View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21689_high_1 (Length: 382)

Name: NF21689_high_1
Description: NF21689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21689_high_1
NF21689_high_1
[»] chr4 (49 HSPs)
chr4 (24-368)||(40293415-40293759)
chr4 (135-235)||(6942480-6942580)
chr4 (139-232)||(17354464-17354557)
chr4 (136-237)||(48818485-48818586)
chr4 (136-208)||(27574587-27574659)
chr4 (144-209)||(6942259-6942324)
chr4 (140-232)||(19594457-19594549)
chr4 (136-202)||(2075184-2075250)
chr4 (136-210)||(33977801-33977875)
chr4 (28-99)||(38160191-38160262)
chr4 (29-99)||(49448838-49448908)
chr4 (152-212)||(42600688-42600748)
chr4 (136-203)||(7162239-7162306)
chr4 (28-99)||(22872427-22872498)
chr4 (144-206)||(2720532-2720594)
chr4 (157-233)||(20919746-20919822)
chr4 (31-99)||(47846896-47846964)
chr4 (34-96)||(4360453-4360515)
chr4 (31-97)||(37309697-37309763)
chr4 (31-97)||(38976990-38977056)
chr4 (145-191)||(39835716-39835762)
chr4 (31-97)||(42185838-42185904)
chr4 (31-97)||(42544208-42544274)
chr4 (31-77)||(50328113-50328159)
chr4 (30-99)||(22020551-22020620)
chr4 (30-99)||(38319908-38319977)
chr4 (30-99)||(47277723-47277792)
chr4 (31-99)||(17237040-17237108)
chr4 (31-99)||(41436478-41436546)
chr4 (31-99)||(51572270-51572338)
chr4 (146-210)||(2324153-2324212)
chr4 (135-222)||(30617553-30617640)
chr4 (30-97)||(35998158-35998225)
chr4 (34-97)||(41203736-41203799)
chr4 (29-99)||(25250633-25250703)
chr4 (31-97)||(26799258-26799324)
chr4 (31-97)||(29644354-29644420)
chr4 (31-97)||(41710186-41710252)
chr4 (31-97)||(48740519-48740585)
chr4 (31-97)||(49306586-49306652)
chr4 (136-202)||(54612631-54612696)
chr4 (31-97)||(54729526-54729591)
chr4 (52-97)||(22496740-22496785)
chr4 (137-229)||(45891848-45891941)
chr4 (54-99)||(51076479-51076524)
chr4 (135-208)||(51164529-51164602)
chr4 (26-83)||(52677068-52677125)
chr4 (30-99)||(55360389-55360458)
chr4 (246-274)||(37316045-37316073)
[»] chr8 (36 HSPs)
chr8 (120-232)||(33274283-33274395)
chr8 (132-235)||(12892632-12892735)
chr8 (135-214)||(40330132-40330211)
chr8 (144-237)||(18310546-18310642)
chr8 (144-233)||(30928835-30928924)
chr8 (144-237)||(23736976-23737073)
chr8 (144-210)||(404423-404488)
chr8 (132-209)||(12398093-12398171)
chr8 (26-99)||(27868362-27868435)
chr8 (30-99)||(32679032-32679101)
chr8 (28-88)||(5423203-5423263)
chr8 (135-191)||(39400958-39401014)
chr8 (28-99)||(27987655-27987726)
chr8 (28-99)||(28044957-28045028)
chr8 (28-99)||(42412422-42412493)
chr8 (31-97)||(32967319-32967385)
chr8 (31-97)||(45425484-45425550)
chr8 (30-99)||(886489-886558)
chr8 (30-99)||(2195465-2195534)
chr8 (140-209)||(5297968-5298037)
chr8 (26-99)||(7258404-7258477)
chr8 (30-99)||(10728963-10729032)
chr8 (30-99)||(14748747-14748816)
chr8 (54-99)||(33826228-33826273)
chr8 (24-99)||(3442480-3442555)
chr8 (31-97)||(4274341-4274407)
chr8 (31-97)||(5392048-5392114)
chr8 (31-97)||(22490390-22490456)
chr8 (31-97)||(28802766-28802832)
chr8 (31-97)||(39171542-39171608)
chr8 (31-93)||(42558623-42558685)
chr8 (31-97)||(44790464-44790530)
chr8 (30-99)||(8418343-8418412)
chr8 (27-83)||(26570190-26570246)
chr8 (33-97)||(29615797-29615861)
chr8 (33-97)||(38252482-38252546)
[»] chr1 (59 HSPs)
chr1 (120-212)||(10987194-10987286)
chr1 (120-215)||(35652475-35652570)
chr1 (132-237)||(36438414-36438519)
chr1 (120-192)||(30321986-30322058)
chr1 (135-232)||(13383008-13383105)
chr1 (132-206)||(47949991-47950065)
chr1 (144-232)||(10101205-10101298)
chr1 (135-232)||(12570080-12570177)
chr1 (136-209)||(11908573-11908646)
chr1 (145-237)||(47176774-47176867)
chr1 (153-237)||(47449226-47449310)
chr1 (133-196)||(21008226-21008289)
chr1 (120-199)||(47445992-47446071)
chr1 (28-98)||(17342826-17342896)
chr1 (135-205)||(50075618-50075688)
chr1 (132-233)||(46288769-46288870)
chr1 (136-205)||(23452959-23453026)
chr1 (120-205)||(7789446-7789530)
chr1 (138-230)||(30058432-30058522)
chr1 (159-217)||(1607393-1607451)
chr1 (31-97)||(7785317-7785383)
chr1 (26-96)||(34813917-34813987)
chr1 (147-233)||(44487612-44487698)
chr1 (155-232)||(14149446-14149523)
chr1 (28-97)||(32587764-32587833)
