View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21688_high_2 (Length: 609)
Name: NF21688_high_2
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 36 - 590
Target Start/End: Complemental strand, 40088760 - 40088206
Alignment:
| Q |
36 |
ttcccattcccaaaacacaaaaactcattcacannnnnnncttctatcaatagctcatttaaaaccaaatccaccgcatcatggcggcgtcacggcggct |
135 |
Q |
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| T |
40088760 |
ttcccattcccaaaacacaaaaactcattcacatttttttcttcaatcaattgctcatttaaaaccaaatccaccgcatcatggcggcgtcacggcggct |
40088661 |
T |
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| Q |
136 |
ccgtgaacttcaatccgaaccctcaaacaagatctgcgtagactgttcccnnnnnnntccacaatgggcctccgtttcctacggcgttttcatgtgtctc |
235 |
Q |
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| T |
40088660 |
ccgtgaacttcaatccgaaccctcaaacaagatctgcgtcgactgttcccaaaaaaatccacaatgggcctccgtttcctacggcgttttcatgtgtctc |
40088561 |
T |
|
| Q |
236 |
gaatgctccggcaaacaccgtggcctcggcgttcacatctctttcgtccgatccgttacaatggattcatggtctgatctccagatcaagaaaatggaag |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40088560 |
gaatgctccggcaaacaccgtggcctcggcgttcacatctctttcgtccgatccgttacaatggattcatggtctgatctccagatcaagaaaatggaag |
40088461 |
T |
|
| Q |
336 |
ccggtggtaaccgcaatctcaacacgttcctttctcaatacggaatctctaaggaaactgatatcatcaccaagtataattcaaacgctgcttcgatcta |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40088460 |
ccggtggtaaccgcaatctcaacacgttcctttctcaatacggaatctctaaggaaactgatatcatcaccaagtataattcaaacgctgcttcgatcta |
40088361 |
T |
|
| Q |
436 |
ccgcgatcgcattcaagctatcgcagaaggtcgttcgtggcgtgatccacctgttgttaaggagaatgctagtactcgtgctggaaaaggaaagccacct |
535 |
Q |
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| T |
40088360 |
ccgcgaccgcattcaagctatcgcagaaggtcgttcgtggcgcgatccacctgttgttaaggagaatgctagtactcgtgctggaaaaggaaagccacct |
40088261 |
T |
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| Q |
536 |
ctggctgctgcgtcgaatggtggtggttgggatgataattgggataatgatgatg |
590 |
Q |
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| T |
40088260 |
ctggctgctgcgtcgaatggtggtggttgggatgataattgggataatgatgatg |
40088206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 115 - 502
Target Start/End: Original strand, 29556959 - 29557346
Alignment:
| Q |
115 |
catggcggcgtcacggcggctccgtgaacttcaatccgaaccctcaaacaagatctgcgtagactgttcccnnnnnnntccacaatgggcctccgtttcc |
214 |
Q |
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||||||||| |||||||||||||| || || |||||| |||| |||||||||||||| || || || | |||||| ||||| || || ||| |
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| T |
29556959 |
catggcggcatcacggcggctccgggacctccaatcccaacctggcaacaagatctgcgtcgattgctctcagaagaatccacagtgggcatcagtctcc |
29557058 |
T |
|
| Q |
215 |
tacggcgttttcatgtgtctcgaatgctccggcaaacaccgtggcctcggcgttcacatctctttcgtccgatccgttacaatggattcatggtctgatc |
314 |
Q |
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| T |
29557059 |
tacggcatcttcatgtgcttagaatgctccggcaaacaccgtggtctcggcgttcacatctccttcgtccgatccgtcaccatggatgcttggtccgaaa |
29557158 |
T |
|
| Q |
315 |
tccagatcaagaaaatggaagccggtggtaaccgcaatctcaacacgttcctttctcaatacggaatctctaaggaaactgatatcatcaccaagtataa |
414 |
Q |
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| || ||||||||||||||||| |||||||| |||||||||| | |||||| | | || ||| | |||||||| ||||| | ||||||||||| |
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| T |
29557159 |
ttcaaatcaagaaaatggaagctggtggtaatgacaatctcaacgctttccttgccaagtattcaattccgaaggaaacggatattgttaccaagtataa |
29557258 |
T |
|
| Q |
415 |
ttcaaacgctgcttcgatctaccgcgatcgcattcaagctatcgcagaaggtcgttcgtggcgtgatccacctgttgttaaggagaat |
502 |
Q |
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| |||||||||||| | || || ||||| ||||| ||| | | |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
29557259 |
caccaacgctgcttcggtatatcgtgatcggattcaggctttgtcggaaggtcggtcgtggcgtgatccaccggttgttaaggagaat |
29557346 |
T |
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