View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21685_high_23 (Length: 332)
Name: NF21685_high_23
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_23 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 3955782 - 3955480
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3955782 |
gacatcattagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttg |
3955683 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3955682 |
ttgcactaaaaaaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
3955583 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3955582 |
tattgtgaagctttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgat |
3955483 |
T |
|
| Q |
311 |
gtc |
313 |
Q |
| |
|
||| |
|
|
| T |
3955482 |
gtc |
3955480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 2321032 - 2321332
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
2321032 |
gacatcattagagcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2321131 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
2321132 |
ttgccttgaagaaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaa |
2321231 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| | |||||||| ||||| || || ||||| | || ||| ||||||||||||||| |||||||| |
|
|
| T |
2321232 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgtatgatgat |
2321331 |
T |
|
| Q |
311 |
g |
311 |
Q |
| |
|
| |
|
|
| T |
2321332 |
g |
2321332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 1557734 - 1557433
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
1557734 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttg |
1557635 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||| ||||| |||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||| | | |
|
|
| T |
1557634 |
ttgctttaaagaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaaca |
1557535 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||| ||||||||||||||||| || ||||| |||||| | |||||||| || ||||| || ||||| |||| |||||||||||| |||||| |||||||| |
|
|
| T |
1557534 |
tatcgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1557435 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
1557434 |
gt |
1557433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 1604226 - 1604527
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||| | |||||||| ||||||| ||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1604226 |
gacatcgttagagcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1604325 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| |||| |||||| |||||| ||||||| ||||| | |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
1604326 |
ttgccttaaagaaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgaca |
1604425 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| |||| |||||||||||| |||||| |||||||| |
|
|
| T |
1604426 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1604525 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
1604526 |
gt |
1604527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 1541790 - 1541489
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| || ||| |
|
|
| T |
1541790 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttg |
1541691 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||| ||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
1541690 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1541591 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| | |||||||| |||||||| || ||||| | || |||||| ||||| |||||| |||||||| |
|
|
| T |
1541590 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgtatgatgat |
1541491 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
1541490 |
gt |
1541489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 1595896 - 1596197
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| | |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| || ||| |
|
|
| T |
1595896 |
gacataatcaaagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttg |
1595995 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||| ||||| |||||| ||||||| ||||| | ||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
1595996 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1596095 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| ||||||||||| ||||| |||| |||| ||||||| |||||| |||||||| |
|
|
| T |
1596096 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgat |
1596195 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
1596196 |
gt |
1596197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 1088501 - 1088791
Alignment:
| Q |
22 |
agcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactnnnn |
121 |
Q |
| |
|
||||||| | ||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||| | |
|
|
| T |
1088501 |
agcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaag |
1088600 |
T |
|
| Q |
122 |
nnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagc |
221 |
Q |
| |
|
||||| |||| ||||| ||||| |||||| ||||||| ||||| | ||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
1088601 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaacatattgtgaagc |
1088700 |
T |
|
| Q |
222 |
tttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgatgt |
312 |
Q |
| |
|
|||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| |||| |||||||||||| |||||| |||||||||| |
|
|
| T |
1088701 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1088791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 1105839 - 1106140