chr1 (28-97)||(45889288-45889357)
chr1 (135-228)||(38081570-38081665)
chr1 (28-99)||(40019756-40019827)
chr1 (31-97)||(8327716-8327782)
chr1 (135-205)||(10657995-10658065)
chr1 (135-205)||(24439125-24439195)
chr1 (31-97)||(28277081-28277147)
chr1 (31-97)||(48242633-48242699)
chr1 (144-212)||(2355458-2355527)
chr1 (30-99)||(29225750-29225819)
chr1 (31-96)||(46536340-46536405)
chr1 (28-97)||(50267478-50267547)
chr1 (28-97)||(51749223-51749292)
chr1 (27-99)||(10587620-10587692)
chr1 (31-99)||(13500772-13500840)
chr1 (28-92)||(27831850-27831914)
chr1 (170-230)||(39416954-39417014)
chr1 (199-237)||(2930110-2930148)
chr1 (31-97)||(3555598-3555664)
chr1 (26-96)||(3718887-3718957)
chr1 (31-97)||(26755975-26756041)
chr1 (31-97)||(28839338-28839404)
chr1 (146-208)||(28924046-28924108)
chr1 (136-230)||(34967700-34967794)
chr1 (30-99)||(2886168-2886237)
chr1 (152-232)||(8890676-8890757)
chr1 (30-95)||(33149274-33149339)
chr1 (30-99)||(39420581-39420650)
chr1 (28-97)||(46496017-46496086)
chr1 (30-99)||(52382428-52382497)
chr1 (31-95)||(21304385-21304449)
chr1 (246-274)||(27932963-27932991)
chr1 (138-214)||(30513821-30513897)
chr1 (27-99)||(40061806-40061878)
[»] chr2 (59 HSPs)
chr2 (144-237)||(43592736-43592829)
chr2 (146-237)||(9886812-9886903)
chr2 (135-234)||(11252602-11252701)
chr2 (132-230)||(4283456-4283554)
chr2 (138-212)||(9707121-9707195)
chr2 (120-217)||(43664819-43664916)
chr2 (135-232)||(35813764-35813862)
chr2 (174-237)||(433649-433712)
chr2 (144-235)||(30560935-30561026)
chr2 (136-210)||(8335263-8335337)
chr2 (135-197)||(28226206-28226268)
chr2 (144-209)||(7721621-7721686)
chr2 (31-97)||(23684958-23685024)
chr2 (31-97)||(28301433-28301499)
chr2 (140-202)||(38554112-38554174)
chr2 (31-97)||(41436078-41436144)
chr2 (29-99)||(44424303-44424373)
chr2 (28-97)||(8031740-8031809)
chr2 (168-237)||(33441823-33441892)
chr2 (29-99)||(4794570-4794640)
chr2 (120-174)||(33440858-33440912)
chr2 (31-95)||(435120-435184)
chr2 (120-212)||(5578032-5578124)
chr2 (139-182)||(433483-433526)
chr2 (147-210)||(3369957-3370020)
chr2 (135-192)||(13915892-13915950)
chr2 (31-97)||(28108417-28108483)
chr2 (31-97)||(37247926-37247992)
chr2 (138-191)||(1687971-1688024)
chr2 (27-99)||(19515878-19515950)
chr2 (30-90)||(29937955-29938015)
chr2 (33-97)||(43077770-43077834)
chr2 (28-99)||(8550681-8550752)
chr2 (28-95)||(10069624-10069691)
chr2 (31-97)||(13375231-13375298)
chr2 (24-99)||(14384313-14384388)
chr2 (143-230)||(15996700-15996787)
chr2 (31-97)||(7650017-7650083)
chr2 (31-97)||(10818620-10818686)
chr2 (33-99)||(16864978-16865044)
chr2 (31-97)||(24775850-24775916)
chr2 (31-97)||(30757610-30757676)
chr2 (30-99)||(3199895-3199964)
chr2 (54-99)||(6075495-6075540)
chr2 (30-99)||(6972581-6972650)
chr2 (30-99)||(7931537-7931606)
chr2 (178-235)||(15485825-15485882)
chr2 (26-99)||(26273756-26273829)
chr2 (30-99)||(28844056-28844125)
chr2 (147-208)||(33434242-33434303)
chr2 (54-99)||(44736716-44736761)
chr2 (246-274)||(314391-314419)
chr2 (246-274)||(4794526-4794554)
chr2 (246-274)||(6723988-6724016)
chr2 (246-274)||(6972667-6972695)
chr2 (31-99)||(18181255-18181323)
chr2 (31-99)||(31546060-31546128)
chr2 (27-99)||(44024715-44024787)
chr2 (144-193)||(44722533-44722584)
[»] chr5 (36 HSPs)
chr5 (146-212)||(35563117-35563183)
chr5 (144-232)||(17904293-17904381)
chr5 (135-199)||(41174176-41174240)
chr5 (157-237)||(11936050-11936130)
chr5 (135-237)||(3494461-3494563)
chr5 (28-97)||(858334-858403)
chr5 (147-237)||(5844400-5844490)
chr5 (31-97)||(17242997-17243063)
chr5 (120-222)||(18393307-18393416)
chr5 (28-97)||(20189891-20189960)
chr5 (31-99)||(39183670-39183738)
chr5 (152-231)||(35470054-35470133)
chr5 (136-211)||(37194029-37194103)
chr5 (28-99)||(42479539-42479610)
chr5 (135-205)||(12517134-12517204)
chr5 (31-97)||(35334569-35334635)
chr5 (146-208)||(42207074-42207136)
chr5 (31-97)||(42211332-42211398)
chr5 (29-98)||(32659814-32659883)
chr5 (28-99)||(33498534-33498607)
chr5 (54-99)||(34534919-34534964)
chr5 (28-88)||(4475254-4475314)
chr5 (31-99)||(16283630-16283698)
chr5 (132-188)||(28993886-28993942)
