View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21688_high_8 (Length: 368)
Name: NF21688_high_8
Description: NF21688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21688_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 25720349 - 25720684
Alignment:
| Q |
25 |
tcatcaatcaaaggtaatattttcttatggttcaattcttcgacgacacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
124 |
Q |
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|||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25720349 |
tcattaatcaaaggtaatattgtcttatggttcaattcttggacggcacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
25720448 |
T |
|
| Q |
125 |
tgttatagtgctaagctttgcgttgaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaa |
224 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25720449 |
tgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaa |
25720548 |
T |
|
| Q |
225 |
cattatagcttgaattggtttaaatttagtagagttgaagttctctaactgagtaattgaatgatgattttaggaatcccaatagatttaatgattaaac |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25720549 |
cattatagcttgaattggtttaaatttagtagagttgaagttctctaattgagtaattgaatgatgattttaggaatcccaatagatttaatgattaaac |
25720648 |
T |
|
| Q |
325 |
tatgtctattacctttgaatactatatttgattcta |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25720649 |
tatgtctattacctttgaatactatatttgattcta |
25720684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 1478780 - 1478896
Alignment:
| Q |
126 |
gttatagtgctaagctttgcgttgaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaac |
225 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1478780 |
gttatagtgctaagctttgcattgaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaac |
1478879 |
T |
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| Q |
226 |
attatagcttgaattgg |
242 |
Q |
| |
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||||||||||||||||| |
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| T |
1478880 |
attatagcttgaattgg |
1478896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 25 - 360
Target Start/End: Original strand, 29686346 - 29686681
Alignment:
| Q |
25 |
tcatcaatcaaaggtaatattttcttatggttcaattcttcgacgacacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29686346 |
tcatcaatcaaaggtaatattttcttatggttcaattcttagacgacacatttgactgttgctttgtctgaatgcatcgtttctattagttgttgatctt |
29686445 |
T |
|
| Q |
125 |
tgttatagtgctaagctttgcgttgaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttcttttctttgaaaaaa |
224 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29686446 |
tgttatagtgctaagctttgcgttaaagatattcactttctagcagttgtttaggttgtgttctattgacaatgaacttattttcttttctttgaaaaaa |
29686545 |
T |
|
| Q |
225 |
cattatagcttgaattggtttaaatttagtagagttgaagttctctaactgagtaattgaatgatgattttaggaatcccaatagatttaatgattaaac |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29686546 |
cattatagcttgaattggtttaaatttagtagagttgaagttctctaattgagtaattgaatgataattttaggaatcccaatagatttaatgattaaac |
29686645 |
T |
|
| Q |
325 |
tatgtctattacctttgaatactatatttgattcta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
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| T |
29686646 |
tatgtctattacctttgaatactatattagattcta |
29686681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 2078979 - 2079212
Alignment:
| Q |
25 |
tcatcaatcaaaggtaatattttcttatggttcaattcttcgacgaca-----------catttgactgttgctttgtctgaatgcatcgtttctattag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||||||||||||||||||||| ||||||| |
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| T |
2078979 |
tcatcaatcaaaggtaatattttcttatgattcaattcttctacggcaatgtgttgtaacatttggctgttgctttgtctgaatgcatcgttactattag |
2079078 |
T |
|
| Q |
114 |
ttgttgatctttgttatagtgctaagctttgcgttgaagatattcactttctagcagttgtttaggttgtgttctattggcaatgaacttattttctttt |
213 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2079079 |
ttgttgatctatgttatagtgctaagctttgcattgaagatattcagtttctagccgttgattaggttgtgttctattggcaatgaacttattttctttt |
2079178 |
T |
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| Q |
214 |
c-----tttgaaaaaacattatagcttgaattgg |
242 |
Q |
| |
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| |||||||||||||||||||||||||||| |
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| T |
2079179 |
cctttttttgaaaaaacattatagcttgaattgg |
2079212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 1263077 - 1263142
Alignment:
| Q |
277 |
gtaattgaatgatgattttaggaatcccaatagatttaatgattaaactatgtctattacctttga |
342 |
Q |
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|||||||||||||||||||||| | | |||||||||||||||||||||||||| | ||||||||| |
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| T |
1263077 |
gtaattgaatgatgattttagggacctcaatagatttaatgattaaactatgttttatacctttga |
1263142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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