View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21688_high_1 (Length: 1166)
Name: NF21688_high_1
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_1 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| |
|
| [»] scaffold0187 (1 HSPs) |
| | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 1084; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1084; E-Value: 0
Query Start/End: Original strand, 12 - 1166
Target Start/End: Original strand, 13219260 - 13220415
Alignment:
| Q |
12 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13219260 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttagaagca |
13219359 |
T |
|
| Q |
112 |
catattcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219360 |
catattcctccggggggtagattgggccgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcat |
13219459 |
T |
|
| Q |
212 |
taggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219460 |
taggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactca |
13219559 |
T |
|
| Q |
312 |
tcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgta |
411 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
13219560 |
tcatcaatacattgcaggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgta |
13219659 |
T |
|
| Q |
412 |
ttggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13219660 |
ttggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataatg |
13219759 |
T |
|
| Q |
512 |
atgtccatctca-ttgccgtactcctgagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcatatgggtt |
610 |
Q |
| |
|
||||| || || | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219760 |
atgtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcatatgggtt |
13219859 |
T |
|
| Q |
611 |
cgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattct |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219860 |
cgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattct |
13219959 |
T |
|
| Q |
711 |
ctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatg |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219960 |
ctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatg |
13220059 |
T |
|
| Q |
811 |
cacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttggga |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220060 |
cacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttggga |
13220159 |
T |
|
| Q |
911 |
cgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttca |
1010 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220160 |
cgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttca |
13220259 |
T |
|
| Q |
1011 |
caatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatga |
1110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220260 |
caatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatga |
13220359 |
T |
|
| Q |
1111 |
atagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctact |
1166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220360 |
atagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctact |
13220415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 877 - 978
Target Start/End: Complemental strand, 21660074 - 21659973
Alignment:
| Q |
877 |
gacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattg |
976 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21660074 |
gacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattg |
21659975 |
T |
|
| Q |
977 |
ga |
978 |
Q |
| |
|
|| |
|
|
| T |
21659974 |
ga |
21659973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 13217036 - 13217095
Alignment:
| Q |
12 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13217036 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaa |
13217095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
277 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
329 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
272 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
324 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
345 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
405 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 652; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 16 - 1166
Target Start/End: Complemental strand, 238445 - 237294
Alignment:
| Q |
16 |
catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacata |
115 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
238445 |
catcatttagctattgcatttatttttctcattgccggtcacatgtatcgaactaacttcggaattgggcacagtattaaagatcttttagaagcgcata |
238346 |
T |
|
| Q |
116 |
ttcctccggggggtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattagg |
215 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
238345 |
ctcctccggggggtcgattagggcgtgggcataagggcctttatgacacaatcaacaattcgattcattttcagttaggtcttgctctagcttctttagg |
238246 |
T |
|
| Q |
216 |
ggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcat |
315 |
Q |
| |
|
||| |||||||| || ||||||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
238245 |
ggttattacttccttagtagctcaacatatgtactctttacctccttatgcattcatagcacaagactttactactcaagctgctttatatactcatcac |
238146 |
T |
|
| Q |
316 |
caatacattgcaggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattgg |
415 |
Q |
| |
|
||||| ||||| || || || |||||||||||||||||||||||||| || ||||| ||| | ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
238145 |
caatatattgcggggttcatcatgacaggggcttttgctcatggagctatttttttcattagggattacaatccggaacagaatgaggataatgtattgg |
238046 |
T |
|
| Q |
416 |
caagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgt |
515 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| ||| | || || |
|
|
| T |
238045 |
caagaatgttagaccataaagaagctatcatatctcatttaagttgggctagcctctttctaggattccataccttgggcctttatgttcataacgacgt |
237946 |
T |
|
| Q |
516 |
ccatctca-ttgccgtactcctgagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcatatgggttcgat |
614 |
Q |
| |
|
| || || ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
237945 |
catgcttgcttttggtactccagaaaagcaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggcaagacgacatatgggttcgat |
237846 |
T |
|
| Q |
615 |
gtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctat |
714 |
Q |
| |
|
|||| ||||||||||||||| | || || ||| |||||| |||||| |||||||||| || ||||| |||||| ||||||||||||||||||| || | |
|
|
| T |
237845 |
atactcttatcttcaacgaatggccccgctttcaatgcgggtcgaagcctatggttgcccggatggttgaatgctgttaatgagaatagtaattcgcttt |