chr5 (28-99)||(6173020-6173091)
chr5 (28-99)||(31956727-31956798)
chr5 (30-97)||(39035897-39035964)
chr5 (28-99)||(39212591-39212662)
chr5 (28-95)||(42158686-42158753)
chr5 (31-97)||(7613706-7613772)
chr5 (31-97)||(11099520-11099586)
chr5 (55-97)||(41184116-41184158)
chr5 (30-99)||(72147-72216)
chr5 (167-216)||(35476601-35476650)
chr5 (28-88)||(25344778-25344838)
chr5 (35-91)||(42871034-42871090)
[»] chr3 (44 HSPs)
chr3 (132-237)||(12790093-12790198)
chr3 (132-235)||(33967912-33968015)
chr3 (27-99)||(27668365-27668437)
chr3 (152-236)||(50164060-50164144)
chr3 (136-197)||(33640986-33641047)
chr3 (132-208)||(34819736-34819812)
chr3 (146-233)||(47068746-47068833)
chr3 (145-212)||(52247421-52247488)
chr3 (136-226)||(48953947-48954037)
chr3 (135-237)||(50302944-50303046)
chr3 (120-205)||(55406907-55406992)
chr3 (31-99)||(52325174-52325242)
chr3 (31-97)||(54493907-54493973)
chr3 (135-232)||(14998785-14998881)
chr3 (158-237)||(29793717-29793796)
chr3 (144-207)||(47068885-47068948)
chr3 (31-97)||(26134745-26134811)
chr3 (34-96)||(26832071-26832133)
chr3 (132-198)||(28309468-28309533)
chr3 (147-209)||(28958622-28958684)
chr3 (31-96)||(11529153-11529218)
chr3 (28-97)||(15082002-15082070)
chr3 (54-99)||(34081120-34081165)
chr3 (30-99)||(39329791-39329860)
chr3 (156-212)||(21758265-21758320)
chr3 (31-99)||(37041915-37041983)
chr3 (28-88)||(46627964-46628024)
chr3 (28-99)||(3862211-3862282)
chr3 (30-97)||(9218144-9218211)
chr3 (31-90)||(14756156-14756215)
chr3 (170-229)||(41242142-41242201)
chr3 (31-97)||(5245411-5245477)
chr3 (31-97)||(32827346-32827412)
chr3 (31-97)||(33994656-33994722)
chr3 (31-97)||(39866595-39866661)
chr3 (27-97)||(44234089-44234159)
chr3 (135-213)||(50170472-50170549)
chr3 (29-82)||(40614166-40614219)
chr3 (30-99)||(46194247-46194316)
chr3 (30-99)||(47496166-47496235)
chr3 (30-99)||(53754105-53754174)
chr3 (246-274)||(2868530-2868558)
chr3 (246-274)||(8498211-8498239)
chr3 (246-274)||(41287001-41287029)
[»] chr7 (35 HSPs)
chr7 (132-236)||(2457953-2458057)
chr7 (146-233)||(36783278-36783365)
chr7 (132-216)||(23031771-23031855)
chr7 (120-187)||(44599389-44599456)
chr7 (135-208)||(3399228-3399301)
chr7 (135-212)||(32948307-32948384)
chr7 (31-97)||(23703915-23703981)
chr7 (31-97)||(34963853-34963919)
chr7 (30-99)||(10355776-10355845)
chr7 (144-237)||(32546487-32546580)
chr7 (33-97)||(29434624-29434688)
chr7 (31-83)||(46095462-46095514)
chr7 (152-229)||(24164773-24164850)
chr7 (30-99)||(25778741-25778810)
chr7 (135-212)||(32650055-32650132)
chr7 (27-99)||(14648957-14649029)
chr7 (29-96)||(25940789-25940856)
chr7 (135-210)||(30003823-30003898)
chr7 (31-97)||(2842094-2842160)
chr7 (27-81)||(6697096-6697150)
chr7 (144-230)||(16831570-16831656)
chr7 (31-97)||(29257546-29257612)
chr7 (31-97)||(31581485-31581551)
chr7 (28-94)||(34001898-34001964)
chr7 (31-97)||(37490660-37490726)
chr7 (31-97)||(40590867-40590933)
chr7 (31-97)||(48981655-48981721)
chr7 (30-99)||(9602858-9602927)
chr7 (30-99)||(9830429-9830498)
chr7 (30-99)||(34064212-34064281)
chr7 (30-99)||(37264310-37264379)
chr7 (30-99)||(37496438-37496507)
chr7 (143-191)||(9603528-9603576)
chr7 (143-191)||(9831099-9831147)
chr7 (32-88)||(35013965-35014021)
[»] scaffold0129 (1 HSPs)
scaffold0129 (143-237)||(37452-37546)
[»] chr6 (13 HSPs)
chr6 (144-232)||(1288129-1288217)
chr6 (144-232)||(32604553-32604641)
chr6 (145-234)||(34989564-34989652)
chr6 (28-96)||(14306280-14306348)
chr6 (28-93)||(7739557-7739622)
chr6 (30-99)||(15321266-15321335)
chr6 (28-96)||(14312687-14312755)
chr6 (54-97)||(33109372-33109415)
chr6 (37-99)||(8569787-8569849)
chr6 (28-97)||(7301119-7301188)
chr6 (144-209)||(31237268-31237332)
chr6 (246-274)||(9755269-9755297)
chr6 (27-98)||(26356267-26356338)
[»] scaffold0095 (1 HSPs)
scaffold0095 (135-191)||(36488-36544)
[»] scaffold0221 (1 HSPs)
scaffold0221 (35-97)||(8886-8948)
[»] scaffold0058 (1 HSPs)
scaffold0058 (33-97)||(14455-14519)
[»] scaffold0321 (1 HSPs)
scaffold0321 (28-97)||(9591-9657)
[»] scaffold0172 (1 HSPs)
scaffold0172 (167-205)||(26073-26111)
[»] scaffold0045 (1 HSPs)
scaffold0045 (31-97)||(26321-26387)
