View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21687_high_1 (Length: 435)
Name: NF21687_high_1
Description: NF21687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21687_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 20632913 - 20633323
Alignment:
| Q |
23 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632913 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
20633012 |
T |
|
| Q |
123 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacatttagagaaacactaaagttatgcagaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633013 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacatttagagaaacactaaagttatgcagaa |
20633112 |
T |
|
| Q |
223 |
gagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaatgaaggcgaatgaatttcggaccgga |
322 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20633113 |
gagtgaagttaccggcagtgacagataagaaagcttttgagatgttgaagtccaaataagaaaaagggtagaaatgaaggcgaatgaatttcggaccgga |
20633212 |
T |
|
| Q |
323 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagtgcttttgct |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633213 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagtgcttttgct |
20633312 |
T |
|
| Q |
423 |
gttaaggactt |
433 |
Q |
| |
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||||||||||| |
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| T |
20633313 |
gttaaggactt |
20633323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 23 - 435
Target Start/End: Original strand, 20649012 - 20649421
Alignment:
| Q |
23 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20649012 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
20649111 |
T |
|
| Q |
123 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacatttagagaaacactaaagttatgcagaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649112 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacatttagagaaacactaaagttatgcagaa |
20649211 |
T |
|
| Q |
223 |
gagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaatgaaggcgaatgaatttcggaccgga |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20649212 |
gagtgaagttaccagcagtgacagataagaaagcttttgagatattgaaattcaaataagaaaaagggtagaaatgaaggcgaatgaatttcggaccgga |
20649311 |
T |
|
| Q |
323 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagtgcttttgct |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
20649312 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattgaagatttgaag---gtgcttttgct |
20649408 |
T |
|
| Q |
423 |
gttaaggacttgt |
435 |
Q |
| |
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||||||||||||| |
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|
| T |
20649409 |
gttaaggacttgt |
20649421 |
T |
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