237746 |
T |
|
| Q |
715 |
tcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacg |
814 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||| || ||||| |
|
|
| T |
237745 |
tcttaacaataggacctggggatttcttggttcatcatgctattgctctaggtttgcatacaactacattgattttagtaaagggcgctttagacgcacg |
237646 |
T |
|
| Q |
815 |
cggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgca |
914 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||| || || || || || || ||||||||||||||||| |||||||||||| |
|
|
| T |
237645 |
cggttccaaattaatgccggataaaaaggattttgggtatagttttccttgtgacggcccagggcgcggcggtacttgtgatatttctgcttgggacgca |
237546 |
T |
|
| Q |
915 |
ttttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaat |
1014 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||| || |||||||||| |
|
|
| T |
237545 |
ttttatttggcagttttctggatgttaaataccattgggtgggttactttttattggcattggaaacatatcacattatggcagggcaacgtttcacaat |
237446 |
T |
|
| Q |
1015 |
ttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatag |
1114 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
237445 |
ttaatgaatcctccacttatttgatgggatggttaagagattacctatggttaaactcttcacaacttatcaatggatataatccttttgggatgaatag |
237346 |
T |
|
| Q |
1115 |
tttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctact |
1166 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
237345 |
tttatcggtatgggcttggatgttcttatttggacatcttgtttgggctact |
237294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 240669 - 240602
Alignment:
| Q |
16 |
catcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgg |
83 |
Q |
| |
|
||||||||||||||||| |||||||| || || || |||||||||||||| || |||| |||||||| |
|
|
| T |
240669 |
catcatttagctattgctattcttttcctaatcgcaggtcatatgtataggaccaactggggtattgg |
240602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 545 - 1121
Target Start/End: Original strand, 30215 - 30792
Alignment:
| Q |
545 |
aatcttgatcgaacctatatttgccc-aatggatacaatctgctcatggtaaaacttcatatgggttcgatgtacttttatcttcaacgaatagtccggc |
643 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30215 |
aatcttgatcgaacctatatttgccccaatggatacaatctgctcatggtaaaacttcatatgggtacgatgtacttttatcttcaacgaatagtccggc |
30314 |
T |
|
| Q |
644 |
gctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
743 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315 |
gctcagtgcggggcgaagcatatggtttcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
30414 |
T |
|
| Q |
744 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaagg |
843 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctctggatgcacgcggttccaagttaatgccggataaaaagg |
30514 |
T |
|
| Q |
844 |
attttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaa |
943 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30515 |
attttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcaattttctggatgttaaa |
30614 |
T |
|
| Q |
944 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
1043 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30615 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
30714 |
T |
|
| Q |
1044 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
1121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30715 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
30792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 545 - 1121
Target Start/End: Complemental strand, 37908862 - 37908285
Alignment:
| Q |
545 |
aatcttgatcgaacctatatttgccc-aatggatacaatctgctcatggtaaaacttcatatgggttcgatgtacttttatcttcaacgaatagtccggc |
643 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37908862 |
aatcttgatcgaacctatatttgccccaatggatacaatctgctcatggtaaaacttcatatgggtacgatgtacttttatcttcaacgaatagtccggc |
37908763 |
T |
|
| Q |
644 |
gctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
743 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908762 |
gctcagtgcggggcgaagcatatggtttcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
37908663 |
T |
|
| Q |
744 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaagg |
843 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908662 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctctggatgcacgcggttccaagttaatgccggataaaaagg |
37908563 |
T |
|
| Q |
844 |
attttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaa |
943 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37908562 |
attttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcaattttctggatgttaaa |
37908463 |
T |
|
| Q |
944 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
1043 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908462 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
37908363 |
T |
|
| Q |
1044 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
1121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908362 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
37908285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 39386263 - 39386308
Alignment:
| Q |
12 |
acatcatcatttagctattgcaattctttttctcattgctggtcat |
57 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
39386263 |
acatcatcatttagctattgtaattctttttcgcattgccggtcat |
39386308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 905 - 1166
Target Start/End: Complemental strand, 43025981 - 43025720
Alignment:
| Q |
905 |
ttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaat |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025981 |
ttgggacgcattttatttggcagttttctggatgttaaataccattggatgagttactttttattggcattggaagcacattacattatggcagggtaat |
43025882 |
T |
|
| Q |
1005 |
gtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttg |
1104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025881 |
gtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttg |
43025782 |
T |
|
| Q |
1105 |
gtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctact |
1166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025781 |
gtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctact |
43025720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 173 - 515
Target Start/End: Original strand, 10996334 - 10996673
Alignment:
| Q |
173 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
10996334 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttacctacttatgcgtttat |
10996433 |
T |
|
| Q |
273 |
agcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatatttttt |
372 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||| ||||| |