[»] scaffold0028 (1 HSPs)
scaffold0028 (31-97)||(26612-26678)
[»] scaffold0001 (1 HSPs)
scaffold0001 (31-97)||(394777-394843)
[»] scaffold0685 (1 HSPs)
scaffold0685 (30-99)||(6441-6510)
[»] scaffold0155 (1 HSPs)
scaffold0155 (30-99)||(7995-8064)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 368
Target Start/End: Complemental strand, 40293759 - 40293415
Alignment:
Q  24 tcatcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataattnnnnnnnntgtcttgctaacttgt 123  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||    
T  40293759 tcatcattatcatcaatgtaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataattaaaaaaa-tgtcttgttaacttgt 40293661  T
Q  124 gcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaa 223  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  40293660 gcattttaaaccttaaaatcttaaaaatttatcttttcaacgcaatatttattatttaattctattttaagatctttatcttatgccctaagggtataaa 40293561  T
Q  224 ttaacattttcctt-nnnnnnnnttaatattgtattgaaaagtgaaatggatgtaccataatannnnnnnnnnnnnnnacaaaatattgtattgaaaagt 322  Q
    ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  40293560 ttaacattttccttaaaaaaaaattaatattgtattgaaaagtgaaatggatgtaccataatattttttatattttttacaaaatattgtattgaaaagt 40293461  T
Q  323 gaaattggacaatattttttatgaatcggagggagtattgatgatg 368  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  40293460 gaaattggacaatattttttatgaaccggagggagtattgatgatg 40293415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 6942480 - 6942580
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttc 234  Q
    ||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  6942480 cttaaaagtttaaaaacttatcttttcaatgccacatttattttttaattctatttttagatttttatcttgtgccctaagggcacaaattaacattttc 6942579  T
Q  235 c 235  Q
    |    
T  6942580 c 6942580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 17354557 - 17354464
Alignment:
Q  139 aaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  17354557 aaatcttaaaaacttatcttttcaatacaatatttattatttgattctattttaagatctttatcttgtgctcttagggtacaagttaacattt 17354464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 48818485 - 48818586
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcc 235  Q
    |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||| |||| ||| ||||| ||    
T  48818485 ttaaaagtttaaaaacttatcttttcaatgcattatttattgtttaattctattttaagatccttatgttgtgtcctaagggcacaagttagcatttccc 48818584  T
Q  236 tt 237  Q
    ||    
T  48818585 tt 48818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 27574659 - 27574587
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    ||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27574659 ttaaaatcttaaaattttatcttttcaattcaatatttattatttaattctattttaagatctttatcttgtg 27574587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 6942259 - 6942324
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  6942259 ttaaaaacttatcttttcaatacaatatttattgtttaattttattttaagatctttatcttgtgc 6942324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 19594457 - 19594549
Alignment:
Q  140 aattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||  ||||||||| ||||| || |||| ||| |||||    
T  19594457 aattttaaaaacttatcttttcaatacaatatttattgtataattctattttaagatccctatcttgtgacctaacggcacaagttagcattt 19594549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 2075250 - 2075184
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttat 202  Q
    ||||||| ||||||| ||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  2075250 ttaaaatcttaaaaatttatctttttaatgcaatattttttatttaattctattttaagatttttat 2075184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 33977801 - 33977875
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcc 210  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||| |||||| |||||    
T  33977801 ttaaaagtttaaaaatttatcttttcaatgcaatatttattttttaattatattttaatatccttatctcgtgcc 33977875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 38160191 - 38160262
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||| ||||||||||  |||| |||||||| ||||||||||| |||| |||||||||||||||    
