View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21688_high_4 (Length: 550)
Name: NF21688_high_4
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 312 - 550
Target Start/End: Complemental strand, 38970899 - 38970661
Alignment:
| Q |
312 |
gtcagtgatttcatggacgttgttcagcgtctcaccggaccttccgccggcgaagaagcacctcaacaatccggcgcagtttctccggcggcgagactcg |
411 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38970899 |
gtcagtgacttcatggacgttgttcagcgtctcaccggaccttccgccggcgaagaagcacctcaacaatccggcgcagtttctccggcggcgagactcg |
38970800 |
T |
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| Q |
412 |
cttccatagagagaacaagtccaacagagagagaaaggattcaacaaaccgtagacgaagatttaacgtggttgttagaaggagttgaaatgggtccgtt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38970799 |
cttccatagagagaacaagtccaacagagagagaaaggattcaacaaaccgtagacgaagatttaacgtggttgttagaaggagttgaaatgggtcagtt |
38970700 |
T |
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| Q |
512 |
tccggggatattatctccggcaccggcgactctaccacc |
550 |
Q |
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| T |
38970699 |
tccggggatattatctccggcaccggcgactctaccacc |
38970661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 312 - 550
Target Start/End: Complemental strand, 39001997 - 39001759
Alignment:
| Q |
312 |
gtcagtgatttcatggacgttgttcagcgtctcaccggaccttccgccggcgaagaagcacctcaacaatccggcgcagtttctccggcggcgagactcg |
411 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39001997 |
gtcagtgacttcatggacgttgttcagcgtctcaccggaccttccgccggcgaagaagcacctcaacaatccggcgcagtttctccggcggcgagactcg |
39001898 |
T |
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| Q |
412 |
cttccatagagagaacaagtccaacagagagagaaaggattcaacaaaccgtagacgaagatttaacgtggttgttagaaggagttgaaatgggtccgtt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39001897 |
cttccatagagagaacaagtccaacagagagagaaaggattcaacaaaccgtagacgaagatttaacgtggttgttagaaggagttgaaatgggtcagtt |
39001798 |
T |
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| Q |
512 |
tccggggatattatctccggcaccggcgactctaccacc |
550 |
Q |
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| T |
39001797 |
tccggggatattatctccggcaccggcgactctaccacc |
39001759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
| Q |
30 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
130 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
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| Q |
230 |
atgtgaatttgtgcagatgatatcactgac |
259 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34899775 |
atgtgaatttgtgcagatgatatcactgac |
34899746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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