View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21685_high_1_N (Length: 1069)

Name: NF21685_high_1_N
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21685_high_1_N
NF21685_high_1_N
[»] chr8 (3 HSPs)
chr8 (23-1063)||(38341641-38342666)
chr8 (926-1063)||(38333888-38334025)
chr8 (715-744)||(16515088-16515117)
[»] chr3 (2 HSPs)
chr3 (771-874)||(37549926-37550029)
chr3 (636-687)||(31148873-31148924)
[»] chr2 (5 HSPs)
chr2 (771-874)||(37422857-37422960)
chr2 (697-778)||(21449705-21449781)
chr2 (667-744)||(41873714-41873792)
chr2 (780-828)||(13728636-13728685)
chr2 (695-732)||(37423155-37423192)
[»] chr4 (8 HSPs)
chr4 (771-875)||(16502583-16502688)
chr4 (771-874)||(53504679-53504782)
chr4 (781-828)||(38870592-38870639)
chr4 (771-845)||(40020673-40020752)
chr4 (771-867)||(3479153-3479248)
chr4 (712-744)||(38870697-38870729)
chr4 (627-685)||(16502241-16502299)
chr4 (712-742)||(49445045-49445075)
[»] chr1 (5 HSPs)
chr1 (772-867)||(19607208-19607304)
chr1 (766-842)||(11046900-11046978)
chr1 (773-875)||(13818793-13818895)
chr1 (692-744)||(40077026-40077078)
chr1 (709-744)||(50845719-50845754)
[»] scaffold0493 (1 HSPs)
scaffold0493 (761-828)||(4167-4234)
[»] chr6 (2 HSPs)
chr6 (627-686)||(779494-779553)
chr6 (667-741)||(10525381-10525454)
[»] chr7 (3 HSPs)
chr7 (771-817)||(45249228-45249274)
chr7 (692-739)||(8530377-8530423)
chr7 (771-858)||(44208508-44208595)
[»] chr5 (7 HSPs)
chr5 (771-873)||(29465695-29465797)
chr5 (778-874)||(15047156-15047253)
chr5 (770-815)||(29075674-29075719)
chr5 (619-664)||(37910342-37910387)
chr5 (649-688)||(19176059-19176098)
chr5 (623-681)||(22771161-22771219)
chr5 (771-841)||(31673991-31674063)