T  38160191 cattatcataaatacaaagtgaaatatattgaattgagagtgataaaagtaatattaattagagttataatt 38160262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 49448908 - 49448838
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||  ||  |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  49448908 attatcataaatgcaaagtataatatattgaattgagaatgatgaaagtagtattaattagagttataatt 49448838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 42600688 - 42600748
Alignment:
Q  152 ttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||| |||||||||||||||||||| || |||| |||||||||||||||||||||| ||||    
T  42600688 ttatattttcaatgcaatatttatttttaaattttattttaagatctttatcttgtaccct 42600748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 7162239 - 7162306
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatc 203  Q
    |||||| |||||| | |||||| ||||||| |||||||||| |||||||||||||||||||| |||||    
T  7162239 ttaaaagtttaaacaattatctcttcaatgtaatatttattttttaattctattttaagatccttatc 7162306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 22872427 - 22872498
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||| ||  |||| |||||||| |||| |||||| |||| |||||||||||||||    
T  22872427 cattatcataaatgcaaagtggaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 22872498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 2720594 - 2720532
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttg 206  Q
    ||||||| |||||| |||||||||||||||| | |||||||||||||| ||||| ||||||||    
T  2720594 ttaaaaagttatctcttcaatgcaatatttaatttttaattctatttttagatccttatcttg 2720532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 20919746 - 20919822
Alignment:
Q  157 ttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatttt 233  Q
    |||| ||| ||||||||||| |||||||||||||||| |||||||| ||||   |||||| ||||| ||||||||||    
T  20919746 tttttaatacaatatttattgtttaattctattttaaaatctttattttgtattctaaggatacaagttaacatttt 20919822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 47846964 - 47846896
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||||  |||| ||||  || |||| ||||||||||| |||||||||||||||    
T  47846964 tatcataaatgcaaagtgaaatatattgaattaggagtgatgaaagtagtattaattagagttataatt 47846896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 4360453 - 4360515
Alignment:
Q  34 cataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    ||||||||||||||| ||  |||| ||||| ||||||| ||||||||||| ||||||||||||    
T  4360453 cataaatgcaaagtggaatatattgaattgtgaatgatgaaagtagtattaattagagttata 4360515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 37309763 - 37309697
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||| |||  |||| |||||||| |||| |||||| |||| |||||||||||||    
T  37309763 tatcataaatgcaaagttaaatatattgaattgagagtgatgaaagtaatattaattagagttataa 37309697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 38977056 - 38976990
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  |||| |||||| |||||| ||||||||||| |||||||||||||    
T  38977056 tatcataaatgtaaagtggaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 38976990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 39835762 - 39835716
Alignment:
Q  145 taaaaacttatcttttcaatgcaatatttattatttaattctatttt 191  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||    
T  39835762 taaaaacttatcttttaaatgtaatatttattttttaattctatttt 39835716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 42185838 - 42185904
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||| ||| ||||||  |||| |||||||| |||| ||||||||||| |||||||||||||    
T  42185838 tatcataaatacaaggtgaaatatattgaattgagagtgatgaaagtagtattaattagagttataa 42185904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 42544274 - 42544208
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || ||||||||||| |||| |||||||||||||    
T  42544274 tatcataaatgcaaagtggaatatattgaattgtgagtgataaaagtaatattaattagagttataa 42544208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 50328113 - 50328159
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagt 77  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||    
T  50328113 tatcataaatgcaaagtgaaatatattgaattgagaatgataaaagt 50328159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 22020551 - 22020620
