View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21687_high_22 (Length: 322)

Name: NF21687_high_22
Description: NF21687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21687_high_22
NF21687_high_22
[»] chr3 (39 HSPs)
chr3 (1-297)||(27050118-27050414)
chr3 (76-175)||(8022706-8022805)
chr3 (76-157)||(8603127-8603209)
chr3 (124-192)||(13438556-13438624)
chr3 (96-203)||(17385325-17385433)
chr3 (91-166)||(25105581-25105657)
chr3 (76-158)||(15551132-15551215)
chr3 (94-203)||(25486993-25487103)
chr3 (103-203)||(6808896-6808997)
chr3 (210-297)||(17759926-17760011)
chr3 (210-297)||(19061246-19061331)
chr3 (112-203)||(19978350-19978442)
chr3 (91-174)||(8853538-8853621)
chr3 (3-42)||(14259482-14259521)
chr3 (242-297)||(21168213-21168268)
chr3 (80-158)||(31413915-31413994)
chr3 (208-297)||(43429033-43429119)
chr3 (121-167)||(11401078-11401124)
chr3 (1-38)||(3294812-3294849)
chr3 (82-158)||(17760071-17760148)
chr3 (82-158)||(19061391-19061468)
chr3 (241-297)||(17320073-17320129)
chr3 (121-165)||(54040205-54040249)
chr3 (121-165)||(54049492-54049536)
chr3 (121-192)||(2548032-2548106)
chr3 (106-173)||(16220345-16220412)
chr3 (76-166)||(17391793-17391884)
chr3 (210-295)||(25105463-25105545)
chr3 (4-42)||(11834193-11834231)
chr3 (121-159)||(21764251-21764289)
chr3 (210-298)||(34558486-34558571)
chr3 (210-297)||(14817192-14817276)
chr3 (210-281)||(15549144-15549212)
chr3 (241-297)||(4163680-4163736)
chr3 (2-42)||(8897809-8897849)
chr3 (128-192)||(12254387-12254451)
chr3 (241-297)||(18968736-18968792)
chr3 (1-33)||(20419450-20419482)
chr3 (1-33)||(24901349-24901381)
[»] chr8 (23 HSPs)
chr8 (106-297)||(18032840-18033030)
chr8 (76-175)||(24623264-24623363)
chr8 (80-166)||(31195903-31195990)
chr8 (99-166)||(25261831-25261898)
chr8 (76-158)||(17500471-17500554)
chr8 (76-168)||(20177656-20177749)
chr8 (76-168)||(20222383-20222476)
chr8 (82-158)||(25608601-25608678)
chr8 (241-297)||(19333117-19333173)
chr8 (76-158)||(17265361-17265444)
chr8 (106-173)||(23543813-23543880)
chr8 (76-140)||(23217484-23217549)
chr8 (210-297)||(24266618-24266702)
chr8 (210-297)||(29296515-29296599)
chr8 (241-297)||(24554072-24554128)
chr8 (77-158)||(16041171-16041253)
chr8 (77-158)||(16042847-16042929)
chr8 (3-41)||(17624574-17624612)
chr8 (77-158)||(18610714-18610796)
chr8 (210-297)||(7468863-7468947)
chr8 (210-281)||(17265504-17265572)
chr8 (210-297)||(26010062-26010146)
chr8 (1-33)||(18119871-18119903)
[»] scaffold0282 (1 HSPs)
scaffold0282 (121-297)||(20462-20641)
[»] chr6 (27 HSPs)
chr6 (76-297)||(5485830-5486050)
chr6 (78-192)||(12974984-12975098)
chr6 (210-297)||(4228778-4228863)
chr6 (94-221)||(24217325-24217453)
chr6 (80-158)||(22595128-22595207)
chr6 (76-158)||(31162523-31162606)
chr6 (2-48)||(9520144-9520190)
chr6 (210-297)||(11374343-11374428)
chr6 (80-158)||(16374838-16374917)
chr6 (212-297)||(4173169-4173252)
chr6 (106-176)||(19728988-19729058)
chr6 (91-158)||(17084987-17085055)
chr6 (2-42)||(17821626-17821666)
chr6 (210-297)||(29162002-29162087)
chr6 (76-165)||(4173307-4173397)
chr6 (210-297)||(29604179-29604263)
chr6 (241-297)||(15006147-15006203)
chr6 (210-297)||(17375244-17375329)
chr6 (76-158)||(4228923-4229006)
chr6 (76-157)||(11374489-11374571)
chr6 (77-158)||(19627784-19627866)
chr6 (77-158)||(35010948-35011030)
chr6 (91-168)||(1560372-1560449)
chr6 (121-166)||(12466177-12466222)
chr6 (210-297)||(32350692-32350776)
chr6 (210-276)||(21621753-21621816)
chr6 (121-157)||(29162148-29162184)
[»] scaffold0205 (2 HSPs)
scaffold0205 (75-259)||(4045-4230)
scaffold0205 (210-291)||(3978-4059)
[»] chr7 (28 HSPs)
chr7 (122-297)||(8325315-8325489)
chr7 (77-237)||(26427074-26427235)
chr7 (110-241)||(6461336-6461468)
chr7 (76-174)||(9128915-9129014)
chr7 (210-297)||(45148180-45148265)
chr7 (76-168)||(39293365-39293458)
chr7 (76-165)||(14278125-14278215)
chr7 (93-157)||(4072219-4072284)
chr7 (47-167)||(14974185-14974305)
chr7 (47-167)||(15403661-15403781)
chr7 (76-168)||(44306895-44306988)
chr7 (76-166)||(16065009-16065101)
chr7 (210-296)||(16207030-16207114)
chr7 (122-192)||(3172157-3172227)
chr7 (106-192)||(16436378-16436464)
chr7 (210-297)||(14939398-14939482)
chr7 (210-297)||(15366991-15367075)
chr7 (110-166)||(6210571-6210627)
chr7 (242-297)||(16382178-16382233)
chr7 (76-158)||(45148036-45148119)
chr7 (77-158)||(14252968-14253050)
chr7 (121-158)||(12246473-12246510)
chr7 (75-203)||(14280024-14280151)
chr7 (91-168)||(15755926-15756003)
chr7 (123-203)||(17151024-17151105)
chr7 (241-297)||(4437495-4437551)
chr7 (241-297)||(4444896-4444952)
chr7 (210-276)||(17225414-17225477)
[»] chr4 (18 HSPs)
chr4 (121-269)||(19076290-19076440)
chr4 (94-241)||(18420441-18420589)
chr4 (53-174)||(14616440-14616563)
chr4 (202-291)||(14617746-14617835)
chr4 (121-295)||(10115866-10116046)
chr4 (91-158)||(40902370-40902438)
chr4 (80-158)||(41918420-41918499)
chr4 (75-203)||(13933258-13933386)
chr4 (106-174)||(18667793-18667861)
chr4 (94-188)||(20847372-20847467)
chr4 (106-192)||(18713447-18713533)
chr4 (2-42)||(12452322-12452362)
chr4 (211-297)||(12732764-12732847)
chr4 (91-158)||(15215511-15215579)
chr4 (77-158)||(19699238-19699320)
chr4 (77-158)||(19709823-19709905)
chr4 (210-297)||(38763399-38763483)
chr4 (243-296)||(42707399-42707452)
[»] chr2 (15 HSPs)
chr2 (91-269)||(34135790-34135972)
chr2 (76-203)||(22576492-22576619)
chr2 (75-167)||(23157865-23157959)
chr2 (75-167)||(23569122-23569216)
chr2 (210-297)||(20271983-20272068)
chr2 (76-149)||(21652761-21652835)
chr2 (76-158)||(45619705-45619788)
chr2 (80-158)||(22331123-22331202)
chr2 (210-297)||(25132799-25132883)
chr2 (77-158)||(7513687-7513769)
chr2 (77-158)||(42180034-42180116)
chr2 (210-297)||(19660950-19661034)
chr2 (3-52)||(34136048-34136096)
chr2 (210-297)||(6093442-6093527)
chr2 (71-167)||(18994713-18994808)
[»] chr5 (16 HSPs)
chr5 (94-240)||(37278041-37278188)
chr5 (94-219)||(37275770-37275896)
chr5 (99-192)||(25340907-25341001)
chr5 (82-165)||(14343506-14343590)
chr5 (76-158)||(11765058-11765141)
chr5 (91-165)||(16837007-16837082)
chr5 (106-167)||(19318120-19318181)
chr5 (236-297)||(21108171-21108232)
chr5 (210-297)||(24082727-24082811)
chr5 (242-297)||(5622926-5622981)
chr5 (210-297)||(26561284-26561368)
chr5 (210-297)||(29912670-29912754)
chr5 (77-158)||(34937905-34937987)
chr5 (241-297)||(6455319-6455375)
chr5 (71-174)||(19266830-19266931)
chr5 (2-42)||(22949909-22949949)
[»] scaffold0333 (1 HSPs)
scaffold0333 (198-296)||(1483-1581)
[»] scaffold0058 (1 HSPs)
scaffold0058 (110-290)||(79315-79493)
[»] scaffold0231 (1 HSPs)
scaffold0231 (77-158)||(14593-14675)
[»] scaffold0317 (2 HSPs)
scaffold0317 (76-166)||(15508-15599)
scaffold0317 (210-294)||(15390-15472)
[»] scaffold0005 (2 HSPs)
scaffold0005 (53-174)||(200814-200937)
scaffold0005 (202-291)||(199542-199631)
[»] scaffold0174 (1 HSPs)
scaffold0174 (210-293)||(21582-21663)
[»] chr1 (5 HSPs)
chr1 (210-297)||(33395936-33396021)
chr1 (106-165)||(21199238-21199297)
chr1 (77-158)||(20252652-20252734)
chr1 (121-158)||(33395839-33395876)
chr1 (210-276)||(17022185-17022248)
[»] scaffold0468 (1 HSPs)
scaffold0468 (76-155)||(12630-12710)
[»] scaffold0115 (1 HSPs)
scaffold0115 (80-158)||(20176-20255)
[»] scaffold0013 (2 HSPs)
scaffold0013 (76-158)||(10997-11080)
scaffold0013 (210-297)||(10853-10937)
[»] scaffold0186 (1 HSPs)
scaffold0186 (51-166)||(11460-11577)
[»] scaffold0175 (1 HSPs)
scaffold0175 (210-297)||(6650-6734)
[»] scaffold0090 (1 HSPs)
scaffold0090 (76-168)||(36416-36509)
[»] scaffold0024 (1 HSPs)
scaffold0024 (99-168)||(101105-101174)
[»] scaffold0017 (2 HSPs)
scaffold0017 (76-167)||(11080-11172)
scaffold0017 (210-297)||(11202-11287)
[»] scaffold0508 (1 HSPs)
scaffold0508 (108-175)||(5836-5903)
[»] scaffold0003 (1 HSPs)
scaffold0003 (106-192)||(26008-26094)
[»] scaffold1204 (1 HSPs)
scaffold1204 (210-297)||(1704-1790)
[»] scaffold0357 (1 HSPs)
scaffold0357 (210-297)||(6351-6435)
[»] scaffold0219 (1 HSPs)
scaffold0219 (210-297)||(25435-25519)
[»] scaffold0107 (1 HSPs)
scaffold0107 (210-297)||(12056-12140)
[»] scaffold0028 (1 HSPs)
scaffold0028 (210-297)||(63956-64040)
[»] scaffold0396 (1 HSPs)
scaffold0396 (80-158)||(171-250)
[»] scaffold0138 (3 HSPs)
scaffold0138 (77-158)||(26760-26842)
scaffold0138 (121-158)||(27820-27857)
scaffold0138 (121-158)||(39816-39853)
[»] scaffold0009 (2 HSPs)
scaffold0009 (121-167)||(256037-256083)
scaffold0009 (210-276)||(68120-68183)
[»] scaffold0253 (2 HSPs)
scaffold0253 (210-297)||(9968-10052)
scaffold0253 (210-297)||(19393-19477)
[»] scaffold0047 (1 HSPs)
scaffold0047 (210-297)||(1565-1649)
[»] scaffold0032 (1 HSPs)
scaffold0032 (210-297)||(106102-106186)
[»] scaffold0010 (1 HSPs)
scaffold0010 (210-276)||(29724-29787)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 27050118 - 27050414
Alignment:
Q  1 tttaaaatcaccaagtgtacaagtatcacaaaaaataacaaaacatcaacaatcaccaaggtttaccaatcacgtattcaccaagtcagttattcaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  27050118 tttaaaatcaccaagtgtacaagtatcacaaaaaataacaaaacatcaacaatcaccaaggttcaccaatcacgtattcaccaagtcaattattcaatta 27050217  T
Q  101 tgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgtattgaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27050218 tgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccgaaaataatcttaccgtattgaatc 27050317  T
Q  201 cacacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||    
T  27050318 cacacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaagtacacctctttttacatttctcatatgacttaatatgactatgatg 27050414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 8022706 - 8022805
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattcc 175  Q
    ||||||| |||||  ||||||||||||| | |||||||||| |||  ||| |||||||||||||| | | |||||||||||||| |||||||||||||||    
T  8022706 attcacctagtcacatattcaattatgatatgactcaccaaataatgaattcatgcaatgttctagaatcttctagatgcatgtggtaccattggattcc 8022805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 8603127 - 8603209
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcat 157  Q
