View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21688_high_3 (Length: 600)
Name: NF21688_high_3
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 149 - 588
Target Start/End: Original strand, 22016398 - 22016815
Alignment:
| Q |
149 |
gcttcctctagtatctttgttgtgctggtgtgaagagtgtgttttgactttagtttcacatcctctagaaatatggctttaatagtctcccttaatggct |
248 |
Q |
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| T |
22016398 |
gcttcctctagtatctttgttgtgctggtgtgaagagtgtgttttgactttagtttcacatcatctagaaata----------------------tggct |
22016475 |
T |
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| Q |
249 |
ttaatagtgctataataattttgccattctgcacatttgtgtttattaatcaaggagtgtaacatagccactttgctacacttctaactttggatttgct |
348 |
Q |
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| T |
22016476 |
ttaatagtgctataataattttgccattctgcacatttgtgtttattaatcaaggagtgtaacatagccactttgctacacttctaactttggatttgct |
22016575 |
T |
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| Q |
349 |
ataaggttacttttgtaagtgctgctttgtgatgacttagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacg |
448 |
Q |
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| T |
22016576 |
ataaggttacttttgtaagtgctgctttgtgatgacttagcatagtgaatttgaaattatctcttactatgcaattcctgatcgatttttgtgttctacg |
22016675 |
T |
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| Q |
449 |
ctatttaccgaagcctcctcagatgaattgtctggatgaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgt |
548 |
Q |
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| T |
22016676 |
ctatttaccgaagcctcctcagatgaattgtctggatgaaattcaaccttattgtgaagagcaagcaaaagatgatctatccatggtagaaactgaacgt |
22016775 |
T |
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| Q |
549 |
aatgaagggacagataataatgaaaataatgctgatgatg |
588 |
Q |
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| T |
22016776 |
aatgaagggaaagataataatgaaaataatgctgatgatg |
22016815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 22016230 - 22016363
Alignment:
| Q |
22 |
tttatgacaggttttgat---tgtagttaagcccactagtaagaaaaggttttgttgttgttcagttgttttccctcctagcatatacataccgtgttgg |
118 |
Q |
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|||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
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| T |
22016230 |
tttaagacaggttttgatggctgtagttaagccgactagtgagaaaaggttttgttgttgttcagttgttttccctcctagcatgtacgtactgtgttgg |
22016329 |
T |
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| Q |
119 |
-aaaagctgcctgagtttcaatccacctctagct |
151 |
Q |
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| T |
22016330 |
aaaaagctgcctgagtttcaatccacctctagct |
22016363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 552 - 586
Target Start/End: Original strand, 22016830 - 22016864
Alignment:
| Q |
552 |
gaagggacagataataatgaaaataatgctgatga |
586 |
Q |
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| T |
22016830 |
gaagggacagataataatgaaaataatgctgatga |
22016864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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