View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_high_17 (Length: 340)
Name: NF21685_high_17
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 51008384 - 51008588
Alignment:
| Q |
140 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
239 |
Q |
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| T |
51008384 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
51008483 |
T |
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| Q |
240 |
agacattcattggtataagcaactttgtttctacttgatttgcttagataatatttttgg----tataagctgttttatgtatgcatatgatctaaatat |
335 |
Q |
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| T |
51008484 |
agacattcattggtataagcaaatttgtttctacttgatttgcttagataatatttttggtatatataagctgttttatgtatgcatatgatctaaatat |
51008583 |
T |
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| Q |
336 |
tttga |
340 |
Q |
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||||| |
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| T |
51008584 |
tttga |
51008588 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 51008262 - 51008359
Alignment:
| Q |
22 |
catcatcaccaactaatcttataatatcttcatttttctgcctcctttctttc--------ctaacacattaatcaattaaatcaaaattattattta |
111 |
Q |
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| T |
51008262 |
catcatcaccaactaatcttataatatcttcatttttctgcctcctttctttcctaacaaactaacacattaattaaataaatcaaaattattattta |
51008359 |
T |
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