    ||||| ||||||| |||||||||| |||||||||||| ||||||  |||||||||||||||||||| ||| ||||||||||||    
T  8603127 attcaacaagtcacttattcaattgtgacacgactcatcaactattcaaatgcatgcaatgttctagactcttctagatgcat 8603209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 13438556 - 13438624
Alignment:
Q  124 atgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgt 192  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||| |||||||| | ||||| |||||||    
T  13438556 atgcatgcaatgttctagactcttctagatgcatgtggtaccataggattccagagataattttaccgt 13438624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 17385325 - 17385433
Alignment:
Q  96 aattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtac-cattggattccaaaaataatcttaccgtat 194  Q
    |||||||||||   ||||||| || |||||||||||||||||||| ||| |||||||||||||| ||||  ||||||||    | |||||||||||| ||    
T  17385325 aattatgacacatttcaccaattatcaaatgcatgcaatgttctagactcttctagatgcatgtggtactaattggattatggagataatcttaccgcat 17385424  T
Q  195 tgaatccac 203  Q
    |||||||||    
T  17385425 tgaatccac 17385433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 25105657 - 25105581
Alignment:
Q  91 tattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    |||||||||||||||||||||| ||||||  |||||||||||||||||||| |||  ||||| ||||||| ||||||    
T  25105657 tattcaattatgacacgactcatcaactattcaaatgcatgcaatgttctagactcctctaggtgcatgtggtacca 25105581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 15551215 - 15551132
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||| |||||||  |||||| ||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||    
T  15551215 attcatcaagtcacatattcatttatgacacgactcatcaattactcaaatgcatgcaatgttctagactcttctagatgcatg 15551132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 25487103 - 25486993
Alignment:
Q  94 tcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattccaaaaataatcttaccgt 192  Q
    |||| |||||||||| | ||||| || ||| |||||| ||||||||| ||||||||| |||||||| |||||| |||||||  | | ||||| || ||||    
T  25487103 tcaagtatgacacgaataaccaattatcaagtgcatgtaatgttctagactattctaaatgcatgtggtaccaattggattatagagataattttgccgt 25487004  T
Q  193 attgaatccac 203  Q
    |||||||||||    
T  25487003 attgaatccac 25486993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 6808896 - 6808997
Alignment:
Q  103 acacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagta-ccattggattccaaaaataatcttaccgtattgaatcc 201  Q
    |||||||||||||| || ||| |||||||||||||||| ||| |||||||||||||| ||| | |||||||||   | | ||| |||||||||| |||||    
T  6808896 acacgactcaccaattatcaagtgcatgcaatgttctagactcttctagatgcatgtggtatcaattggattcttgagaaaattttaccgtattaaatcc 6808995  T
Q  202 ac 203  Q
    ||    
T  6808996 ac 6808997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 17760011 - 17759926
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||| ||||  | |||| |||||||||| |||| ||| ||||||||||| |||| |||| |||||||||||||||    
T  17760011 gtaagagtacacctccttttac--aattcaactatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatg 17759926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 19061331 - 19061246
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||| ||||  | |||| |||||||||| |||| ||| ||||||||||| |||| |||| |||||||||||||||    
T  19061331 gtaagagtacacctccttttac--aattcaactatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatg 19061246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 19978442 - 19978350
Alignment:
Q  112 accaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacc-attggattccaaaaataatcttaccgtattgaatccac 203  Q
    |||||||||||| |||||||||| ||||| ||| | |||||||||||| ||||| | |||||| |  | ||||| ||||||||||||||||||    
T  19978442 accaactaacaagtgcatgcaatattctagactctcctagatgcatgtggtaccaaatggattgcggagataattttaccgtattgaatccac 19978350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 8853621 - 8853538
Alignment:
Q  91 tattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattc 174  Q
    ||||||| |||||| ||||||||||| ||  ||||||||||||||||||| |||  |||||||| ||||  |||||| ||||||    
T  8853621 tattcaagtatgactcgactcaccaattattaaatgcatgcaatgttctagactcatctagatgtatgtgataccataggattc 8853538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 14259482 - 14259521
Alignment:
Q  3 taaaatcaccaagtgtacaagtatcacaaaaaataacaaa 42  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  14259482 taaaatcaccaagtgtacaagcatcacaaaaaataacaaa 14259521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 21168268 - 21168213
Alignment:
Q  242 tatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||||    
T  21168268 tatgtaaaaatacacctccttttacatttctcatatgactcaatatgattatgatg 21168213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 31413994 - 31413915
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaac-aaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  |||||||||||||||||||||| ||| |    ||||||||||||||||||| ||| |||||||||||||    
T  31413994 accaagtcacatattcaattatgacacgactcatcaattttttaaatgcatgcaatgttctagactcttctagatgcatg 31413915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 43429119 - 43429033
Alignment:
Q  208 acgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||||| ||||||||||    ||| |||||||||| ||||| || ||||||||||| |||| ||||  ||||||||||||||    
T  43429119 acgtaagagtacacctcctcttacga---tcaactatgtaaaagtacacttccttttacatttctcatatgactcgatatgactatgatg 43429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 11401078 - 11401124
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgtagtaccat 167  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||    
T  11401078 caaatgcatgcaatgttctagactcttctagatgcatgtggtaccat 11401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3294849 - 3294812
Alignment:
Q  1 tttaaaatcaccaagtgtacaagtatcacaaaaaataa 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3294849 tttaagatcaccaagtgtacaagtatcacaaaaaataa 3294812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 17760148 - 17760071
Alignment:
Q  82 caagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||  ||||||||||||| |||||||| ||| ||  |||||||||||||||||||| ||| |||| ||||||||    
T  17760148 caagtcacatattcaattatgatacgactcatcaattactcaaatgcatgcaatgttctagactcttcttgatgcatg 17760071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 19061468 - 19061391
Alignment:
Q  82 caagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||  ||||||||||||| |||||||| ||| ||  |||||||||||||||||||| ||| |||| ||||||||    
T  19061468 caagtcacatattcaattatgatacgactcatcaattactcaaatgcatgcaatgttctagactcttcttgatgcatg 19061391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 17320129 - 17320073
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| ||||  ||||||||||||||    
T  17320129 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 17320073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 54040249 - 54040205
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||    
T  54040249 caaatgcatgcaatgttctagactcttctagatgcatgtggtacc 54040205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 54049536 - 54049492
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||    
T  54049536 caaatgcatgcaatgttctagactcttctagatgcatgtggtacc 54049492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 2548106 - 2548032
Alignment:
Q  121 caaatgcatgcaatgttctatactat--tctagatgcatgtagtaccatt-ggattccaaaaataatcttaccgt 192  Q
    |||||| ||||||||||||||||| |  ||||||||||||| |||||||| ||||||| || ||||| |||||||    
T  2548106 caaatgtatgcaatgttctatactcttctctagatgcatgtggtaccattaggattccgaagataattttaccgt 2548032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 16220412 - 16220345
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggatt 173  Q
    ||||||||||| ||  |||||||||||||||| || |||  ||||||||||||| ||||||| |||||    
T  16220412 cgactcaccaattattaaatgcatgcaatgttttagacttatctagatgcatgtggtaccatgggatt 16220345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 17391793 - 17391884
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    |||||||||||||  |||||||||||||||    ||  |||| || |||||||||||||||||| | ||| |||||||||||||| ||||||    
T  17391793 attcaccaagtcacatattcaattatgacatacttcgtcaaccaatcaaatgcatgcaatgttcaagactcttctagatgcatgtggtacca 17391884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 25105545 - 25105463
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatga 295  Q
    |||||||||||| |||||||||     ||| |||||||||| |||||||| ||||||||||| |||| ||||  ||||||||||||    
T  25105545 gtaagagtacacgtcctcttacaa---tcaactatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatga 25105463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 11834231 - 11834193
Alignment:
Q  4 aaaatcaccaagtgtacaagtatcacaaaaaataacaaa 42  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  11834231 aaaatcaccaagtgtacaagtatcaccaaaaacaacaaa 11834193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 21764289 - 21764251
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgt 159  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  21764289 caaatgcatgaaatgttctagactattctagatgcatgt 21764251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 34558486 - 34558571
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatga 298  Q
    |||||||||||| |||||||||| ||   |  ||||||||| |||||||| ||||||||||| |||| ||||  ||||||| |||||||    
T  34558486 gtaagagtacacctcctcttacgcat---aattatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatga 34558571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 14817276 - 14817192
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || ||||||||||||| | ||| ||||||||||| |||| ||||  ||||||| ||||||    
T  14817276 gtaagagtacacctcctcttacgca---caactatgtaaaaatatatctccttttacatttctcatatgactcgatatgacgatgatg 14817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 15549144 - 15549212
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgact 281  Q
    |||| ||||||| |||||||||| |   || ||||||||||||||||||| ||||||||||| |||| ||||    
T  15549144 gtaaaagtacacctcctcttacgca---caactatgtaaaaatacacctccttttacatttcacatatgact 15549212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 4163736 - 4163680