Alignment Details
Target: chr8 (Bit Score: 896; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 23 - 1063
Target Start/End: Complemental strand, 38342666 - 38341641
Alignment:
Q  23 acttctgcactcagcacctcacactacacttataccaaattcaattacaccactagaagccaaaaaacttctgcggtgtgtagcagaacagaaccaa--- 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||       
T  38342666 acttctgcacccagcacctcacactacacttataccaaattcaattgcaccactccaagccaaaaaacttctgcggtgtgtagcagaacagaaccaacca 38342567  T
Q  120 -gtatgctcacttctttctcaatcaaagaattgtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagc 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342566 agtatgctcacttctttctcaatcaaagaattgtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagc 38342467  T
Q  219 catcacagacaattgaattcattacatacctggacctatttaccacaaccattttcttggtatcccaacacagtctccgtgactgggctctatcaaaaca 318  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38342466 catcacagacaattgaattcattacatacccagacctatttaccacaaccattttcttggtatcccaacacagtctctgtgactgggctctatcaaaaca 38342367  T
Q  319 atatgcagaattattctccaattttgtgcccagataatctccaacatcctactagaatatatgccacgccacaacatcagcatgcattcacgcccaaagc 418  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38342366 atatgcagaattattctccaattttgtgcccaaataatctccaacatcctactagaatatatgccacgccacaacatcagcacgcattcacgcccaaagc 38342267  T
Q  419 accaactctagattatagctcagctttgttccagctgctatccgccaaagaaattataattctcagctgctctctcaaccaactcgaagctttatctttt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342266 accaactctagattatagctcagctttgttccagctgctatccgccaaagaaattataattctcagctgctctctcaaccaactcgaagctttatctttt 38342167  T
Q  519 cttctacctcaaaataagcactaccctgacatgtgtaaatatatgttattatgatttgtcatctttttcacgtctctgatttgtgtttctgattgtgtag 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38342166 cttctacctcaaaataagcactaccctgacatgtgtaaatatatgttattatgatttgtcatctttttcacttctctgatttgtgtttctgattgtgtag 38342067  T
Q  619 ttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagag 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342066 ttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagag 38341967  T
Q  719 tatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttc 818  Q
    |||||||||||||| |||||||| |||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341966 tatgtgtataaataggagaacac-aaaggttag------------------atattgtaaaggggaaacccttggaggagagattatctcccattctttc 38341886  T
Q  819 ctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagn 918  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38341885 ctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggaga 38341786  T
Q  919 nnnnnncctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaac 1018  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341785 aaaaaacctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaac 38341686  T
Q  1019 tgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcc 1063  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38341685 tgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcc 38341641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 926 - 1063
Target Start/End: Complemental strand, 38334025 - 38333888
Alignment:
Q  926 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaa 1025  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||| | || ||||||||||||| | || |||   ||||    
T  38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcagctagtaaacctactaa 38333926  T
Q  1026 aaacccatttaacaaggctgttgaggttgatgatgtcc 1063  Q
    |||| |||| ||  |||||||| | | |||||||||||    
T  38333925 aaactcattgaatgaggctgttaacggtgatgatgtcc 38333888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 715 - 744
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  715 agagtatgtgtataaataagagaacacaaa 744  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 771 - 874
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 870  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  871 acaa 874  Q
    ||||    
T  37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 687
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  636 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 687  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 771 - 874
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 870  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
Q  871 acaa 874  Q
    ||||    
T  37422860 acaa 37422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 697 - 778
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  697 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 778  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 744
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  667 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 744  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 780 - 828
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  780 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 828  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 732
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  695 tagttattcggattggttagagagtatgtgtataaata 732  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 771 - 875
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 869  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
Q  870 aacaat 875  Q
    ||||||    
T  16502683 aacaat 16502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 771 - 874
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 870  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
T  53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
Q  871 acaa 874  Q
    ||||    
T  53504779 acaa 53504782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 781 - 828
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  781 gggaaacccttggaggagagattatctcccattctttcctatttctta 828  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 771 - 845
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 845  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 867
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 867  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
T  3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 712 - 744
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  712 tagagagtatgtgtataaataagagaacacaaa 744  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 627 - 685
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  627 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 685  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 712 - 742
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  712 tagagagtatgtgtataaataagagaacaca 742  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 772 - 867
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
Q  772 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 867  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 766 - 842
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  766 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 842  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 773 - 875
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
Q  773 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 872  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
Q  873 aat 875  Q
    |||    
T  13818795 aat 13818793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 744
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  692 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 744  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 744
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  709 ggttagagagtatgtgtataaataagagaacacaaa 744  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 761 - 828
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  761 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 828  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  627 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 686  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 667 - 741
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  667 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 741  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 771 - 817
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 817  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 739
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  692 agttagttattcggattggttagagagtatgtgtataaataagagaac 739  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 771 - 858
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 858  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
T  44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 771 - 873
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 870  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
T  29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
Q  871 aca 873  Q
    |||    
T  29465795 aca 29465797  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 778 - 874
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
Q  778 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 874  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 770 - 815
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  770 atattgtaaaggggaaacccttggaggagagattatctcccattct 815  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 619 - 664
Target Start/End: Complemental strand, 37910387 - 37910342
Alignment:
Q  619 ttgatttgtgttgggatatagaataatggctaattagagtagttaa 664  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  37910387 ttgagttgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 688
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  649 taattagagtagttaatctagttaagagttgttatagtca 688  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 681
Target Start/End: Original strand, 22771161 - 22771219
Alignment:
Q  623 tttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 681  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771161 tttgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 771 - 841
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  771 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 841  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

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