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||||||||| | ||||||||| | |||||||||||||||    
T  22020551 ttatcataaatgcaaagtagaatatattgaattgagaatggtgaaagtagtaataattagagttataatt 22020620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 38319977 - 38319908
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| |||| ||||||||||| ||||| |||||||||    
T  38319977 ttatcataaatgcaaagtagaatatattgaattgagagtgatgaaagtagtattaattagtgttataatt 38319908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 47277723 - 47277792
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| ||||| |||  |||| |||||||| |||| ||||||||||| |||| ||||||||||    
T  47277723 ttatcataaatgtaaagtaaaatatattgaattgagagtgattaaagtagtattaattatagttataatt 47277792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 17237108 - 17237040
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| ||  |||| |||||| |  ||| ||||||||||| |||||||||||||||    
T  17237108 tatcataaatgcaaagtggaatatattgaattgaaagcgatgaaagtagtattaattagagttataatt 17237040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 41436546 - 41436478
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||  ||  | || ||||| ||||||| ||||||||||| |||||||||||||||    
T  41436546 tatcataaatgcaaagtagaatattttgaattgcgaatgatgaaagtagtattaattagagttataatt 41436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 51572270 - 51572338
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||| |||||| ||  |||| |||||  | |||||||||||||||| |||||||||||||||    
T  51572270 tatcataaatgtaaagtgtaatatattgaattggaagtgataaaagtagtattaattagagttataatt 51572338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 2324212 - 2324153
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcc 210  Q
    ||||| ||||||||||||||||||||||||| |||||    |||||||||| |||||||||||||    
T  2324212 aaaaaattatcttttcaatgcaatatttattttttaa----attttaagat-tttatcttgtgcc 2324153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 30617640 - 30617553
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaa 222  Q
    ||||||| ||| |||| ||||| |||||||  || ||||| | | ||||||||||||||| || ||| ||||||||||||||| ||||    
T  30617640 cttaaaagtttcaaaagttatcctttcaatataaaatttactttctaattctattttaagctccttaacttgtgccctaagggcacaa 30617553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 35998158 - 35998225
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||| ||||| |||  |||| |||||||| || | ||||||||||| |||||||||||||    
T  35998158 ttatcataaatgtaaagtaaaatatattgaattgagagtggtgaaagtagtattaattagagttataa 35998225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 41203799 - 41203736
Alignment:
Q  34 cataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||| ||||||| ||  |||| |||||| | |||||||||||||||| |||||||||||||    
T  41203799 cataaatacaaagtggaatatattgaattgaaagtgataaaagtagtattaattagagttataa 41203736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 25250633 - 25250703
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||| |||  ||  ||||||||| ||| |||| ||| ||||||| |||||||||||||||    
T  25250633 attatcataaatgcatagtagaatatattaaattaagagtgatgaaactagtattaattagagttataatt 25250703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 26799258 - 26799324
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||| |  ||  |||| ||||||||||||| |||||| |||| |||||||||||||    
T  26799258 tatcataaatgcaaaatagaatatattgaattgagaatgatgaaagtactattaattagagttataa 26799324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 29644420 - 29644354
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||  ||  |||| ||||||||||||| ||||||||||| |||| ||||||||    
T  29644420 tatcataaatgtaaagtagaatatattgaattgagaatgatgaaagtagtattaattatagttataa 29644354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 41710186 - 41710252
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || |||| |||||| |||| |||||||||||||    
T  41710186 tatcataaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 41710252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 48740585 - 48740519
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  |||| |||| | ||||||||||||| |||| |||||||||||||    