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  4163736 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 4163680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 8897809 - 8897849
Alignment:
Q  2 ttaaaatcaccaagtgtacaagtatcacaaaaaataacaaa 42  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  8897809 ttaaaatcaccaagtgcacaactatcaccaaaaataacaaa 8897849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 12254451 - 12254387
Alignment:
Q  128 atgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgt 192  Q
    ||||||||||||| ||| ||||| |||||||| ||||||| |||||||  | ||||| |||||||    
T  12254451 atgcaatgttctagactcttctaaatgcatgtggtaccataggattccggagataattttaccgt 12254387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 18968736 - 18968792
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  18968736 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 18968792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20419450 - 20419482
Alignment:
Q  1 tttaaaatcaccaagtgtacaagtatcacaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  20419450 tttaaaatcaccaagtgtacaagtataacaaaa 20419482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24901381 - 24901349
Alignment:
Q  1 tttaaaatcaccaagtgtacaagtatcacaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  24901381 tttaaaatcaccaagtgtacaagtataacaaaa 24901349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 18032840 - 18033030
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgtattgaatccacac 205  Q
    ||||||||||| |||||||||| |||||||||||| |||  ||||||||||||| |||||||| ||||| | | ||||| ||||||| ||||| ||||||    
T  18032840 cgactcaccaattaacaaatgcgtgcaatgttctagactcatctagatgcatgtggtaccattagattcaagagataattttaccgt-ttgaacccacac 18032938  T
Q  206 ccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||  |||| |||| |||||||| ||||||    
T  18032939 ccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacttcattttacatttttcatatgactcaatatgaccatgatg 18033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 24623264 - 24623363
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattcc 175  Q
    |||||||||||||  ||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||    
T  24623264 attcaccaagtcacatattcaattatgacatgactcaccaaataataaatgcatgcaatgttctaaactcttctagatgcatgtggtaccattggattcc 24623363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 31195990 - 31195903
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    |||||||||  |||||||||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  31195990 accaagtcacatattcaattatgacacgactcatcaattattcaaatgcatgcaatgttctagactcttctagatgcatgtggtacca 31195903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 25261831 - 25261898
Alignment:
Q  99 tatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    |||||||||||||||||| |||||| |||||| ||||||||| ||| |||||||||||||| ||||||    
T  25261831 tatgacacgactcaccaattaacaagtgcatgtaatgttctagactcttctagatgcatgtggtacca 25261898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 17500471 - 17500554
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||| |||||||  |||||||||||||||| ||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||    
T  17500471 attcaacaagtcacatattcaattatgacacaactcatcaattattcaaatgcatgcaatgttctagactcttctagatgcatg 17500554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 20177749 - 20177656
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||| |||||||  ||||||||||||| |||||||| ||| ||  |||||||||||||| ||||| ||| ||||| |||||||| ||||||||    
T  20177749 attcatcaagtcacatattcaattatgaaacgactcatcaattactcaaatgcatgcaatattctagactcttctacatgcatgtggtaccatt 20177656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 20222476 - 20222383
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||| |||||||  ||||||||||||| |||||||| ||| ||  |||||||||||||| ||||| ||| ||||| |||||||| ||||||||    
T  20222476 attcatcaagtcacatattcaattatgaaacgactcatcaattactcaaatgcatgcaatattctagactcttctacatgcatgtggtaccatt 20222383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 25608601 - 25608678
Alignment:
Q  82 caagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||  |||||||||||||||| ||||  ||||||  |||||||||||||||||||| ||| |||||||||||||    
T  25608601 caagtcacatattcaattatgacacaactcgtcaactattcaaatgcatgcaatgttctagactcttctagatgcatg 25608678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 19333173 - 19333117
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  19333173 ctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 19333117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 17265361 - 17265444
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaaca-aatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||| |||||||  ||||||||||||||||| |||| ||| ||  | |||||||||||||||||| ||| |||||||||||||    
T  17265361 attcatcaagtcacatattcaattatgacacgcctcatcaattactataatgcatgcaatgttctagactcttctagatgcatg 17265444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 23543880 - 23543813
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggatt 173  Q
    ||||||||||| ||| || |||||||||||||||| ||| ||||||||||||||  |||||| |||||    
T  23543880 cgactcaccaattaataagtgcatgcaatgttctagactcttctagatgcatgtgataccataggatt 23543813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 23217484 - 23217549
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaacta-acaaatgcatgcaatgttcta 140  Q
    ||||| |||||||  |||||||||||||||||||||| ||| ||  ||||||||||||||||||||    
T  23217484 attcatcaagtcacatattcaattatgacacgactcatcaattactcaaatgcatgcaatgttcta 23217549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 24266618 - 24266702
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  24266618 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 24266702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 29296515 - 29296599
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  29296515 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 29296599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 24554128 - 24554072
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| ||||  ||||||||||||||    
T  24554128 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 24554072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 16041253 - 16041171
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  16041253 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 16041171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 16042929 - 16042847
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  16042929 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 16042847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 17624612 - 17624574
Alignment:
Q  3 taaaatcaccaagtgtacaagtatcacaaaaaataacaa 41  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  17624612 taaaatcaccaagtgtacaagtatcaccaacaataacaa 17624574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 18610714 - 18610796
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  18610714 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 18610796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 7468863 - 7468947
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  |   || |||||||||| || ||||| ||||||||||| |||| ||||  ||||||||||||||    
T  7468863 gtaagagtacacctcctcttacaaa---caactatgtaaaagtatacctcgttttacatttctcatatgactcgatatgactatgatg 7468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 17265504 - 17265572
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgact 281  Q
    |||||||||||| |||||||| | |   || |||||||||| |||||||||||||||||||| |||| ||||    
T  17265504 gtaagagtacacctcctcttatgaa---caactatgtaaaagtacacctctttttacatttctcatatgact 17265572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 26010062 - 26010146
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||| | |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  26010062 gtaagagtacacctcctcttatgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 26010146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18119903 - 18119871
Alignment:
Q  1 tttaaaatcaccaagtgtacaagtatcacaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  18119903 tttaaaatcaccaagtgtacaagtataacaaaa 18119871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 20641 - 20462
Alignment:
Q  121 caaatgcatgcaatgttctatactattct--agatgcatgtagtacca-ttggattccaaaaataatcttaccgtattgaatccacacccacgtaagagt 217  Q
    ||||||| |||| ||||||| ||| ||||  |||||||||| |||||| |||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  20641 caaatgcttgcagtgttctagactcttctctagatgcatgtggtaccagttggattccggatataatcttaccgtattgaatccacacccacgtaagagt 20542  T
Q  218 acacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    | |  |||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  20541 aaaactcctcttacgtatttcacctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 20462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 297
Target Start/End: Complemental strand, 5486050 - 5485830
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattcc 175  Q
    |||||| ||||||  |||||||||||||||||||||||||| ||| || ||||||||||||||||  || |||||| ||||||| |||| |||| |||||    
T  5486050 attcactaagtcatatattcaattatgacacgactcaccaaataataagtgcatgcaatgttctagtctcttctaggtgcatgtggtacaattgaattcc 5485951  T
Q  176 aaaaataatcttaccgtattgaatccacacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcat 275  Q
     || ||||| ||||||||  ||||||||||| |||||| |||| || |||| | | |||||| |||||||||||| ||||| || ||||||||||| |||    
T  5485950 taagataattttaccgta-cgaatccacaccaacgtaaaagtatacctcctttcatgtatttgacctatgtaaaagtacacatccttttacatttctcat 5485852  T
Q  276 acgacttaatatgactatgatg 297  Q
    | |||| |||||||||||||||    
T  5485851 atgactcaatatgactatgatg 5485830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 12974984 - 12975098
Alignment:
Q  78 tcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaa 177  Q
    |||||||||||  |||| ||||||||||||| ||||||| ||| ||||| ||||||||||||| ||  |||||||||||||| ||||||| ||||||||     