|
|
| T |
10996434 |
agcgcaagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgata-ttttt |
10996532 |
T |
|
| Q |
373 |
attcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctat |
472 |
Q |
| |
|
||| | ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
10996533 |
atttgagattacaatcccgaacataatgagaataatgtattggca--gatgttagagcacaaagaagctatcatatcccatttaagttgagccatcctat |
10996630 |
T |
|
| Q |
473 |
ttctggggttccatactttgggactttatgtccatgatgatgt |
515 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10996631 |
ttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
288 |
tactcaagctgcgttatatactcatcatcaatacattgc |
326 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 1e-72; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 1e-72
Query Start/End: Original strand, 724 - 871
Target Start/End: Original strand, 18045181 - 18045328
Alignment:
| Q |
724 |
taggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaa |
823 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18045181 |
taggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcatgcggttccaa |
18045280 |
T |
|
| Q |
824 |
gttaatgccggataaaaaggattttggttatagttttccttgcgatgg |
871 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045281 |
gttaatgtcggataaaaaggattttggttatagttttccttgcgatgg |
18045328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 812 - 946
Target Start/End: Complemental strand, 35070232 - 35070099
Alignment:
| Q |
812 |
acgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggac |
911 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||| ||||||||||| ||||||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
35070232 |
acgcagttccaagttaatggttgataaaatggattttgattatagttttctttgcgatagtttgg-atgaggtggtacttgtgatatttcggcttgggac |
35070134 |
T |
|
| Q |
912 |
gcattttatttggcagttttctggatgttaaatac |
946 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||| |
|
|
| T |
35070133 |
acaatttatttggcagtcttttggatgttaaatac |
35070099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 812 - 946
Target Start/End: Complemental strand, 35096278 - 35096145
Alignment:
| Q |
812 |
acgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggac |
911 |
Q |
| |
|
|||| |||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
35096278 |
acgcagttccaagctaatggttgataaaatggattttggttatagttttctttgagatagtttgg-atgaggtggtacttgtgatatttcggcttgggac |
35096180 |
T |
|
| Q |
912 |
gcattttatttggcagttttctggatgttaaatac |
946 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||| |
|
|
| T |
35096179 |
acaatttatttggcagtcttttggatgttaaatac |
35096145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 14541411 - 14541323
Alignment:
| Q |
15 |
tcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattt |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||| || |||||||||| |||| |
|
|
| T |
14541411 |
tcatcattttgctattgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatattt |
14541323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 930
Target Start/End: Original strand, 48364288 - 48364334
Alignment:
| Q |
884 |
tggtacttgtgatatttcggcttgggacgcattttatttggcagttt |
930 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
48364288 |
tggtacttatgatatttcggtttgggatgcattttatttggcagttt |
48364334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 32566683 - 32566650
Alignment:
| Q |
215 |
gggtcattacttctttggtagctcaacacatgta |
248 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
32566683 |
gggtcattacttctttggtagctcaatacatgta |
32566650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 767 - 932
Target Start/End: Original strand, 7243484 - 7243649
Alignment:
| Q |
767 |
tttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgc |
866 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||| || || ||||| |||| ||||| |
|
|
| T |
7243484 |
tttacatacaactacattgatattagtaaacggtgctttggatgcacacagttccaagttaatgccggataaaaagatttatgattataatttttcttgc |
7243583 |
T |
|
| Q |
867 |
gatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttc |
932 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7243584 |
gatggtccgagacaaggtggtacttgtgatatttcggcttgggatgcattttatttggtagttttc |
7243649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 7e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 655 - 744
Target Start/End: Original strand, 29443212 - 29443301
Alignment:
| Q |
655 |
ggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttgg |
744 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443212 |
ggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttgg |
29443301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 18177058 - 18176963
Alignment:
| Q |
12 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttaga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || |||||| ||| |||||||| |
|
|
| T |
18177058 |
acatcatcatttagctattgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga |
18176963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
288 |
tactcaagctgcgttatatactcatcatcaatacattgc |
326 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 8e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 774 - 846
Target Start/End: Complemental strand, 38363089 - 38363017
Alignment:
| Q |
774 |
acaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaaggatt |
846 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
38363089 |
acaagtacattgatcttagtaaaatgtgctttggatgtacgcagttccaagttaacgccggataaaaaggatt |
38363017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 39047942 - 39048001
Alignment:
| Q |
12 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
39047942 |
acatcatcatttagctattgcaattctttttctcattaccggtcatatgtatagaactaa |
39048001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 41602085 - 41602027
Alignment:
| Q |
537 |
gagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaa |
595 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
41602085 |
gagaaacaaatcttgatcgatcctatatttgtccaatggatacaatatgcttatggtaa |
41602027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 15664 - 15723
Alignment:
| Q |
12 |
acatcatcatttagctattgcaattctttttctcattgctggtcatatgtatagaactaa |
71 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
15664 |
acatcatcatctagctattgcaattctttttcacattgccagtcatatgtatagaactaa |
15723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University