View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21688_high_6 (Length: 516)
Name: NF21688_high_6
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 24 - 481
Target Start/End: Original strand, 3376561 - 3377018
Alignment:
| Q |
24 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
123 |
Q |
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| T |
3376561 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
3376660 |
T |
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| Q |
124 |
ggttttgttccatattcgactttgctcaaagcagacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
223 |
Q |
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| T |
3376661 |
ggttttgttccatattcgactttgctcaaagcaaacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
3376760 |
T |
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| Q |
224 |
agaattccaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
323 |
Q |
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| T |
3376761 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
3376860 |
T |
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| Q |
324 |
accttgtgaggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgat |
423 |
Q |
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| T |
3376861 |
accttgtgaggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgat |
3376960 |
T |
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| Q |
424 |
gttaatgtcaatggccatgttgatccttcaaagactagcttcatggagaatgatgatg |
481 |
Q |
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| T |
3376961 |
gttaatgtcaatggccatgttgatccttcaaagactagcttcatggagaatgatgatg |
3377018 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 2372397 - 2372487
Alignment:
| Q |
340 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgttaatg |
430 |
Q |
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||||||||||||||| |||||||||| |||||||||| |||||||||| ||| || ||||| || | ||| || ||||||||||| |||| |
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| T |
2372397 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtcaatg |
2372487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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