T  12974984 tcaccaagtcacatattgaattatgacacgattcaccaaataataaatgtatgcaatgttctagacatttctagatgcatgtggtaccataggattccag 12975083  T
Q  178 aaataatcttaccgt 192  Q
    | ||||| |||||||    
T  12975084 atataattttaccgt 12975098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 4228863 - 4228778
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | ||||||||||||||| |||||||| ||||||| ||| |||| |||| |||||||||||||||    
T  4228863 gtaagagtacacctcctcttac--aattcacctatgtaaaagtacacctccttttacacttctcatatgactcaatatgactatgatg 4228778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 24217325 - 24217453
Alignment:
Q  94 tcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacc-attggattccaaaaataatcttaccgt 192  Q
    |||| |||||||  ||||||||| || ||| || ||||||||||||| ||| ||||| |||||||| ||||| || |||||| | | ||||| |||| ||    
T  24217325 tcaagtatgacataactcaccaattatcaagtgaatgcaatgttctagactcttctaaatgcatgtggtaccaataggattctatagataattttacagt 24217424  T
Q  193 attgaatccacacccacgtaagagtacac 221  Q
    ||| ||||||||| |||||||||||||||    
T  24217425 attaaatccacactcacgtaagagtacac 24217453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 22595207 - 22595128
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  |||||||||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||    
T  22595207 accaagtcacatattcaattatgacacgactcatcaattattcaaatgcatgcaatgttctagactcttctagatgcatg 22595128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 31162606 - 31162523
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaacta-acaaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||| |||||||  ||||||||||||||||| |||| ||| || ||||||||||||||||||||| ||| |||||||||||||    
T  31162606 attcatcaagtcacatattcaattatgacacgcctcatcaattacacaaatgcatgcaatgttctagactcttctagatgcatg 31162523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 9520144 - 9520190
Alignment:
Q  2 ttaaaatcaccaagtgtacaagtatcacaaaaaataacaaaacatca 48  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  9520144 ttaaaatcaccaagtgtacaagtatcaccaaaaataacaaaacatca 9520190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 11374428 - 11374343
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| ||||||||||  ||||||| ||||||||||| |||| |||| |||||||||||||||    
T  11374428 gtaagagtacacctcctcttac--aattcaactatgtaaaaggacacctccttttacatttctcatatgactcaatatgactatgatg 11374343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 16374838 - 16374917
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  |||||||||||||||| ||||| |||| |  |||||||||||||||||||| ||| |||||||||||||    
T  16374838 accaagtcacatattcaattatgacacaactcatcaaccattcaaatgcatgcaatgttctagactcttctagatgcatg 16374917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 4173252 - 4173169
Alignment:
Q  212 aagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||||  | ||||||||||||||| |||| ||| ||||||| ||| |||| |||| |||||||||||||||    
T  4173252 aagagtacacctcctcttac--aattcacctatgtaaaagtacatctccttttacacttctcatatgactcaatatgactatgatg 4173169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 19729058 - 19728988
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattcca 176  Q
    ||||||||||| ||| || |||||||||||||||| ||| |||||||||||||| |||||||  |||||||    
T  19729058 cgactcaccaattaataagtgcatgcaatgttctagactcttctagatgcatgtggtaccataagattcca 19728988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 17085055 - 17084987
Alignment:
Q  91 tattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||| ||| | ||| ||||||| |||||||||||||||||||| ||| |||||||||||||    
T  17085055 tattcaattatgtcacaattcatcaactaatcaaatgcatgcaatgttctagacttttctagatgcatg 17084987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 17821666 - 17821626
Alignment:
Q  2 ttaaaatcaccaagtgtacaagtatcacaaaaaataacaaa 42  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  17821666 ttaaaatcaccaagtgtacaagtatcactaaaaataacaaa 17821626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 29162087 - 29162002
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| |||||||||| |||| ||  ||||||||||| |||| |||| |||||||||||||||    
T  29162087 gtaagagtacacctcctcttac--aattcaactatgtaaaagtacatcttcttttacatttctcatatgactcaatatgactatgatg 29162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 4173397 - 4173307
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaacta-acaaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    |||||||||||||  |||||||||||||||| |||||  |||||   ||||||||||||| ||||| ||  |||||||||||||| |||||    
T  4173397 attcaccaagtcacatattcaattatgacacaactcattaactatttaaatgcatgcaatattctagacacttctagatgcatgttgtacc 4173307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 29604179 - 29604263
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  29604179 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 29604263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 15006203 - 15006147
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| ||||  ||||||||||||||    
T  15006203 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 15006147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 17375329 - 17375244
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||  |||||||||  | |||| |||||||||| || ||||| ||||||||||| |||| |||| ||||||| |||||||    
T  17375329 gtaagagtacaactcctcttac--aattcaactatgtaaaagtagacctccttttacatttctcatatgactcaatatgaatatgatg 17375244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 4229006 - 4228923
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaacta-acaaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||  |||||||||||||||| |||||  |||||   ||||||||||||| ||||| ||  |||||||||||||    
T  4229006 attcaccaagtcacatattcaattatgacacaactcattaactatttaaatgcatgcaatattctagacacttctagatgcatg 4228923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 11374571 - 11374489
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcat 157  Q
    |||||| ||||||  ||||||||| |||||| | ||| |||| |  |||||||||||||||||||| ||| ||||||||||||    
T  11374571 attcacaaagtcacatattcaattgtgacacaattcatcaaccactcaaatgcatgcaatgttctagactcttctagatgcat 11374489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 19627784 - 19627866
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  19627784 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 19627866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 35011030 - 35010948
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  35011030 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 35010948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 1560372 - 1560449
Alignment:
Q  91 tattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||||| |||||| ||| ||| ||| |||||| ||| |||||||||||| ||| ||||| || ||||| ||||||||    
T  1560372 tattcaagtatgactcgattcatcaattaacaattgcttgcaatgttctagactcttctatatacatgtggtaccatt 1560449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 12466222 - 12466177
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    |||||||||||||||||||| ||| ||||||||| |||| ||||||    
T  12466222 caaatgcatgcaatgttctagactcttctagatgtatgtggtacca 12466177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 32350692 - 32350776
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  |   || |||||||||| | || ||| ||||||||||| |||| |||| |||||||||||||||    
T  32350692 gtaagagtacacctcctcttacaaa---caactatgtaaaagtgcatctccttttacatttctcatatgactcaatatgactatgatg 32350776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 21621753 - 21621816
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcata 276  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| ||||    
T  21621753 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttcacata 21621816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 29162184 - 29162148
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcat 157  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  29162184 caaatgcatgcaatgttctagactcttctagatgcat 29162148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 75 - 259
Target Start/End: Complemental strand, 4230 - 4045
Alignment:
Q  75 tattcaccaagtcagttattcaatt-atgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccatt-ggat 172  Q
    |||||||||||||| ||||| |||| ||||||||| ||||||| |||||| |||||||||| ||||| ||| |||||||||||||| |||||||| ||||    
T  4230 tattcaccaagtcacttatttaatttatgacacgaatcaccaattaacaagtgcatgcaatattctagactcttctagatgcatgtggtaccatttggat 4131  T
Q  173 tccaaaaataatcttaccgtattgaatccacacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctc 259  Q
    |      ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4130 tatggggataattttaccgtat-gaatccacatccacgtaagagtacacatcctcttacgtatttcacctatgtaagagtacacctc 4045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 4059 - 3978
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgact 291  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| |||| ||||||||||||||    
T  4059 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacatccttttacatttctcatatgacttaatatgact 3978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 8325489 - 8325315
Alignment:
Q  122 aaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgtattgaatccacacccacgtaagagtacac 221  Q
    ||||| ||||||||||||| |||  ||||||||||||| || |||| ||| ||| || ||||| |||| || ||||||||||||||||||||||||||||    
T  8325489 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccataggagtccgaagataattttacagt-ttgaatccacacccacgtaagagtacac 8325391  T
Q  222 atcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
     |||||  | ||||||||||||||||||| |||| ||| ||||||||||| |||| ||||||||||||||||||||    
T  8325390 ctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgacttaatatgactatgatg 8325315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 26427074 - 26427235
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattcc 175  Q
    |||||||| |||  || |||| |||||||||||||||||  || ||| |||||||||||||||| ||| ||||| ||||| || |||||| |||||||||    
T  26427074 ttcaccaattcacatagtcaagtatgacacgactcaccagttatcaagtgcatgcaatgttctagactcttctaaatgcacgtggtaccaattggattcc 26427173  T
Q  176 aaaaataatcttaccgtattgaatccacacccacgtaagagtacacatcctcttacgtattt 237  Q
