View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21687_high_4 (Length: 404)
Name: NF21687_high_4
Description: NF21687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21687_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 10159058 - 10158690
Alignment:
| Q |
14 |
atcatcaatcggatcaagagttccggaatcactcctaatgtggtgtcttggactgctttgatatctgggtgttctcaaaacgagaagtacatggacgccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10159058 |
atcatcaatcggatcaagagttccggaatcactcctaatgtggtgtcttggactgctttgatatctgggtgttctcaaaacgagaagtacatggacgccc |
10158959 |
T |
|
| Q |
114 |
taaagattttcagtcaaatgcaagccgagaatgtaaaacctaactcaaccacgatttgcagcttactttgtgcatgtgcaggtccatctctgttgaagaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10158958 |
taaagattttcagtcaaatgcaagccgagaatgtaaaacctaactcaaccacgatttgcagcttactttgtgcatgtgcaggtccatctctgttgaagaa |
10158859 |
T |
|
| Q |
214 |
aggtgaagagttacattgctttagtatgaaactagggtttgtggatgatatatacgttgcaacagcactcattgacatgtatagtgaagcaggaaaacta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10158858 |
aggtgaagagttacattgctttagtatgaaactagggtttgtggatgatatatacgttgcaacagcactcattgacatgtatagtgaagcaggaaaacta |
10158759 |
T |
|
| Q |
314 |
aaagtagcatacaatgttttcaacaaaattcaagagaaaacacttccatgttggaattgcatgatgatg |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10158758 |
aaagtagcatacaatgttttcaacaaaattcaagagaaaacacttccatgttggaattgcatgatgatg |
10158690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University