T  48740585 tatcataaatgtaaagtggaatatattgaattaaaaatgataaaagtaatattaattagagttataa 48740519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 49306652 - 49306586
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||  || |||| ||||||||||| |||||||||||||    
T  49306652 tatcataaatgcaaagtggaatatattgaattaggagtgatgaaagtagtattaattagagttataa 49306586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 54612631 - 54612696
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttat 202  Q
    |||||| ||||||| ||||| |||||||||||| ||||||| |||||||||| ||| ||||| ||||    
T  54612631 ttaaaagtttaaaatcttatattttcaatgcaacatttatt-tttaattctagttttagatccttat 54612696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 54729526 - 54729591
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| |||||||  |||| ||||||||||| |||||||||||||    
T  54729526 tatcataaatgcaaagtggaatatattgaattgagg-tgatgaaagtagtattaattagagttataa 54729591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 22496740 - 22496785
Alignment:
Q  52 agtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||    
T  22496740 agtattaaattgagagcgatgaaagtagtattaattagagttataa 22496785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 45891848 - 45891941
Alignment:
Q  137 taaaattttaaaaacttatcttttcaatg-caatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaaca 229  Q
    ||||| ||||||| ||||| ||||||| | ||| | |||| ||||||||||||||| ||||  ||| |||||||||| |||| |||| ||||||    
T  45891848 taaaaatttaaaatcttattttttcaaagacaaaaattatgatttaattctatttttagattcttaacttgtgcccttagggcacaagttaaca 45891941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 51076479 - 51076524
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||| |||||||| || |||| |||||||||||||||    
T  51076479 tattaaattgagagtgataaaattaatattaattagagttataatt 51076524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 51164602 - 51164529
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    ||||||| ||| |||| |||| ||||||||  || |||||||| |||||||||||||||| || ||| ||||||    
T  51164602 cttaaaagtttcaaaagttattttttcaatataaaatttattacttaattctattttaagttccttaacttgtg 51164529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 52677068 - 52677125
Alignment:
Q  26 atcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatt 83  Q
    |||||||||||||||| ||||| |||  ||||||||||||| |||| |||||| ||||    
T  52677068 atcattatcataaatgtaaagtaaaatatattaaattgagagtgatgaaagtactatt 52677125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 55360389 - 55360458
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  |||| |||||||| |||| |||||| |||| |||||||||||||||    
T  55360389 ttatcataaatgtaaagtacaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 55360458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 37316045 - 37316073
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  37316045 ttaatattgtattgaaaagtgaaatggat 37316073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 33274283 - 33274395
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggta 219  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  |    
T  33274283 ttgtgcattttaaaccttaaaatcttaaaaatttatcttttcaatgcaatatttattatttatttctattttaagatctttctcttgtgccctaaggaca 33274382  T
Q  220 caaattaacattt 232  Q
    ||| |||||||||    
T  33274383 caagttaacattt 33274395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 12892632 - 12892735
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||||||||  |||||||||||| ||||||||  |||||||||||||||||| |||||||| ||| ||||||| ||| |||| || |||||||||||||    
T  12892632 aaccttaaaaacttaaaaacttatattttcaatataatatttattatttaattttattttaaaatccttatcttatgcactaaaggcacaaattaacatt 12892731  T
Q  232 ttcc 235  Q
    ||||    
T  12892732 ttcc 12892735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 40330211 - 40330132
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaa 214  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||| || |||||||| ||| ||||||||||||||||    
T  40330211 cttaaaaatttaaaaacttatattttcaatacaatatttattatttatttttattttaatatcattatcttgtgccctaa 40330132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 18310546 - 18310642
