View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21687_high_20 (Length: 330)
Name: NF21687_high_20
Description: NF21687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21687_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 29405152 - 29404860
Alignment:
| Q |
21 |
gacacgttggtggaattcttgcgtgatagttgtggtcgtagatttcctccgccagaattctcaggggaatctgccgtgaaccgagttgagctcccacgag |
120 |
Q |
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| T |
29405152 |
gacacgttggtggaattcttgcgtgatagttgtggtcgtagatttcctccgccagaattctcagaggaatctgccgtgaaccgagttgagctcccacgag |
29405053 |
T |
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| Q |
121 |
tgaattttggcctgctagctggagcattggattcatctgatggatcgaggtcatctacttggtgtgttgacatgtctgagtcgtaatgagtttggactcg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29405052 |
tgaattttggcctgctagctggagcattggattcatctgatggatcgagctcatctacttggtgtgttgacatgtctgagtcgtaatgagtttggactcg |
29404953 |
T |
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| Q |
221 |
aactgaattgcgacgaccgaattgtgaaaagcttctgctgtttggattttggatagggatgtctgacgttggaatgggaattgatgatgtcca |
313 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
29404952 |
aactgagttgcgacgaccgaattgtgaaaagcttctgctgtttggattttggatagggatgtcggatgttggaatgggaattgatgatgtcca |
29404860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 19911822 - 19911952
Alignment:
| Q |
186 |
gttgacatgtctgagtc---gtaatgagtttggactcgaactgaattgcgacgaccgaattgtgaaaagcttctgctgtttggattttggatagggatgt |
282 |
Q |
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||||||||||||||||| || |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||| || || |||||||||||||| || | |
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| T |
19911822 |
gttgacatgtctgagtcatcgtggtgagtttggattcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatat |
19911921 |
T |
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| Q |
283 |
ctgacgttggaatgggaattgatgatgtcca |
313 |
Q |
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|||| |||||||| |||| | ||||||||| |
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| T |
19911922 |
ctgaagttggaatatgaatcgttgatgtcca |
19911952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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