View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21685_high_20 (Length: 339)

Name: NF21685_high_20
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21685_high_20
NF21685_high_20
[»] chr7 (3 HSPs)
chr7 (11-207)||(11504425-11504622)
chr7 (4-207)||(18939788-18939987)
chr7 (54-107)||(24760519-24760572)
[»] chr6 (3 HSPs)
chr6 (37-207)||(20909730-20909899)
chr6 (37-207)||(20924178-20924347)
chr6 (4-178)||(27445062-27445236)
[»] chr1 (1 HSPs)
chr1 (37-207)||(41326624-41326794)
[»] scaffold0003 (2 HSPs)
scaffold0003 (4-178)||(42122-42296)
scaffold0003 (4-178)||(35452-35625)
[»] chr8 (2 HSPs)
chr8 (37-207)||(42312844-42313014)
chr8 (7-184)||(43227134-43227309)
[»] chr3 (3 HSPs)
chr3 (7-107)||(52310804-52310904)
chr3 (7-107)||(53689993-53690093)
chr3 (54-107)||(52127954-52128007)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 11504425 - 11504622
Alignment:
Q  11 gtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattg-aattcacttgctttttgaatcatcttagagtttgttgttctatgttcn 109  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| || |  ||||||||||||||||||||  || ||||||||| |||||||||||      
T  11504425 gtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaccaatacaattcacttgctttttgaattttcctagagtttggtgttctatgttaa 11504524  T
Q  110 nnnnnnttaaaaccactaccatatgatgaagcaagaattttagaagcaagtgttgtttgataggaagatctctctgtaatcgaatacgtcttacttga 207  Q
          |||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||| ||| |||||||||| |||||| ||||||    
T  11504525 aaaaatttaaaaccactaccatatgatgaagcaagagttttagaatcaagtgttgtttgacatgaagatatctttgtaatcgaagacgtctcacttga 11504622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 18939987 - 18939788
Alignment:
Q  4 gagtttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaac-attgaattcacttgctttttgaatcatcttagagtttgttgttct 102  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| |||| | |   ||||||||||||||||||||  |||||||| ||  ||||||    
T  18939987 gagttcggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaccaaaacaattcacttgctttttgaattttcttagaggtttgtgttct 18939888  T
Q  103 atgttcnnnnnnnttaaaaccactaccatatgatgaagcaagaattttagaagcaagtgttgtttgataggaagatctctctgtaatcgaatacgtctta 202  Q
    |||||          |||| ||||| ||||||||||| ||||| |||||||| |||||||||||||  |||||||| ||| | | |||||| ||||||||    
T  18939887 atgttaaaaaa----aaaaacactaacatatgatgaatcaagagttttagaatcaagtgttgtttggaaggaagatatctttat-atcgaagacgtctta 18939793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 24760519 - 24760572
Alignment:
Q  54 gaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgtt 107  Q
    ||||||||||||||||||| |||||| || | |||| ||||| |||||||||||    
T  24760519 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgtt 24760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 20909899 - 20909730
Alignment:
Q  37 atagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgttcnnnnnnnttaaaaccactaccatatgat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||        ||||| ||||| |||||||||    
T  20909899 atagaaagaggctacgagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttagaaaaaattaaa-ccactgccatatgat 20909801  T
Q  137 gaagcaagaattttagaagcaagtgttgtttgataggaagatctctctgtaatcgaatacgtcttacttga 207  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||||||||    
T  20909800 gaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttga 20909730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 20924347 - 20924178
Alignment:
Q  37 atagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgttcnnnnnnnttaaaaccactaccatatgat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||        ||||| ||||| |||||||||    
T  20924347 atagaaagaggctacgagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttagaaaaaattaaa-ccactgccatatgat 20924249  T
Q  137 gaagcaagaattttagaagcaagtgttgtttgataggaagatctctctgtaatcgaatacgtcttacttga 207  Q
    ||||||||| |||||||| ||||||||||| || ||||||||||||||||||| ||| |||||||||||||    
T  20924248 gaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttga 20924178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 27445062 - 27445236
Alignment:
Q  4 gagtttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttcta 103  Q
    |||||| ||||| |||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  27445062 gagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatgagaacattgagttcacttgctttttgaatcttcttagagtttggtgttcta 27445161  T
Q  104 tgttcnnnnnnnttaaaaccactaccatatgatgaagcaagaattttagaagcaagtgttgtttgataggaagat 178  Q
    ||||        ||||||||||||||||| |||||||||| | |||||||| ||| ||||| |||| ||||||||    
