View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_high_5 (Length: 462)
Name: NF21685_high_5
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_high_5 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 439
Target Start/End: Complemental strand, 9297958 - 9297550
Alignment:
| Q |
30 |
aaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttatatatgtgaaaaaattgtatagcctcaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9297958 |
aaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttatatatgtgaaaaaatagtatagcctcaat |
9297859 |
T |
|
| Q |
130 |
gcaatgtatatatgcctaagtgacacaattttaaattgcatagtttagattggatataaaatatgatctatatcttttgttttacttttgtaactcctct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9297858 |
gcaatgtatatatgcctaagtgacacaattttaaattgcatagtttagattggatataaagtatgatctatatcttttgttttacttttgtaactcctct |
9297759 |
T |
|
| Q |
230 |
ctcacacaatgaaacatctctgcttaaatcaatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttccgattgggtatggat |
329 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9297758 |
ctcacacaat-aaacatctctgcttaaatcaatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttcagattgggtatggat |
9297660 |
T |
|
| Q |
330 |
tagccgataattacctaaaaatatagtttgagtttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaag |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9297659 |
tagccgataattacctaaaaatatagtttgagtttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaag |
9297560 |
T |
|
| Q |
430 |
aatttgatga |
439 |
Q |
| |
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|||||||||| |
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| T |
9297559 |
aatttgatga |
9297550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 368
Target Start/End: Complemental strand, 9286628 - 9286290
Alignment:
| Q |
30 |
aaaaggaggaggcggaacaagccaaatagatagacatatagtaagcaactatcttgatgttccactctttatatatgtga----aaaaattgtatagcct |
125 |
Q |
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| T |
9286628 |
aaaaggaggaggcggaacaagccaacttgatagacatt--gtaagcaactattttgatgttccactttttatatatgtgagagaaaaaatagtatagcct |
9286531 |
T |
|
| Q |
126 |
caatgcaatgtatatatgcctaagtgacacaattttaaattgcatagtttagattggatataaaatatgatctatatcttttgttttacttttgtaactc |
225 |
Q |
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||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
9286530 |
caatgtaatgtataaatgcc-aagtgacacaattttaaaatgcatagtttagattggatataaagtatgatctatatcttttgttttacttt-gtaactc |
9286433 |
T |
|
| Q |
226 |
ctctctcacacaatgaaacatctctgcttaaatcaatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttccgattgggtat |
325 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||| |
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| T |
9286432 |
ctctctcacacaacgaaacatctctgctgaaatcaatttgaaagaaccttaataggtaattcttagtttgaaatttatgtatatgtttcagattgggtat |
9286333 |
T |
|
| Q |
326 |
ggattagccgataattacctaaaaatatagtttgagtttttga |
368 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
9286332 |
ggattagccgataattacctagaaatatagtttgagtgtttga |
9286290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 9291072 - 9290993
Alignment:
| Q |
362 |
tttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgatg |
441 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || || |||||||||||||| |
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| T |
9291072 |
tttttgaattgtatgtctgagatcacacttatccctcttgtgtaaaaatctgacattagggtatgtagaatttgatgatg |
9290993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 441
Target Start/End: Original strand, 9062252 - 9062327
Alignment:
| Q |
363 |
ttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgatg |
441 |
Q |
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| T |
9062252 |
ttttgagttgtaagtctgagatcacacttatcc---ttgtgtaaaaatctcacattaaggtgtgaagaatttgatgatg |
9062327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 9315175 - 9315103
Alignment:
| Q |
369 |
attgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgatg |
441 |
Q |
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| T |
9315175 |
attgtatgtctgagatcacacttatccctcttttgtaaaaatatgacattagggtatttagaatttgatgatg |
9315103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 9318658 - 9318619
Alignment:
| Q |
363 |
ttttgaattgtatgtctgagatcacagttatccctcttgt |
402 |
Q |
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| T |
9318658 |
ttttgaattgtatgtctgagatcacatttatccctcttgt |
9318619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 7117095 - 7117160
Alignment:
| Q |
375 |
tgtctgagatcacagttatccctcttgtgtaaaaatctcacattagagtgtgaagaatttgatgatg |
441 |
Q |
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|||| ||||||||| ||||||| | | ||||||||||||||||||| ||||||||||||||||||| |
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| T |
7117095 |
tgtccgagatcacatttatcccacct-tgtaaaaatctcacattaggatgtgaagaatttgatgatg |
7117160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 9286295 - 9286262
Alignment:
| Q |
355 |
gtttgagtttttgaattgtatgtctgagatcaca |
388 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
9286295 |
gtttgagtttttgaattgtatctctgagatcaca |
9286262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 10334796 - 10334763
Alignment:
| Q |
375 |
tgtctgagatcacagttatccctcttgtgtaaaa |
408 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
10334796 |
tgtctaagatcacagttatccctcttgtgtaaaa |
10334763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 66 - 358
Target Start/End: Complemental strand, 7724106 - 7723810
Alignment:
| Q |
66 |
tatagtaagcaactatcttgatgttccactctttatatatgtgaaaaaa-ttgtatagcctcaatgcaatg-tatatatgcctaagtgacacaattttaa |
163 |
Q |
| |
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|||||||||||||| | | |||||| | || |||||| ||||||||||| |||||| ||||||||| || |||||||| ||||||||| |||||||| |
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| T |
7724106 |
tatagtaagcaactttgtcgatgtttccctttttatacatgtgaaaaaaattgtattgcctcaatgttgtgctatatatga-taagtgacaaaattttaa |
7724008 |
T |
|
| Q |
164 |
attgcatagtttagattggatataaaatatgatctatatcttttg---ttttacttttgtaactcctctctcaca-caatgaaacatctctgcttaaatc |
259 |
Q |
| |
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| || || |||||||| ||||||||| |||||||||||| | | | |||||||||||||||| |||||||||| || ||||||| ||| |||||||| |
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| T |
7724007 |
aatgtattgtttagatcggatataaagtatgatctatatatctcgtgtttttacttttgtaacttctctctcacattaacgaaacatatctacttaaatc |
7723908 |
T |
|
| Q |
260 |
aatttgaaagaacctcaataggtaattcttagtttcaattttatgtatatgtttccgattgggtatggattagccgataattacctaaaaatatagttt |
358 |
Q |
| |
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||||||||||||||| || || | | | |||| | ||| ||||||||||| ||| | || | |||||||| | |||||| ||||||||||||||||| |
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| T |
7723907 |
aatttgaaagaaccttaaaagtttagttttagctacaaatttatgtatattattcag-tttgttatggattggttgataataacctaaaaatatagttt |
7723810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 1677 - 1638
Alignment:
| Q |
363 |
ttttgaattgtatgtctgagatcacagttatccctcttgt |
402 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||| |
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| T |
1677 |
ttttgaatagtatgtctgagatcacacttatccctcttgt |
1638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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