     || ||||| ||||| |||||||||||||||||| ||||||||||| ||| |||| ||||||    
T  26427174 gaagataattttaccatattgaatccacacccacataagagtacacctccacttatgtattt 26427235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 6461468 - 6461336
Alignment:
Q  110 tcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattccaaaaataatcttaccgtattgaatccacaccca 208  Q
    |||||||||| |||||||||| |||||| || ||| ||| |||||||||| |||||| || |||||| || ||||| || ||||||||||||||| ||||    
T  6461468 tcaccaactatcaaatgcatgaaatgttttagactcttcaagatgcatgtggtaccaattcgattccgaagataattttgccgtattgaatccacgccca 6461369  T
Q  209 cgtaagagtacacatcctcttacgtatttcacc 241  Q
    ||||||||||||| ||| ||||| |||||||||    
T  6461368 cgtaagagtacacctccacttacatatttcacc 6461336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 9129014 - 9128915
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattc 174  Q
    |||||||||||||  |||||||||||||||||||||||||| ||  ||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||    
T  9129014 attcaccaagtcacatattcaattatgacacgactcaccaaatattcaaatgcatacaatgttctagactcttctagatgcatgtggtaccattggattc 9128915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 45148180 - 45148265
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  45148180 gtaagagtacacctcctcttac--aattcaactatgtaaaaatacacctccttttacatttctcatatgacttaatatgactatgatg 45148265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 39293458 - 39293365
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||| |||||||  |||||||||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||  ||||||||    
T  39293458 attcatcaagtcacatattcaattatgacacgactcatcaattactcaaatgcatgcaatgttctagactcttctagatgcatgcggtaccatt 39293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 14278215 - 14278125
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    ||||| |||||||  |||||||||||||||| ||||| ||| ||  |||||||||||||||||||| ||| ||||| |||||||| |||||    
T  14278215 attcatcaagtcacatattcaattatgacacaactcatcaattactcaaatgcatgcaatgttctagactcttctaaatgcatgtggtacc 14278125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 4072284 - 4072219
Alignment:
Q  93 ttcaattatgacacgactcaccaactaac-aaatgcatgcaatgttctatactattctagatgcat 157  Q
    ||||||||||||| |||||| ||||||   ||||||||||||||||||||||| ||||||||||||    
T  4072284 ttcaattatgacatgactcatcaactattgaaatgcatgcaatgttctatactcttctagatgcat 4072219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 14974305 - 14974185
Alignment:
Q  47 caacaatcaccaaggtttaccaat-cacgtattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatacta 145  Q
    ||||| |||||||  || |||||| ||| ||||||||||||||  |||| ||| ||||||   |||||||| |  ||||||| |||||||||||| ||||    
T  14974305 caacattcaccaaatttcaccaatacacatattcaccaagtcacatatttaatcatgacatatctcaccaaatt-caaatgcttgcaatgttctagacta 14974207  T
Q  146 ttctagatgcatgtagtaccat 167  Q
    |||||||||||||| |||||||    
T  14974206 ttctagatgcatgtggtaccat 14974185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 15403781 - 15403661
Alignment:
Q  47 caacaatcaccaaggtttaccaat-cacgtattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatacta 145  Q
    ||||| |||||||  || |||||| ||| ||||||||||||||  |||| ||| ||||||   |||||||| |  ||||||| |||||||||||| ||||    
T  15403781 caacattcaccaaatttcaccaatacacatattcaccaagtcacatatttaatcatgacatatctcaccaaatt-caaatgcttgcaatgttctagacta 15403683  T
Q  146 ttctagatgcatgtagtaccat 167  Q
    |||||||||||||| |||||||    
T  15403682 ttctagatgcatgtggtaccat 15403661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 44306988 - 44306895
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||| |||||||  ||||||||||||| |||||||| ||| ||  |||||||||||||| ||||| ||| ||||| |||||||| ||||||||    
T  44306988 attcatcaagtcacatattcaattatgaaacgactcatcaattactcaaatgcatgcaatattctagactcttctacatgcatgtggtaccatt 44306895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 16065009 - 16065101
Alignment:
Q  76 attcaccaagtcagttatt-caattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    |||||||||||||  |||| ||||| |||||||||||||||| ||  ||||| |||||||||||||| | | |||||||||||||| ||||||    
T  16065009 attcaccaagtcacatatttcaattctgacacgactcaccaaatattcaaattcatgcaatgttctagaatcttctagatgcatgtggtacca 16065101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 16207030 - 16207114
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgat 296  Q
    |||||||||||| |||||||||  | |||| |||||||||| |||||||| ||||||||||| |||| |||| ||| || |||||||    
T  16207030 gtaagagtacacctcctcttac--aattcaactatgtaaaattacacctccttttacatttctcatatgactcaatttgtctatgat 16207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 3172227 - 3172157
Alignment:
Q  122 aaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgt 192  Q
    |||||||||||||||| || ||| |||||||||||||| ||||||| |||||||  | ||||| |||||||    
T  3172227 aaatgcatgcaatgttttaaactcttctagatgcatgtggtaccataggattccggagataattttaccgt 3172157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 16436464 - 16436378
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgt 192  Q
    |||||||||||   | |||||||||| |||||||| ||| |||||||||||||| ||| ||| |||||||| | ||||| |||||||    
T  16436464 cgactcaccaatagataaatgcatgctatgttctagactcttctagatgcatgtggtatcataggattccagagataattttaccgt 16436378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 14939398 - 14939482
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  14939398 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 14939482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 15366991 - 15367075
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  15366991 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 15367075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 6210627 - 6210571
Alignment:
Q  110 tcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    ||||||| || |||||||||||||||||||| ||| |||||||||||| | ||||||    
T  6210627 tcaccaattatcaaatgcatgcaatgttctagactcttctagatgcatatggtacca 6210571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 16382178 - 16382233
Alignment:
Q  242 tatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    ||||||| | |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  16382178 tatgtaagagtacacctccttttacatttctcatatgactcaatatgactatgatg 16382233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 45148036 - 45148119
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||  ||| ||||| |||||| | ||| |||| |  |||||||||||||||||||| ||| |||||||||||||    
T  45148036 attcaccaagtcacatatccaattgtgacacaattcatcaaccactcaaatgcatgcaatgttctagactcttctagatgcatg 45148119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 14253050 - 14252968
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  14253050 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 14252968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 12246473 - 12246510
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  12246473 caaatgcatgcaatgttctagactcttctagatgcatg 12246510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 14280151 - 14280024
Alignment:
Q  75 tattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacc-attggatt 173  Q
    ||||||||||||||  ||||||| | ||||||   ||| |||||  |||||||||||||||||||| ||   |||| || ||||| ||||| ||||||||    
T  14280151 tattcaccaagtcacatattcaagtgtgacacatttcatcaactt-caaatgcatgcaatgttctagacatctctacatccatgtggtaccaattggatt 14280053  T
Q  174 ccaaaaataatcttaccgtattgaatccac 203  Q
    ||  | |||||||||||||| |||||||||    
T  14280052 ccggagataatcttaccgta-tgaatccac 14280024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 15756003 - 15755926
Alignment:
Q  91 tattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||||| |||||| ||| ||| ||| |||||| ||| |||||||||||| ||| ||||| || ||||| ||||||||    
T  15756003 tattcaagtatgactcgattcatcaattaacaattgcttgcaatgttctagactcttctatatacatgtggtaccatt 15755926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 17151105 - 17151024
Alignment:
Q  123 aatgcatgcaatgttctatactattctagatgcatgtagtacc-attggattccaaaaataatcttaccgtattgaatccac 203  Q
    ||||||||||||||| || ||| || ||||||||||| ||||| ||||||||||  | ||||| | ||||| ||||||||||    
T  17151105 aatgcatgcaatgttttagactcttttagatgcatgtggtaccaattggattccggagataatttaaccgttttgaatccac 17151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 4437495 - 4437551
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||| ||| ||||||||||| |||| ||||  ||||||||||||||    
T  4437495 ctatgtaaaagtacatctccttttacatttctcatatgactcgatatgactatgatg 4437551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 4444896 - 4444952
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||| ||| ||||||||||| |||| ||||  ||||||||||||||    
T  4444896 ctatgtaaaagtacatctccttttacatttctcatatgactcgatatgactatgatg 4444952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 17225477 - 17225414
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcata 276  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| ||||    
T  17225477 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttcacata 17225414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 19076290 - 19076440
Alignment:
Q  121 caaatgcatgcaatgttctatactattct--agatgcatgtagtaccattggattccaaaaataatcttaccgtattgaatccacacccacgtaagagta 218  Q
    |||||||||||||||||||| ||| ||||  |||||||||| |||||||||||||||  | ||||| |||| ||||||||||||||||||| ||||||||    
T  19076290 caaatgcatgcaatgttctagacttttctttagatgcatgtggtaccattggattccggagataatattactgtattgaatccacacccacataagagta 19076389  T
Q  219 cacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatt 269  Q
    ||  |||||||||||||||||| || ||||||||||||||| |||||||||    
T  19076390 catctcctcttacgtatttcacatacgtaaaaatacacctccttttacatt 19076440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 241
Target Start/End: Complemental strand, 18420589 - 18420441
Alignment:
Q  94 tcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacc-attggattccaaaaataatcttaccgt 192  Q
    |||| |||||||||||||||||| ||  || |||||||||||||||||||| ||||| |||||| ||||||| || | ||||   | ||||| |||||||    
