View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21685_high_32 (Length: 305)

Name: NF21685_high_32
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21685_high_32
NF21685_high_32
[»] chr2 (12 HSPs)
chr2 (16-135)||(4730682-4730801)
chr2 (18-129)||(35243106-35243218)
chr2 (121-182)||(4730610-4730671)
chr2 (68-118)||(12419537-12419587)
chr2 (68-118)||(12431597-12431647)
chr2 (66-129)||(20105337-20105402)
chr2 (92-129)||(39711724-39711761)
chr2 (67-115)||(39228901-39228949)
chr2 (67-118)||(5136187-5136238)
chr2 (68-115)||(9848112-9848159)
chr2 (67-118)||(18482108-18482159)
chr2 (79-112)||(38002026-38002059)
[»] scaffold0174 (2 HSPs)
scaffold0174 (16-135)||(30562-30681)
scaffold0174 (120-182)||(30490-30552)
[»] chr1 (6 HSPs)
chr1 (16-135)||(2688393-2688512)
chr1 (118-167)||(2688520-2688569)
chr1 (68-115)||(48563257-48563304)
chr1 (68-115)||(50959523-50959570)
chr1 (79-109)||(19757765-19757795)
chr1 (85-115)||(29013825-29013855)
[»] chr7 (5 HSPs)
chr7 (70-118)||(10623350-10623398)
chr7 (62-115)||(10019743-10019796)
chr7 (81-122)||(28302166-28302207)
chr7 (75-112)||(5907018-5907055)
chr7 (79-115)||(27900348-27900384)
[»] chr4 (3 HSPs)
chr4 (89-141)||(21481176-21481228)
chr4 (67-115)||(1745438-1745486)
chr4 (80-115)||(38011672-38011707)
[»] chr8 (3 HSPs)
chr8 (68-113)||(1029736-1029781)
chr8 (68-115)||(41566184-41566231)
chr8 (67-115)||(11954595-11954643)
[»] chr5 (1 HSPs)
chr5 (62-129)||(24099420-24099486)
[»] chr3 (2 HSPs)
chr3 (67-133)||(28159065-28159130)
chr3 (79-133)||(28180530-28180583)
[»] chr6 (3 HSPs)
chr6 (79-115)||(29032701-29032737)
chr6 (68-115)||(8210013-8210060)
chr6 (87-141)||(17459206-17459258)
[»] scaffold0756 (1 HSPs)
scaffold0756 (84-115)||(4094-4125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (68-133)||(353236-353297)


Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 4730801 - 4730682
Alignment:
Q  16 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4730801 atcatcagagagtcaagcgtacatgccaccaaacacaacaagttacaatctgacgcgttagaactcagatcgtgggatgagtccaatacgttagtaacca 4730702  T
Q  116 aacagaccctttcgagttta 135  Q
    |||||||||||||| |||||    
T  4730701 aacagaccctttcgggttta 4730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 35243218 - 35243106
Alignment:
Q  18 catcagagagtc-aagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaa 116  Q
    |||||||||||| ||||  ||| ||||||||||||||||||||| |||| || | |||| || |||||||| |||||||||||| |||| ||||||||||    
T  35243218 catcagagagtccaagcagacatgccaccaaacacaacaagttacaatctgatgtgttacatatcagatcgagggatgagtccattacgctagtaaccaa 35243119  T
Q  117 acagaccctttcg 129  Q
    |||||||||||||    
T  35243118 acagaccctttcg 35243106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 4730671 - 4730610
Alignment:
Q  121 accctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 182  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  4730671 accctttcgggattatgaaaccaaagcaaaaggtcaagtctgcacccatcaatctcagctct 4730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 12419537 - 12419587
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 118  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12419537 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12419587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 12431597 - 12431647
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 118  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12431597 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 20105402 - 20105337
Alignment:
Q  66 cgacgcgttagatctcagatcgtgggatgagtccaatacgtt--agtaaccaaacagaccctttcg 129  Q
    |||||||| ||| ||||||||| | |||||||||||||||||  ||||||||| ||||||||||||    
T  20105402 cgacgcgtaagaactcagatcgagtgatgagtccaatacgttaaagtaaccaatcagaccctttcg 20105337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 39711724 - 39711761
Alignment:
Q  92 atgagtccaatacgttagtaaccaaacagaccctttcg 129  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39711724 atgagttcaatacgttagtaaccaaacagaccctttcg 39711761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 39228949 - 39228901
Alignment:
Q  67 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||||||||    
T  39228949 gacgcgtaagaactcagatcgagggatgagtcgaatacgttagtaacca 39228901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 5136238 - 5136187
Alignment:
Q  67 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 118  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| || ||||||    
T  5136238 gacgcgtaagaactcagatcgagggatgagtccaatacgttaatagccaaac 5136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 9848159 - 9848112
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 9848112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 18482108 - 18482159
Alignment:
Q  67 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 118  Q
    ||||||| ||| ||||||||| ||||||||||||||| |||| |||||||||    
T  18482108 gacgcgtaagaactcagatcgagggatgagtccaatatgttaataaccaaac 18482159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 38002059 - 38002026
Alignment:
Q  79 ctcagatcgtgggatgagtccaatacgttagtaa 112  Q
    ||||||||| ||||||||||||||||||||||||    
T  38002059 ctcagatcgagggatgagtccaatacgttagtaa 38002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 30681 - 30562
Alignment:
Q  16 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  30681 atcatcagagagtcaagcctgcacgcaaccaaacacaacaagttacaatctgacgcgttagaactcatatcgtgggatgagtccaatacgttagtaacca 30582  T
Q  116 aacagaccctttcgagttta 135  Q
    |||||||||||||| |||||    
T  30581 aacagaccctttcgggttta 30562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 30552 - 30490
Alignment:
Q  120 gaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 182  Q
    |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  30552 gaccctttcgggtttatgaaaccaacgcaaaaggtcaagtctgcacccaccaatctcagctct 30490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 2688393 - 2688512
Alignment:
Q  16 atcatcagagagtcaagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||| ||||||||||  |||| |||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  2688393 atcatcaaagagtcaagcacacacaccaccaaacacaacaagttacaatctgatgcgttagaactcagatcgtgggatgagtccaatacgttagtaacca 2688492  T
Q  116 aacagaccctttcgagttta 135  Q
    ||||||| |||||| |||||    
T  2688493 aacagactctttcgggttta 2688512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 2688520 - 2688569
Alignment:
Q  118 cagaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcaccc 167  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2688520 cagaccctttcgggtttatgaaaccaaagcaaaaggtcaagactgcaccc 2688569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 48563304 - 48563257
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||| ||| || |||||||||||||||||||||| |||||||||||    
T  48563304 acgcgtaagaacttagatcgtgggatgagtccaatatgttagtaacca 48563257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 50959523 - 50959570
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 50959570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 109
Target Start/End: Complemental strand, 19757795 - 19757765
Alignment:
Q  79 ctcagatcgtgggatgagtccaatacgttag 109  Q
    |||||||||||||||||||||||||||||||    
T  19757795 ctcagatcgtgggatgagtccaatacgttag 19757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 29013825 - 29013855
Alignment:
Q  85 tcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||||||||||||||||||||||||||||    
T  29013825 tcgtgggatgagtccaatacgttagtaacca 29013855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 10623398 - 10623350
Alignment:
Q  70 gcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 118  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10623398 gcgttagaactcagatcgagggatgagtccaatacgttagtaaccaaac 10623350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 10019743 - 10019796
Alignment:
Q  62 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||| ||||||| ||| |||| |||| |||||||||||||||||||||||||||    
T  10019743 aatcagacgcgtaagaactcaaatcgagggatgagtccaatacgttagtaacca 10019796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 28302166 - 28302207
Alignment:
Q  81 cagatcgtgggatgagtccaatacgttagtaaccaaacagac 122  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  28302166 cagatcgagggatgagtccaatacgttagtaaccaaatagac 28302207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 5907055 - 5907018
Alignment:
Q  75 agatctcagatcgtgggatgagtccaatacgttagtaa 112  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5907055 agatctcatatcgagggatgagtccaatacgttagtaa 5907018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 27900348 - 27900384
Alignment:
Q  79 ctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  27900348 ctcagatcgagggatgagtccaatatgttagtaacca 27900384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 21481176 - 21481228
Alignment:
Q  89 gggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 141  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  21481176 gggatgagtccaattcgtgagtaaccaaacagaccctttcgagtttttgaaac 21481228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 1745486 - 1745438
Alignment:
Q  67 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||||||    
T  1745486 gacgcgtaagaactcagattgagggatgagtccaatacgttagtaacca 1745438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 38011672 - 38011707
Alignment:
Q  80 tcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||||| |||||||||||||||||||||||||||    
T  38011672 tcagatcgagggatgagtccaatacgttagtaacca 38011707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 1029736 - 1029781
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaac 113  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaac 1029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 41566231 - 41566184
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  41566231 acgcgtaagaactcagatcgtgggatgagtctaatacgttagtaacca 41566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 11954595 - 11954643
Alignment:
Q  67 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||| ||| ||||||||  |||||||||||||||||||| ||||||    
T  11954595 gacgcgtaagaactcagatccagggatgagtccaatacgttaataacca 11954643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 24099486 - 24099420
Alignment:
Q  62 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcg 129  Q
    |||||||||||| | | ||||||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  24099486 aatccgacgcgtaaaaactcagatcgagggatgagttcaatacgttaataacc-aacagaccctttcg 24099420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 28159065 - 28159130
Alignment:
Q  67 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 133  Q
    |||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  28159065 gacgtgtttgatctcagatcgagggatgagttcaatatgttagtaaccaaaca-acccttttgagtt 28159130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 28180530 - 28180583
Alignment:
Q  79 ctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 133  Q
    ||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  28180530 ctcagattgagggatgagttcaatacgttagtaaccaaaca-acccttttgagtt 28180583  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 29032737 - 29032701
Alignment:
Q  79 ctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||||| |||||||||||||||||||||||||||    
T  29032737 ctcagatcgagggatgagtccaatacgttagtaacca 29032701  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 8210060 - 8210013
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 115  Q
    |||||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  8210060 acgcgtaagaactcagatcgagggatgagtccaataagttagtaacca 8210013  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 17459206 - 17459258
Alignment:
Q  87 gtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 141  Q
    |||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||    
T  17459206 gtgggatgagtccaatacgttagtaatc--acagaccctttcgggtttttgaaac 17459258  T

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Target: scaffold0756 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 4125 - 4094
Alignment:
Q  84 atcgtgggatgagtccaatacgttagtaacca 115  Q
    ||||||||||||||||||||||||||||||||    
T  4125 atcgtgggatgagtccaatacgttagtaacca 4094  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 353236 - 353297
Alignment:
Q  68 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 133  Q
    |||||| ||| ||||||||| ||||||||||||||| || ||||||    ||||||||||||||||    
T  353236 acgcgtaagaactcagatcgagggatgagtccaatatgtcagtaac----cagaccctttcgagtt 353297  T

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