View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21688_high_5 (Length: 518)
Name: NF21688_high_5
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 10 - 495
Target Start/End: Original strand, 3376870 - 3377355
Alignment:
| Q |
10 |
ggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgttaatgtc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3376870 |
ggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgatgttaatgtc |
3376969 |
T |
|
| Q |
110 |
aatggccatgttgatccttcaaagactagcttcatggagaatgatgatggcattgatttacacaaaccaaagttggatcatatgattattgaggacggat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3376970 |
aatggccatgttgatccttcaaagactagcttcatggagaatgatgatggtattgatttacacaaaccaaagttggatcatatgattattgaggacggat |
3377069 |
T |
|
| Q |
210 |
caaatgacttaaatctcaatgttgaagttttaaattttgatgattgtaaagtggtgtcttcatttaagaagccattgcaagaaaagcaagaggcgatgga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3377070 |
caaatgacttaaatctcaatgttgaagttttaaattttgatgattgtaaagtggtgtcttcatttaagaagccattgcaagagaagcaagaggcgatgga |
3377169 |
T |
|
| Q |
310 |
tgctaaaagattcttttttgaggaaaagtatataagtgataatgttgtgaatttcaagattgccccttatgagaagaaggaaaaagtagtgttgtatttc |
409 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3377170 |
tgctaaaagattcttttttgaggaaaagaatattagtgataatgttgtgaatttcaagattgccccttatgagaagaaggaaaaagcagtgttgtatttc |
3377269 |
T |
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| Q |
410 |
acaagtctacgtatggtgagaaaaacttatgaggattgttgcaaagttaggatggttttgaaaggattaggcataagggttgatga |
495 |
Q |
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| T |
3377270 |
acaagtctgcgtatggtgagaaaaacttatgaggattgttgcatagttaggatggttttgaaaggattaggcataagggttgatga |
3377355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 154 - 495
Target Start/End: Original strand, 21361616 - 21361963
Alignment:
| Q |
154 |
tgatggcattgatttacacaaaccaaagttggatcatatgattattgaggacggatcaaatgacttaaatctcaatgttgaagttttaaattttgatgat |
253 |
Q |
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||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21361616 |
tgatgacattgatttacacaaaccaaaggtgcatcatatgattattgaggacagatcaaatgacttaaatctcaatgttaaagttttaaattttgatgat |
21361715 |
T |
|
| Q |
254 |
tgtaaagtggtgtcttcatttaagaagccattgcaagaaaagcaagaggcgatggatgctaaaagattctttt---ttgaggaaaagtatataagtgata |
350 |
Q |
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| T |
21361716 |
tgtaaagtgatgtcttcattcaagaagtcattgcaagagaagcaagaggggatggatacaaaaaaaaaaaaaaaaattgaggaaaagaatattattgata |
21361815 |
T |
|
| Q |
351 |
atgtt---gtgaatttcaagattgccccttatgagaagaaggaaaaagtagtgttgtatttcacaagtctacgtatggtgagaaaaacttatgaggattg |
447 |
Q |
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| T |
21361816 |
atgttgttgtgaatttcaagattgccccttatgagaagaaggaaaaagtggtgttgtatttcacaagcctacgcatggtgagaaaaacttatgagaattg |
21361915 |
T |
|
| Q |
448 |
ttgcaaagttaggatggttttgaaaggattaggcataagggttgatga |
495 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21361916 |
ttgcaaagttaggatgattttgaaaggattaggcataagggttgatga |
21361963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 45765487 - 45765320
Alignment:
| Q |
113 |
ggccatgttgatccttcaaagactagcttcatggagaatgatgatggcattgatttacacaaaccaaagttggatcatatgattattgaggacggatcaa |
212 |
Q |
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|||||| ||||||| | |||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45765487 |
ggccatattgatccgttaaagcctaatttcatggagaatgatgacgacattgatttacacaaaccaaagttggatcatatgattattgaaaacggatcaa |
45765388 |
T |
|
| Q |
213 |
atgacttaaatctcaatgttgaagttttaaa-ttttgatgattgtaaagtggtgtcttcatttaagaag |
280 |
Q |
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||||||||||||| || |||||||||||||| ||||| ||||||||||| | ||| |||||| |||||| |
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| T |
45765387 |
atgacttaaatctgaa-gttgaagttttaaatttttggtgattgtaaagggatgttttcattcaagaag |
45765320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 45765303 - 45765213
Alignment:
| Q |
405 |
atttcacaagtctacgtatggtgagaaaaacttatgaggattgttgcaaagttaggatggttttgaaaggattaggcataagggttgatga |
495 |
Q |
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| T |
45765303 |
atttcacaagcctacgtatggtgagataaacttatgaggattgttacaaagttaggatgattttgaaaggattaggcataagggttgatga |
45765213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 407 - 491
Target Start/End: Complemental strand, 9666278 - 9666194
Alignment:
| Q |
407 |
ttcacaagtctacgtatggtgagaaaaacttatgaggattgttgcaaagttaggatggttttgaaaggattaggcataagggttg |
491 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9666278 |
ttcacaacactacgtatggtgagaaaaccttatgaggattgttgcaaagttaggatgattttgaaaggattaggcataagggttg |
9666194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 9667106 - 9667037
Alignment:
| Q |
352 |
tgttgtgaatttcaagattgccccttatgagaagaaggaaaaagtagtgttgtatttcacaagtctacgt |
421 |
Q |
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| T |
9667106 |
tgttgtgaatttcaagattgcctcttatgagaagaaggaaaaagtggtgttgtattttacaagcctacgt |
9667037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 2372397 - 2372487
Alignment:
| Q |
17 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgttaatg |
107 |
Q |
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||||||||||||||| |||||||||| |||||||||| |||||||||| ||| || ||||| || | ||| || ||||||||||| |||| |
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| T |
2372397 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtcaatg |
2372487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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