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| | |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1105839 |
gacataatcaaagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1105938 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| |||| ||||| |||||| ||||||| ||||| | ||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
1105939 |
ttgccttaaagaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1106038 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| ||||||||||| ||||| |||| |||| ||||||| ||||| |||||||| |
|
|
| T |
1106039 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgtatgatgat |
1106138 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
1106139 |
gt |
1106140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 2329530 - 2329828
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| ||| ||| |
|
|
| T |
2329530 |
gacatcattaaagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2329629 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
||||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||| ||||||||| | | |
|
|
| T |
2329630 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggca |
2329729 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatga |
309 |
Q |
| |
|
||| ||||||||||||||||| ||| | || | |||| | |||||||| ||||| |||| ||||| |||| ||||||||||| |||||| ||||||| |
|
|
| T |
2329730 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatga |
2329828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 2337440 - 2337727
Alignment:
| Q |
22 |
agcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactnnnn |
121 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||| ||| |||||||| | |
|
|
| T |
2337440 |
agcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttgttgcaataaag |
2337539 |
T |
|
| Q |
122 |
nnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagc |
221 |
Q |
| |
|
||||| |||| ||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||| || |||| ||||||| |
|
|
| T |
2337540 |
aaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgacatatcgtgaagc |
2337639 |
T |
|
| Q |
222 |
tttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatga |
309 |
Q |
| |
|
|||||||||| ||| | || | |||| | |||||||| ||||| |||| ||||| |||| ||||||||||| | |||| ||||||| |
|
|
| T |
2337640 |
tttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatga |
2337727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 1551013 - 1550723
Alignment:
| Q |
22 |
agcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactnnnn |
121 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| || |||| || | |
|
|
| T |
1551013 |
agcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgtcgccttaaag |
1550914 |
T |
|
| Q |
122 |
nnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagc |
221 |
Q |
| |
|
|||||| |||| |||||||| || |||||| ||||||| ||||| ||||||||||||| |||||| |||||||||||||| || |||||||||||| |
|
|
| T |
1550913 |
aaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgacatattgtgaagc |
1550814 |
T |
|
| Q |
222 |
tttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgatgt |
312 |
Q |
| |
|
|| ||||||| || ||||| || ||| | |||||||| ||||||||||| ||||| | || |||||||||| | |||||| |||| ||||| |
|
|
| T |
1550813 |
ttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgtatgacgatgt |
1550723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 9532353 - 9532119
Alignment:
| Q |
33 |
actttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactnnnnnnncttcatag |
132 |
Q |
| |
|
|||||||||||| ||||||||| | | ||||||||||| |||||| |||||| | ||||||||| ||| ||| |||| || | ||||| | |
|
|
| T |
9532353 |
actttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttgtcgccttaaagaaacttcacat |
9532254 |
T |
|
| Q |
133 |
ctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattt |
232 |
Q |
| |
|
||| |||||||||||||||||| |||||| ||||| | |||||||| || |||||||| | ||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
9532253 |
ctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaatattgttaagctttatggatta |
9532154 |
T |
|
| Q |
233 |
tgtttgcataaaagagttatgttttttatctatca |
267 |
Q |
| |
|
|| ||| | |||||| | |||||||| |||||||| |
|
|
| T |
9532153 |
tgattgtacaaaagaatcatgtttttgatctatca |
9532119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 30792297 - 30792379
Alignment:
| Q |
163 |
aagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgtttgcataaaa |
245 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||| |||| || ||||| |||| |
|
|
| T |
30792297 |
aagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaagctttatagattctgcttgcacaaaa |
30792379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 9631766 - 9631810
Alignment:
| Q |
192 |
cagaaataaagcacagaaatattgtgaagctttatggattttgtt |
236 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9631766 |
cagaaacaaggcacagaaacattgtgaagctttatggattttgtt |
9631810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 1440 - 1139
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1440 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1341 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
1340 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1241 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| |||| |||||||||||| |||||| |||||||| |
|
|
| T |
1240 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1141 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
