47688429 |
T |
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| Q |
110 |
tatctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcataaaag |
209 |
Q |
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| T |
47688428 |
tatctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcataaaag |
47688329 |
T |
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| Q |
210 |
ttaaaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaa |
309 |
Q |
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| T |
47688328 |
ttaaaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaa |
47688229 |
T |
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| Q |
310 |
aggttttcgccgccatcaccaccgccgcctcgacc |
344 |
Q |
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| T |
47688228 |
aggttttcgccgccatcaccaccgccgcctcgacc |
47688194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 35836306 - 35836358
Alignment:
| Q |
278 |
actagttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
330 |
Q |
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| T |
35836306 |
actaattcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
35836358 |
T |
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