View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21685_low_1 (Length: 391)
Name: NF21685_low_1
Description: NF21685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21685_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 10078537 - 10078921
Alignment:
| Q |
1 |
tcatcatcaggcgcaacagtctgaagaacaattacagcagcaacagcagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaagctgct |
100 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078537 |
tcataatcaggcgcaacagtctgaagatcaattacagcagcaacaacagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaagctgct |
10078636 |
T |
|
| Q |
101 |
gctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggacttctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078637 |
gctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggacttctcc |
10078736 |
T |
|
| Q |
201 |
accagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttcatgcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078737 |
accagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttcatgcag |
10078836 |
T |
|
| Q |
301 |
tacagtgccacaggcacaaccaaactcgtccccttttcattcaccaacaccgtcctcatctaacaacaacccacaaacttctcac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10078837 |
tacagtgccacaggcacaaccaaactcgtccccttttcattcaccaacaccgtcctcatctaacaacaacccgcaaacttctcac |
10078921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 65 - 378
Target Start/End: Complemental strand, 40776318 - 40776005
Alignment:
| Q |
65 |
aactcaaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctg |
164 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||| | |||||| | |||| | ||||||| |||| |||||||||| |||||| || || || | |
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| T |
40776318 |
aactcaaatggcgatcaaaacccagtgcaagctgcttccatgcaaattgcttccagcaatggtatggttagtgtaaatagttctgtcaactcggcgtccg |
40776219 |
T |
|
| Q |
165 |
catcgaccaccacaagcaccattgttggacttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggagg |
264 |
Q |
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|||| || ||||||||||| |||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40776218 |
catcaacaaccacaagcactattgttggacttctccaccaaaactctgtgaattctagaca---aaattcaatgaacaatgcaagcagtccatatggagg |
40776122 |
T |
|
| Q |
265 |
tagttcagctcatattccatccccaggttcatgcagtacagtgccacaggcacaaccaaactcgtccccttttcattcacca---acaccgtcctcatct |
361 |
Q |
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|| ||| | ||| ||||||||||| ||||| | |||||| ||||||||||| || |||||||| ||||||||||| |||||| ||||| ||||||||| |
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| T |
40776121 |
taattctgttcagattccatcccctggttcctccagtactgtgccacaggcccagccaaactcatccccttttcagtcaccacctacaccatcctcatct |
40776022 |
T |
|
| Q |
362 |
aacaacaacccacaaac |
378 |
Q |
| |
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|| ||| ||||||||| |
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|
| T |
40776021 |
aataaccccccacaaac |
40776005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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