View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_high_16 (Length: 342)
Name: NF21685_high_16
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 23 - 342
Target Start/End: Complemental strand, 9663402 - 9663083
Alignment:
| Q |
23 |
atcagttgtggattagagcctaatattttggttctcacaatgtttgtacattgctatggaaaagccaaacgaactaatgatgttgtgaatatatttaatc |
122 |
Q |
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| T |
9663402 |
atcagttgtggattagagcctaatattttggttctcacaatgtttgtacattgctatggaaaagccaaacgaactaatgatgttgtgaatatatttaatc |
9663303 |
T |
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| Q |
123 |
aatttatggataccggaatcacccctgatgatcgtttgtgtgattgtcttttgtatgtcatgactcaaataccgaaagaagaatatggtaagataacaaa |
222 |
Q |
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| T |
9663302 |
aatttatggataccggaatcacccctgatgatcgtttgtgtgattgtcttttgtatgtcatgactcaaataccgaaagaagaatatggtaagataacaaa |
9663203 |
T |
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| Q |
223 |
ttgcattcagaaagctaacccaaggcttggttatattgtgacatatttgatggaagagaatgagggtgatgatgacggaaattttatgaaggaaacatca |
322 |
Q |
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| T |
9663202 |
ttgcattcagaaagctaacccaaggcttggttatattgtgacatatttgatggaagagaatgagggtgatgatgacggaaattttatgaaggaaacatca |
9663103 |
T |
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| Q |
323 |
gaacttttaagttcagctga |
342 |
Q |
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| T |
9663102 |
gaacttttaagttcagctga |
9663083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 290
Target Start/End: Complemental strand, 9649140 - 9648923
Alignment:
| Q |
73 |
ttgctatggaaaagccaaacgaactaatgatgttgtgaatatatttaatcaatttatggataccggaatcacccctgatgatcgtttgtgtgattgtctt |
172 |
Q |
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| T |
9649140 |
ttgctatggaaatgccaaacgaactgatgatgttgtgaggatatttgataaacttttggatttaggtattagttctgatgatcgcttgtgcggccgtctt |
9649041 |
T |
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| Q |
173 |
ttgtatgtcatgactcaaataccgaaagaagaatatggtaagataacaaattgcattcagaaagctaacccaaggcttggttatattgtgacatatttga |
272 |
Q |
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| T |
9649040 |
ctgcatgtaatgacacgaataccaaaacaagaacttggtaaaataacagattgcattgagaaggctaatccaaagcttggttttgtggttagaaatttga |
9648941 |
T |
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| Q |
273 |
tggaagagaatgagggtg |
290 |
Q |
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| T |
9648940 |
tggaagagagggagggtg |
9648923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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