T  27445162 tgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagat 27445236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 41326794 - 41326624
Alignment:
Q  37 atagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgttcnnnnnnnttaaaaccactaccatatgat 136  Q
    ||||||||||||||  |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||         | |||||||| |||||||||    
T  41326794 atagaaagaggctataagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctatgttagaaaaaaattaaaccactgccatatgat 41326695  T
Q  137 gaagcaagaattttagaagcaagtgttgtttgataggaagatctctctgtaatcgaatacgtcttacttga 207  Q
    ||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||    
T  41326694 gaagcaagagttttagaatcaagttttgttcgacaggaagatctctctgtaatcgaagacgtcttacttga 41326624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 42296 - 42122
Alignment:
Q  4 gagtttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttcta 103  Q
    |||||| ||||| |||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  42296 gagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatgagaacattgagttcacttgctttttgaatcttcttagagtttggtgttcta 42197  T
Q  104 tgttcnnnnnnnttaaaaccactaccatatgatgaagcaagaattttagaagcaagtgttgtttgataggaagat 178  Q
    ||||        ||||||||||||||||| |||||||||| | |||||||| ||| ||||| |||| ||||||||    
T  42196 tgttaaaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagat 42122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 35625 - 35452
Alignment:
Q  4 gagtttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttcta 103  Q
    |||||| ||||| |||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||| |||  ||||||| |||||||    
T  35625 gagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatgagaacattgagttcacttgctttttgaatcttctatgagtttggtgttcta 35526  T
Q  104 tgttcnnnnnnnttaaaaccactaccatatgatgaagcaagaattttagaagcaagtgttgtttgataggaagat 178  Q
    ||||        ||||||||||||||||| |||||||||| | |||||||| ||| ||||| |||| ||||||||    
T  35525 tgtt-aaaaaaattaaaaccactaccataggatgaagcaatagttttagaatcaaatgttgattgacaggaagat 35452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 207
Target Start/End: Complemental strand, 42313014 - 42312844
Alignment:
Q  37 atagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgttcnnnnnnnttaaaaccactaccatatgat 136  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||| |||||||||||         | |||||||| ||||| |||    
T  42313014 atagaaagaggctacgagtacattgaattcacttgctttttgtatcttcttatagtttggtgttctatgttagaaaaaaattaaaccactgccatacgat 42312915  T
Q  137 gaagcaagaattttagaagcaagtgttgtttgataggaagatctctctgtaatcgaatacgtcttacttga 207  Q
    ||||||||| | |||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  42312914 gaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttga 42312844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 43227134 - 43227309
Alignment:
Q  7 tttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgt 106  Q
    ||||||||| |||||| ||||||| ||| |||||||||| |||| |||||||||||||||||||| |||||||||| || | ||||||| ||||||||||    
T  43227134 tttggtgttacaaagtgagcttgagaatatatagaaagatgctatgagaacattgaattcacttgatttttgaatc-tcattgagtttggtgttctatgt 43227232  T
Q  107 tcnnnnnnnttaaaaccactaccatatgatgaagcaagaattttagaagcaagtgttgtttgataggaagatctctct 184  Q
    |        ||||||| ||||||||| |||||||||||| |||||||| |||||||| ||||| |||||||| |||||    
T  43227233 t-aaaaaaattaaaactactaccataggatgaagcaagagttttagaatcaagtgttctttgacaggaagatatctct 43227309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 52310904 - 52310804
Alignment:
Q  7 tttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgt 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  52310904 tttggtgtttcaaagtgagcttgaaaatctatagaaagaggctatgagaacattaaattcactttctttttgaatcttcttagagtttggtgttctatgt 52310805  T
Q  107 t 107  Q
    |    
T  52310804 t 52310804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 53689993 - 53690093
Alignment:
Q  7 tttggtgtttcaaagttagcttgaaaatctatagaaagaggctacgagaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgt 106  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  53689993 tttggtgtttcaaagtgagcttgaaaatctatagaaagatgctatgagaacattgaattcactttctttttgaatcttcttagagtttggtgttctatgt 53690092  T
Q  107 t 107  Q
    |    
T  53690093 t 53690093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 52127954 - 52128007
Alignment:
Q  54 gaacattgaattcacttgctttttgaatcatcttagagtttgttgttctatgtt 107  Q
    ||||||||||||||||||| |||||| || | |||| ||||| |||||||||||    
T  52127954 gaacattgaattcacttgcattttgattccttttagggtttggtgttctatgtt 52128007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University