1140 |
gt |
1139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 6327 - 6026
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
||||| |||| ||| ||| ||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
6327 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
6228 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| ||| ||| ||||||||||||||| | | |
|
|
| T |
6227 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
6128 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||| |||||||||||||| || || ||||| |||||| | |||||||| |||||||| || ||||| | || |||||| ||||| |||||| |||||||| |
|
|
| T |
6127 |
tatcgtgaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
6028 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
6027 |
gt |
6026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 18739561 - 18739260
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
18739561 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18739462 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
18739461 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18739362 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| |||| |||||||||||| |||||| |||||||| |
|
|
| T |
18739361 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
18739262 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
18739261 |
gt |
18739260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 18744525 - 18744224
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
18744525 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18744426 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
18744425 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18744326 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| |||| |||||||||||| |||||| |||||||| |
|
|
| T |
18744325 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
18744226 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
18744225 |
gt |
18744224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 18749486 - 18749185
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
||||| |||| ||| ||| ||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
18749486 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18749387 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| ||| ||| ||||||||||||||| | | |
|
|
| T |
18749386 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18749287 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| | || |||||| ||||| |||||| |||||||| |
|
|
| T |
18749286 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
18749187 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
18749186 |
gt |
18749185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 18723834 - 18723533
Alignment:
| Q |
11 |
gacatcatcagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttg |
110 |
Q |
| |
|
||||| |||| ||| ||| ||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |
|
|
| T |
18723834 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18723735 |
T |
|
| Q |
111 |
ttgcactnnnnnnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
210 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| ||| ||| ||||||||||||||| | | |
|
|
| T |
18723734 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18723635 |
T |
|
| Q |
211 |
tattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgat |
310 |
Q |
| |
|
||| ||||||||||||||||| || ||||| |||||| | |||||||| |||||||| || ||||| | || |||||| ||||| |||||| |||||||| |
|
|
| T |
18723634 |
tatagtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
18723535 |
T |
|
| Q |
311 |
gt |
312 |
Q |
| |
|
|| |
|
|
| T |
18723534 |
gt |
18723533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 18733034 - 18732996
Alignment:
| Q |
164 |
agttttagaaatgaagtgaaaatattatcagaaataaag |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18733034 |
agttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 294
Target Start/End: Complemental strand, 42977915 - 42977758
Alignment:
| Q |
137 |
gaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgtt |
236 |
Q |
| |
|
|||||||| ||| ||||| |||||| | ||| |||| |||||||| |||||||||| |||||||||| | ||||||||| ||||||||||||||||| | |
|
|
| T |
42977915 |
gaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgct |
42977816 |
T |
|
| Q |
237 |
tgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
|||| |||||| | |||||||| |||||||| || ||| |||||||||| |||||||| |
|
|
| T |
42977815 |
tgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
42977758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 48712540 - 48712417
Alignment:
| Q |
170 |
agaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgtttgcataaaagagttatgttttttatctatcagt |
269 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||| || | ||||||||| ||||||||||||||||| ||||| |||||| | || |||| |||||||| | |
|
|
| T |
48712540 |
agaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggattttgcttgcacaaaagaatcatattttcaatctatcaat |
48712442 |
T |
|
| Q |
270 |
atatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
| ||| |||||||||| |||||||| |
|
|
| T |
48712441 |
acatgaaaaaagaaagtttgttctc |
48712417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 13605480 - 13605436
Alignment:
| Q |
192 |
cagaaataaagcacagaaatattgtgaagctttatggattttgtt |
236 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13605480 |
cagaaacaaggcacagaaacattgtgaagctttatggattttgtt |
