View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_high_18 (Length: 339)
Name: NF21685_high_18
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_18 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0129 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 32 - 339
Target Start/End: Original strand, 9866 - 10173
Alignment:
| Q |
32 |
gttattaacggaattgtttgtctttaccatagtggtacaaatgttgtattatggaatccaactaacgatgaatttaaggtccttcctgaaagccctactg |
131 |
Q |
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| T |
9866 |
gttattaacggaattgtttgtctttaccaaagtggtacaaatgttgtattatggaatccaactaacggcgaatttaaggtgcttcctgaaagtcctactg |
9965 |
T |
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| Q |
132 |
atttagagccctcagtacgttatgagattgaactggaacgacttcatggatttggttatgacagtgttagcgacgactataaggtgattcgccatgtaca |
231 |
Q |
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| T |
9966 |
agttagagccctcagtacgttatgagattgaactggaacgacttcatggatttggttatgacagtgttagcgacgactataaggtgattcgccatgtaca |
10065 |
T |
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| Q |
232 |
gtatgaactgaatttatccgactatgaaaatgaagatagcgactttgaaggtgatgcgttatctgactatgaaagtgatgcggtaagtctgccaactagc |
331 |
Q |
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| T |
10066 |
gtatgaactgaatttatccgactatgaaaatgatgatagcgactttgaaggtgatgcgttatctgactatgaaagcgatgcggtaagtctgccaactagc |
10165 |
T |
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| Q |
332 |
atgtcacg |
339 |
Q |
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| T |
10166 |
atgtcacg |
10173 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 42445888 - 42445937
Alignment:
| Q |
173 |
cttcatggatttggttatgacagtgttagcgacgactataaggtgattcg |
222 |
Q |
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| T |
42445888 |
cttcatggatttggttatgacagtgttacagatgactataaggtcattcg |
42445937 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 16228154 - 16228117
Alignment:
| Q |
74 |
gttgtattatggaatccaactaacgatgaatttaaggt |
111 |
Q |
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| T |
16228154 |
gttgtattgtggaatccaactaccgatgaatttaaggt |
16228117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 4027476 - 4027516
Alignment:
| Q |
174 |
ttcatggatttggttatgacagtgttagcgacgactataag |
214 |
Q |
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| T |
4027476 |
ttcatggatttggttatgaccgtgttagagatgactataag |
4027516 |
T |
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