T  18420589 tcaagtatgacacgactcaccaattataaagtgcatgcaatgttctatactcttctaaatgcatatagtaccaatagaattctggagataattttaccgt 18420490  T
Q  193 attgaatccacacccacgtaagagtacacatcctcttacgtatttcacc 241  Q
     || ||| | ||||||||||||||||||| |||  ||||||||||||||    
T  18420489 ttttaattctcacccacgtaagagtacacctccagttacgtatttcacc 18420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 14616440 - 14616563
Alignment:
Q  53 tcaccaaggtttaccaat-cacgtattcaccaagtcagttattcaatt-atgacacgactcaccaactaacaaatgcatgcaatgttctatactattcta 150  Q
    |||||||| || |||||| ||| || ||||||| ||| ||||| |||| ||||||||||||||||| |||||| |||||||||||||||| |||  ||||    
T  14616440 tcaccaagtttcaccaatgcacataatcaccaaatcacttattaaatttatgacacgactcaccaattaacaagtgcatgcaatgttctagactcctcta 14616539  T
Q  151 gatgcatgtagtaccattggattc 174  Q
    ||||||||| |||| |||||||||    
T  14616540 gatgcatgtggtactattggattc 14616563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 14617746 - 14617835
Alignment:
Q  202 acacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgact 291  Q
    ||||||| |||||| ||||| ||||| |||||||||||||||||||||  |||||||| ||||||||||| |||| |||| |||||||||    
T  14617746 acacccatgtaagattacacctcctcctacgtatttcacctatgtaaaggtacacctcattttacatttctcatatgactcaatatgact 14617835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 10116046 - 10115866
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattccaaaaataatcttaccgtattgaatccacacccacgtaagagtac 219  Q
    |||||||||||||||||||| ||| || |  |||||||| |||| | || |||||  || ||||| ||||||||||||||||||||| | ||||||||||    
T  10116046 caaatgcatgcaatgttctagactctttttaatgcatgtggtactaattagattctgaatataattttaccgtattgaatccacaccaatgtaagagtac 10115947  T
Q  220 acatcctcttacgtatttc-----acctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatga 295  Q
    || ||| ||||||||||||     | | |||||||| ||||||||  ||||||||   |||| |||| |||||||||||||    
T  10115946 acctccacttacgtatttccccaaagcaatgtaaaagtacacctccatttacattcttcataagactcaatatgactatga 10115866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 40902438 - 40902370
Alignment:
Q  91 tattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||    
T  40902438 tattcaattatgacacgactcatcaattactcaaatgcatgcaatgttctagactcttctagatgcatg 40902370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 41918499 - 41918420
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  |||||| ||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||    
T  41918499 accaagtcacatattcatttatgacacgactcatcaattattcaaatgcatgcaatgttctagactcttctagatgcatg 41918420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 13933258 - 13933386
Alignment:
Q  75 tattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggatt 173  Q
    ||||||| ||||||  ||||||| ||||||||   |||| ||||  |||||||||||||||||| | ||  ||||| ||||||||  ||| | |||||||    
T  13933258 tattcacgaagtcacatattcaagtatgacacatttcactaactt-caaatgcatgcaatgttccagacacttctacatgcatgtgatactaattggatt 13933356  T
Q  174 ccaaaaataatcttaccgtattgaatccac 203  Q
    ||||| ||||| ||||||||||||||||||    
T  13933357 ccaaagataattttaccgtattgaatccac 13933386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 18667861 - 18667793
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattc 174  Q
    ||||||||||| ||| || | |||||||||||||||||| |||||||||||||| ||||| | ||||||    
T  18667861 cgactcaccaagtaataagtacatgcaatgttctatactcttctagatgcatgtggtaccgtaggattc 18667793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 20847372 - 20847467
Alignment:
Q  94 tcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacc-attggattccaaaaataatctta 188  Q
    |||| |||||||||  |||||||  | |||||||||||||||||||| ||| |||||||| ||||| ||||| ||||||||||  | |||||||||    
T  20847372 tcaagtatgacacgtttcaccaatgatcaaatgcatgcaatgttctagactcttctagatacatgtggtaccaattggattccggagataatctta 20847467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 18713533 - 18713447
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgt 192  Q
    ||||||||||| ||| || | |||| |||||| |||||| |||||||||||||| ||||||| | |||||| | ||||| |||||||    
T  18713533 cgactcaccaagtaataagtacatgtaatgttttatactcttctagatgcatgtggtaccatagaattccagagataattttaccgt 18713447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12452362 - 12452322
Alignment:
Q  2 ttaaaatcaccaagtgtacaagtatcacaaaaaataacaaa 42  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  12452362 ttaaaatcaccaagtgcacaagtatcaccaaaaataacaaa 12452322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 12732764 - 12732847
Alignment:
Q  211 taagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    ||||||||||| ||||||||||    ||| |||||||||| |||||||  ||||||||||| |||| ||||  ||||||||||||||    
T  12732764 taagagtacacctcctcttacga---tcaactatgtaaaagtacaccttcttttacatttctcatatgactcgatatgactatgatg 12732847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 15215579 - 15215511
Alignment:
Q  91 tattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||||||||||||||| |||| ||| ||  ||||| |||||||||||||| ||| |||||||||||||    
T  15215579 tattcaattatgacacggctcatcaattactcaaatacatgcaatgttctagactcttctagatgcatg 15215511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 19699320 - 19699238
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  19699320 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 19699238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 19709905 - 19709823
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  19709905 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 19709823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 38763399 - 38763483
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| || ||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||| | ||||||| ||||||    
T  38763399 gtaagagtacacctcatcttacgca---caactatgtaaaagtacacctccttttacatttcacatatgacatgatatgacaatgatg 38763483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 42707399 - 42707452
Alignment:
Q  243 atgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgat 296  Q
    |||||||| |||||||| ||||||||||| |||| ||||  |||||||||||||    
T  42707399 atgtaaaagtacacctccttttacatttcacatatgactcgatatgactatgat 42707452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 34135972 - 34135790
Alignment:
Q  91 tattcaattatgacacgactcaccaacta-acaaatgcatgcaatgttctatactat--tctagatgcatgtagt-accattggattccaaaaataatct 186  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||| |  ||| |  ||||||||||||| || |  |||| |||||| | |||||||    
T  34135972 tattcaattatgacacgactcaccaaatattcaaatacatgcaatgttatggactcttctctagatgcatgtggtaaaaattgaattccagagataatct 34135873  T
Q  187 taccgtattgaatccacacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatt 269  Q
    ||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||    
T  34135872 tattgtattgaatccacacccaagtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacctccttttacatt 34135790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 22576492 - 22576619
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattcc 175  Q
    ||||| |||||||  ||||||| |||||||||||||| ||| |||||| |||||||||||||||| ||| || ||||||||||| ||||||  || ||||    
T  22576492 attcatcaagtcacatattcaactatgacacgactcatcaaataacaagtgcatgcaatgttctagactcttttagatgcatgtggtaccaaagggttcc 22576591  T
Q  176 aaaaataatcttaccgtattgaatccac 203  Q
     || ||||| |||||||  |||||||||    
T  22576592 gaagataattttaccgttatgaatccac 22576619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 23157865 - 23157959
Alignment:
Q  75 tattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattc--tagatgcatgtagtaccat 167  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||  ||| || |||||| |||  ||||||||||| |||||||    
T  23157865 tattcaccaaatcacttattcaattatgacacgactcaccaattaacaaatgcatataatattttatactcttctatagatgcatgtggtaccat 23157959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 23569122 - 23569216
Alignment:
Q  75 tattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattc--tagatgcatgtagtaccat 167  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||  ||| || |||||| |||  ||||||||||| |||||||    
T  23569122 tattcaccaaatcacttattcaattatgacacgactcaccaattaacaaatgcatataatattttatactcttctatagatgcatgtggtaccat 23569216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 20271983 - 20272068
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    ||||||||||||||||||||||  ||  ||||||||||||| |||||||| ||||||||||| |||| |||| ||||||||| |||||    
T  20271983 gtaagagtacacatcctcttacaaat--cacctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactgtgatg 20272068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 21652761 - 21652835
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaacta-acaaatgcatgcaatgttctatactattct 149  Q
    |||||||||||||  |||||||||||||||||||||||||| ||  |||||||||||||||||||| ||| ||||    
T  21652761 attcaccaagtcacatattcaattatgacacgactcaccaagtattcaaatgcatgcaatgttctagactcttct 21652835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 45619788 - 45619705
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||  |||||||||||||||| | ||| |||| |  |||||||||||||||||||| ||| |||||||||||||    
T  45619788 attcaccaagtcacgtattcaattatgacacaattcatcaaccattcaaatgcatgcaatgttctagactcttctagatgcatg 45619705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 22331123 - 22331202
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  |||||||||||||||||||| | ||  ||  |||||||||||||||||||| ||| |||||||||||||    
T  22331123 accaagtcacatattcaattatgacacgacttatcagttattcaaatgcatgcaatgttctagactcttctagatgcatg 22331202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 25132799 - 25132883
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||||||||||    
T  25132799 gtaagagtacacctcctcttacaaa---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 25132883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 7513769 - 7513687
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  7513769 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 7513687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 42180116 - 42180034
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    || ||||| || |||||||||||||||||||| ||| |||||||||||||    