13605436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 16880275 - 16880339
Alignment:
| Q |
150 |
catctcttgatgaaagttttagaaatgaa-gtgaaaatattatcagaaataaagcacagaaatat |
213 |
Q |
| |
|
||||| |||||| ||||| ||||||||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
16880275 |
catcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcacataaatat |
16880339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 294
Target Start/End: Complemental strand, 41668989 - 41668832
Alignment:
| Q |
137 |
gaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgtt |
236 |
Q |
| |
|
|||||||| ||| ||||| |||||| ||||| |||| ||||||||||||||||| | |||||||||| | ||||||||| ||||||||||||||||| | |
|
|
| T |
41668989 |
gaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggattttgct |
41668890 |
T |
|
| Q |
237 |
tgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
|||| |||||| | |||||||| ||||||| || ||| |||||||||| |||||||| |
|
|
| T |
41668889 |
tgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctc |
41668832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 19250258 - 19250547
Alignment:
| Q |
22 |
agcaacaaaagactttgacattaaatattgcattggaaaaggagcatatgaaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactnnnn |
121 |
Q |
| |
|
||||||| || |||||||||||| ||||||||| | |||| ||||||||||||| |||||| | | ||||||| |||||||| |||| || | |
|
|
| T |
19250258 |
agcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttgtcgctttaaag |
19250357 |
T |
|
| Q |
122 |
nnncttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagc |
221 |
Q |
| |
|
|||| | ||| |||| ||| ||||| ||| |||||| ||||| |||| |||||||| |||||||||| | ||||| |||| ||||||||| |||| |
|
|
| T |
19250358 |
aaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaatattgttaagc |
19250457 |
T |
|
| Q |
222 |
tttatggattttgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctccgtcttgcatgatgatgt |
312 |
Q |
| |
|
|||||||||| || ||||| |||||| | |||||||| |||||||| || || |||||| |||||||||||| || ||| |||||||||| |
|
|
| T |
19250458 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgatgatgt |
19250547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 137 - 294
Target Start/End: Original strand, 1257781 - 1257938
Alignment:
| Q |
137 |
gaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgtt |
236 |
Q |
| |
|
|||||||| ||| ||| | |||||| ||||| |||| |||||||| |||||||||| |||||||||| | ||||||||| || ||||||| |||||||| |
|
|
| T |
1257781 |
gaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaaactttatgaattttgtt |
1257880 |
T |
|
| Q |
237 |
tgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
|||| |||||| | |||||||| |||||||| || ||| |||||||||| |||||||| |
|
|
| T |
1257881 |
tgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
1257938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 294
Target Start/End: Original strand, 31657983 - 31658144
Alignment:
| Q |
133 |
ctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattt |
232 |
Q |
| |
|
||||||| ||| ||| ||||| |||||| | ||| |||| |||||||| |||||||||| |||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
31658082 |
T |
|
| Q |
233 |
tgtttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
|| ||||| |||||| | |||||||| |||||||| || ||| |||||||||| |||||||| |
|
|
| T |
31658083 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
31658144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 39102428 - 39102272
Alignment:
| Q |
138 |
aagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgttt |
237 |
Q |
| |
|
||||||| ||| ||||| |||||| |||||||||| |||||||| |||||||||| |||||||||| | ||||||||| ||||||||||||||||| || |
|
|
| T |
39102428 |
aagcagatgtgtcatcttttgatgcgagttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgctt |
39102329 |
T |
|
| Q |
238 |
gcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
||| |||||| |||||||| || ||||| || ||| ||| |||||| |||||||| |
|
|
| T |
39102328 |
gcacaaaagaagcatgtttttaatatatcaatacatgaaaagagaaagtttgttctc |
39102272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 151 - 294
Target Start/End: Original strand, 36620589 - 36620732
Alignment:
| Q |
151 |
atctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatggattttgtttgcataaaagagtt |
250 |
Q |
| |
|
|||| |||||| ||||| |||| |||||||| |||||||||| |||||||||| | ||||||||| ||||||||||||||||| ||||| |||||| | |
|
|
| T |
36620589 |
atcttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatc |
36620688 |
T |
|
| Q |
251 |
atgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
|||||||| |||||||| || ||| ||| |||||| |||||||| |
|
|
| T |
36620689 |
atgtttttaatctatcaatacatgaaaagagaaagtttgttctc |
36620732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 294
Target Start/End: Complemental strand, 8873236 - 8873078
Alignment:
| Q |
137 |
gaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctttatgga-ttttgt |
235 |
Q |
| |
|
|||||||| ||| |||| |||||| ||||| |||| |||||||| |||||||| | |||||||||| | ||||||| | |||||||||||| ||||| |
|
|
| T |
8873236 |
gaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggatttttgc |
8873137 |
T |
|
| Q |
236 |
ttgcataaaagagttatgttttttatctatcagtatatggaaaaagaaagcttgttctc |
294 |
Q |
| |
|
||||| |||||| | |||||||| |||||||| || ||| |||||||||| |||||||| |
|
|
| T |
8873136 |
ttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
8873078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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