T  42180116 ttcatcaagtcacatattcaattatgacatacttcgccaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 42180034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 19660950 - 19661034
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   |  |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  19660950 gtaagagtacacctcctcttacgca---ccactatgtaaaagtacacctccttttacatttcacatatgactcgatatgacgatgatg 19661034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 34136096 - 34136048
Alignment:
Q  3 taaaatcaccaagtgtacaagtatcacaaaaaataacaaaacatcaacaa 52  Q
    ||||||||||||||||||||| | ||| ||||||||| ||||||||||||    
T  34136096 taaaatcaccaagtgtacaagcaccaccaaaaataac-aaacatcaacaa 34136048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 6093442 - 6093527
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| || ||||||| ||||   | ||||||||||| |||| |||| |||||||||||||||    
T  6093442 gtaagagtacacctcctcttac--aattcaactgtgtaaaagtacaaacccttttacatttctcatatgactcaatatgactatgatg 6093527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 18994713 - 18994808
Alignment:
Q  71 cacgtattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccat 167  Q
    ||||||| |||||| |||  || |||| ||||||  |||||||||| | |||| || |||||||| |||| ||| |||||||||||||| |||||||    
T  18994713 cacgtatacaccaattcatataatcaagtatgacttgactcaccaaatcacaa-tgtatgcaatgctctagactcttctagatgcatgtggtaccat 18994808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 37278041 - 37278188
Alignment:
Q  94 tcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattccaaaaataatcttaccgt 192  Q
    |||| |||||||| ||||||||| || ||| |||||||||||||||| ||| || ||||| || || |||||| |||||||||  | ||||| |||| |     
T  37278041 tcaagtatgacacaactcaccaattatcaagtgcatgcaatgttctagactcttttagatacacgtggtaccaattggattccggagataattttacagc 37278140  T
Q  193 attgaatccacacccacgtaagagtacacatcctcttacgtatttcac 240  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  37278141 attgaatccacacccacgtaagagtacacctccacttacgtatttcac 37278188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 37275770 - 37275896
Alignment:
Q  94 tcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacca-ttggattccaaaaataatcttaccgt 192  Q
    |||| |||||||| ||||||||| || ||| ||||||||||||||||  || ||||| || ||||| |||||| |||||||||  | ||||| |||||||    
T  37275770 tcaagtatgacacaactcaccaattatcaagtgcatgcaatgttctaggctcttctaaatacatgtggtaccaattggattccggagataattttaccgt 37275869  T
Q  193 attgaatccacacccacgtaagagtac 219  Q
    |||||||||||||||||||||||||||    
T  37275870 attgaatccacacccacgtaagagtac 37275896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 25340907 - 25341001
Alignment:
Q  99 tatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccatt-ggattccaaaaataatcttaccgt 192  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||  ||||||||||||| |||||||| |||||||| | ||||| |||||||    
T  25340907 tatgactcgactcaccaattaacaaatgcatgcaatgttctagactcatctagatgcatgtggtaccattaggattccagagataattttaccgt 25341001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 14343590 - 14343506
Alignment:
Q  82 caagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    |||||||  |||||||||||||||||| ||| ||||||  |||||||||||||||||| | ||| |||||||||||||| |||||    
T  14343590 caagtcacatattcaattatgacacgaatcatcaactattcaaatgcatgcaatgttccagactcttctagatgcatgtggtacc 14343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 11765141 - 11765058
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||| |||||||  |||||||||||||||||||||| ||| ||  |||||||||| ||||||||| ||| |||||||||||||    
T  11765141 attcatcaagtcacatattcaattatgacacgactcatcaattactcaaatgcatgaaatgttctagactcttctagatgcatg 11765058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 16837082 - 16837007
Alignment:
Q  91 tattcaattatgacacgactcaccaactaac-aaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    ||||||||||||||||||||||   |||| | ||||||||||||||||||| ||| ||||||||||||| ||||||    
T  16837082 tattcaattatgacacgactcattgactatccaaatgcatgcaatgttctagactcttctagatgcatgcagtacc 16837007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 19318181 - 19318120
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccat 167  Q
    ||||||||||| ||| ||||||||| ||||||||| ||| |||||||||||||| |||||||    
T  19318181 cgactcaccaaataataaatgcatgtaatgttctagactcttctagatgcatgtggtaccat 19318120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 21108171 - 21108232
Alignment:
Q  236 ttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||| |||||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  21108171 ttcaactatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 21108232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 24082727 - 24082811
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||||||||  ||||||| ||||||    
T  24082727 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatacgactcgatatgacgatgatg 24082811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 5622981 - 5622926
Alignment:
Q  242 tatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||||    
T  5622981 tatgtaaaaatacacctccttttacatttctcatatgactcaatatgattatgatg 5622926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 26561368 - 26561284
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||| |||||||||||||||||  |   || |||||||||| |||||||| ||||||||||| |||| |||| ||||||| |||||||    
T  26561368 gtaaaagtacacatcctcttacaaa---caactatgtaaaagtacacctccttttacatttctcatatgactcaatatgattatgatg 26561284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 29912670 - 29912754
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  29912670 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 29912754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 34937905 - 34937987
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  34937905 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 34937987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 6455319 - 6455375
Alignment:
Q  241 ctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||| |||||||| ||||||||||| |||| ||||   |||||||||||||    
T  6455319 ctatgtaaaagtacacctccttttacatttctcatatgactcgttatgactatgatg 6455375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 19266830 - 19266931
Alignment:
Q  71 cacgtattcaccaagtcagttattcaattatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattgg 170  Q
    ||||||| |||||| |||  || |||| |||||| ||||||||||| | |||| | |  ||| |||| || ||| |||||||||||||||||||||| ||    
T  19266830 cacgtatacaccaattcacataatcaagtatgactcgactcaccaaatcacaagtac--gcattgttgtagactcttctagatgcatgtagtaccatagg 19266927  T
Q  171 attc 174  Q
    ||||    
T  19266928 attc 19266931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 22949909 - 22949949
Alignment:
Q  2 ttaaaatcaccaagtgtacaagtatcacaaaaaataacaaa 42  Q
    ||||||||||||||||||||| |||||| ||||||| ||||    
T  22949909 ttaaaatcaccaagtgtacaattatcaccaaaaatatcaaa 22949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 1581 - 1483
Alignment:
Q  198 atccacacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgat 296  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| |||| ||||||||||||||    
T  1581 atccccacccacgtaagagtacacctcctcttaagtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgat 1483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 290
Target Start/End: Original strand, 79315 - 79493
Alignment:
Q  110 tcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgtattgaatccacacccac 209  Q
    ||||||| |||||||||| |||||||||||| | |  ||||||||||| | |||||||| |||||| || | ||| ||||||| ||||| ||||||||||    
T  79315 tcaccaattaacaaatgcgtgcaatgttctagattcatctagatgcatctggtaccattcgattccgaagacaattttaccgt-ttgaacccacacccac 79413  T
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgac 290  Q
    ||||||||  || ||||  ||||||||| |||||||| | | |||||||| ||||||||||| |||| |||| ||||||||    
T  79414 gtaagagt-gacctccttctacgtattttacctatgtgatagtacacctccttttacatttctcatatgactcaatatgac 79493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 14675 - 14593
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||||||||||  |||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||    
T  14675 ttcaccaagtcatatattcaattatgacacgactcatcaactattcaaatgcatgcaatgttctagactattctagatgcatg 14593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 15599 - 15508
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtacca 166  Q
    ||||| |||||||  |||||||||||||||||||||| ||||||  |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  15599 attcaacaagtcacatattcaattatgacacgactcatcaactattcaaatgcatgcaatgttctagactcttctagatgcatgtggtacca 15508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 15472 - 15390
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatg 294  Q
    |||||||||||| |||||||||  | ||||||||||||||| |||||| | ||||||||||| |||| | || ||||||||||||    
T  15472 gtaagagtacacctcctcttac--aattcacctatgtaaaagtacacccccttttacatttctcatatggctcaatatgactatg 15390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 200937 - 200814
Alignment:
Q  53 tcaccaaggtttaccaat-cacgtattcaccaagtcagttattcaatt-atgacacgactcaccaactaacaaatgcatgcaatgttctatactattcta 150  Q
    |||||||| || |||||| ||| || ||||||| ||| ||||| |||| ||||||||||||||||| |||||| |||||||||||||||| |||  ||||    
T  200937 tcaccaagtttcaccaatgcacataatcaccaaatcacttattaaatttatgacacgactcaccaattaacaagtgcatgcaatgttctagactcctcta 200838  T
Q  151 gatgcatgtagtaccattggattc 174  Q
    ||||||||| |||| |||||||||    
T  200837 gatgcatgtggtactattggattc 200814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 199631 - 199542
Alignment:
Q  202 acacccacgtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgact 291  Q
    ||||||| |||||| ||||| ||||| |||||||||||||||||||||  |||||||| ||||||||||| |||| |||| |||||||||    
T  199631 acacccatgtaagattacacctcctcctacgtatttcacctatgtaaaggtacacctcattttacatttctcatatgactcaatatgact 199542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 21663 - 21582
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactat 293  Q
    ||||||||||||||||||||||  || |||||||||||||| |||||||| ||||| ||||| |||| |||| |||||||||||    
T  21663 gtaagagtacacatcctcttac--atctcacctatgtaaaattacacctccttttagatttctcatatgactcaatatgactat 21582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 33395936 - 33396021
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| |||||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  33395936 gtaagagtacacctcctcttac--aattcaactatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 33396021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 21199297 - 21199238
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtacc 165  Q
    ||||||||||| ||  ||||||||||||||||||| |||  ||||||||||||| |||||    
T  21199297 cgactcaccaaatattaaatgcatgcaatgttctagactcgtctagatgcatgtggtacc 21199238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 20252652 - 20252734
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  20252652 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 20252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 33395839 - 33395876
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  33395839 caaatgcatgcaatgttctagactcttctagatgcatg 33395876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 17022185 - 17022248
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcata 276  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| ||||    
T  17022185 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcata 17022248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 12710 - 12630
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgc 155  Q
    ||||| |||||||  ||||||||||| |||||||||| ||||||  |||||||||||||||||||| ||| ||||||||||    
T  12710 attcaacaagtcacatattcaattattacacgactcatcaactattcaaatgcatgcaatgttctagactcttctagatgc 12630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 20176 - 20255
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  || ||||||||||||||||||| ||| ||  |||||||||||||||||||| ||| |||||||||||||    
T  20176 accaagtcacataatcaattatgacacgactcatcaattattcaaatgcatgcaatgttctagactcttctagatgcatg 20255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 11080 - 10997
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    ||||| |||||||  ||||||||||||| |||||||| ||||||  |||||||||||||| ||||| ||||||||| |||||||    
T  11080 attcaacaagtcatatattcaattatgatacgactcatcaactattcaaatgcatgcaatattctagactattctacatgcatg 10997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 10937 - 10853
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| |||||| ||| |||||||| ||||||| ||| |||| |||| |||||||||||||||    
T  10937 gtaagagtacacctcctcttac--aattcaactatgttaaagtacacctccttttaca-ttctcatatgactcaatatgactatgatg 10853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 11460 - 11577
Alignment:
Q  51 aatcaccaaggtttaccaat-cacgtattcaccaagtcagttattcaattatgacacgact-caccaactaacaaatgcatgcaatgttctatactattc 148  Q
    ||||| |||| || |||||| ||| ||||||||||||||  || |||| |||||||||  | |||||| || |||||||||||||| ||||| ||| |||    
T  11460 aatcaacaagtttcaccaatgcacatattcaccaagtcacatagtcaagtatgacacgttttcaccaattatcaaatgcatgcaatattctagactcttc 11559  T
Q  149 tagatgcatgtagtacca 166  Q
    ||||||||||| ||||||    
T  11560 tagatgcatgtggtacca 11577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 6734 - 6650
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || ||||||||||||||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  6734 gtaagagtacacctcctcttacgca---caactatgtaaaaatacacctccttttacatttcacatatgactcgatatgacaatgatg 6650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 36509 - 36416
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    ||||| |||||||  ||||||||||||||||||| || | ||||  |||||||||||||||||||| ||| ||||| |||||||  ||||||||    
T  36509 attcaacaagtcacatattcaattatgacacgacccatcgactattcaaatgcatgcaatgttctagactcttctatatgcatgcggtaccatt 36416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 101174 - 101105
Alignment:
Q  99 tatgacacgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccatt 168  Q
    |||||| ||||| ||||| ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||    
T  101174 tatgactcgacttaccaattaataaatgcatgcaatgttctagactcatctagatgcatgtggtaccatt 101105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 11080 - 11172
Alignment:
Q  76 attcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatgtagtaccat 167  Q
    ||||| |||||||  |||||||| ||||||||||||| ||| ||  |||||||||||||||||||| ||| ||| |||||||||  |||||||    
T  11080 attcatcaagtcacatattcaatcatgacacgactcatcaattactcaaatgcatgcaatgttctagactcttcaagatgcatgcggtaccat 11172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 11202 - 11287
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| || ||||||  | |||| |||||||||| ||||| || ||||||||||| |||| ||||  ||||||||||||||    
T  11202 gtaagagtacacctcttcttac--aattcaactatgtaaaagtacacatccttttacatttctcatatgactcgatatgactatgatg 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 5836 - 5903
Alignment:
Q  108 actcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattcc 175  Q
    |||||| || ||| ||||||||||||||||||| ||  |||||||||||||| ||||||| |||||||    
T  5836 actcactaaataataaatgcatgcaatgttctagacccttctagatgcatgtggtaccataggattcc 5903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 26094 - 26008
Alignment:
Q  106 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccaaaaataatcttaccgt 192  Q
    |||||||||||   | |||||||||| |||||||| ||| |||||||||||||| ||| ||| |||||||| | ||||| |||||||    
T  26094 cgactcaccaatagataaatgcatgctatgttctagactcttctagatgcatgtggtatcataggattccagagataattttaccgt 26008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 1790 - 1704
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacc-tatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  | |||| | ||||||| | |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  1790 gtaagagtacacctcctcttac--aattcatcatatgtaagagtacacctccttttacatttctcatatgactcaatatgactatgatg 1704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 6351 - 6435
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  6351 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 6435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 25519 - 25435
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    ||||||||||||||||||||| | |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  25519 gtaagagtacacatcctcttatgca---caactatgtaaaattacacctccttttacatttctcatatgactcgatatgacaatgatg 25435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 12056 - 12140
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  12056 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 12140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 64040 - 63956
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||| ||| |||||||||| |   || |||||||||| |||||||| ||||||||||| |||| ||||| ||||||| ||||||    
T  64040 gtaagagttcacctcctcttacgca---caactatgtaaaagtacacctccttttacatttcacatatgacttgatatgacgatgatg 63956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 250 - 171
Alignment:
Q  80 accaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||  |||||||||||||||||||| | |   ||  |||||||||||||||||||| ||| |||||||||||||    
T  250 accaagtcacatattcaattatgacacgacttatcttttattcaaatgcatgcaatgttctagactcttctagatgcatg 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 26760 - 26842
Alignment:
Q  77 ttcaccaagtcagttattcaattatgacacgactcaccaactaa-caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||| |||||||  |||||||||||||||    ||| |||| || |||||||||||||||||||| ||| |||||||||||||    
T  26760 ttcatcaagtcacatattcaattatgacatacttcatcaaccaatcaaatgcatgcaatgttctagactcttctagatgcatg 26842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 27820 - 27857
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  27820 caaatgcatgcaatgttctagactcttctagatgcatg 27857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 39816 - 39853
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatg 158  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  39816 caaatgcatgcaatgttctagactcttctagatgcatg 39853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 256083 - 256037
Alignment:
Q  121 caaatgcatgcaatgttctatactattctagatgcatgtagtaccat 167  Q
    |||||||||||||||||||| ||| |||||||||||||  |||||||    
T  256083 caaatgcatgcaatgttctagactcttctagatgcatgcggtaccat 256037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 68120 - 68183
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcata 276  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| ||||    
T  68120 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcata 68183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 9968 - 10052
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  9968 gtaagagtacacctcctcttaccca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 10052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 19393 - 19477
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||  |   || |||||||||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  19393 gtaagagtacacctcctcttaccca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 19477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 1649 - 1565
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||  ||||||||||| |||| ||||  ||||||| ||||||    
T  1649 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctgcttttacatttctcatatgactcgatatgacaatgatg 1565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 106186 - 106102
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcatacgacttaatatgactatgatg 297  Q
    |||||||||||| |||||||||| |   || |||||| ||| |||||||| ||||||||||| |||| ||||  ||||||| ||||||    
T  106186 gtaagagtacacctcctcttacgca---caactatgttaaagtacacctccttttacatttcacatatgactcgatatgacgatgatg 106102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 29724 - 29787
Alignment:
Q  210 gtaagagtacacatcctcttacgtatttcacctatgtaaaaatacacctctttttacatttcgcata 276  Q
    |||||||||||| |||||||||| |   || |||||||||| |||||||| ||||||||||| ||||    
T  29724 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctcattttacatttctcata 29787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University