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatt---taattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||||||||||||||||| |||||||  |||||   |||||||||||||||||||||||||||| || |||| | |||| ||||||||| ||||    
T  18310546 ttaaaaacttatcttttcaatacaatattatttattgtctaattctattttaagatctttatcttgttccttaagagaacaagttaacatttccctt 18310642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 30928835 - 30928924
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatttt 233  Q
    |||||||||||| |||| |||| |||||||||| || ||||||||||||| ||| |||||||||  |||||| | |||||||||||||||    
T  30928835 ttaaaaacttatatttttaatgtaatatttatttttaaattctattttaaaatccttatcttgtatcctaagagcacaaattaacatttt 30928924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 23736976 - 23737073
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatt---tattatttaattctattttaagatctttatcttgtgccctaagggta-caaattaacattttcctt 237  Q
    |||||||||||||||||||||  ||||||   |||| |||||||||||||||||||||||||||||| || |||| | | ||| ||||||||||||||    
T  23736976 ttaaaaacttatcttttcaatataatattatttattgtttaattctattttaagatctttatcttgttccttaagagaatcaagttaacattttcctt 23737073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 404423 - 404488
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcc 210  Q
    ||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||    
T  404423 ttaaaaatttatcttt-caatacaatatttattgtttaattctattttaagatatttatcttgtgcc 404488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 12398093 - 12398171
Alignment:
Q  132 aaccttaaaattttaaaaacttatctttt-caatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    ||||||||||  ||||||||||| ||||| |||| ||  ||||||||||||||| |||||||||||| |||||||||||    
T  12398093 aaccttaaaagcttaaaaacttaactttttcaatacataatttattatttaattatattttaagatccttatcttgtgc 12398171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 27868362 - 27868435
Alignment:
Q  26 atcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||||  ||  |||| ||||||||||||| ||||||||||| |||| | ||||||||    
T  27868362 atcattatcataaatgcaaagtagaatatattgaattgagaatgatgaaagtagtattaattaaaattataatt 27868435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 32679101 - 32679032
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| ||||| |||  ||||||||||||| |  ||||||||||||| |||||||||||||||    
T  32679101 ttatcataaatgtaaagtaaaatatattaaattgagagttgtaaaagtagtattaattagagttataatt 32679032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 5423203 - 5423263
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttatta 88  Q
    ||||||||||||| ||||||| ||  |||| ||||||||||||||||||||||||| ||||    
T  5423203 cattatcataaatacaaagtggaagatattgaattgagaatgataaaagtagtattaatta 5423263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 39400958 - 39401014
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctatttt 191  Q
    |||||||  ||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  39400958 cttaaaagcttaaaaacttatcatttcaatgcaacatttattttttaattctatttt 39401014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 27987726 - 27987655
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| |||||  |||| ||||| || |||| ||||||||||| |||| ||||||||||    
T  27987726 cattatcataaatgcaaaatgaaatatattgaattgtgagtgatgaaagtagtattaattatagttataatt 27987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 28045028 - 28044957
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| |||||  |||| ||||| || |||| ||||||||||| |||| ||||||||||    
T  28045028 cattatcataaatgcaaaatgaaatatattgaattgtgagtgatgaaagtagtattaattatagttataatt 28044957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 42412422 - 42412493
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||| ||  |||| ||||| || |||| ||||||||||| ||||||| |||||||    
T  42412422 cattatcataaatgcaaagtggaatatattgaattgggagtgatgaaagtagtattaattagagctataatt 42412493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 32967319 - 32967385
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||  |||||| ||  |||| ||||||||||||| ||||||||||| |||||||||||||    
T  32967319 tatcataaatttaaagtggaatatattgaattgagaatgatgaaagtagtattaattagagttataa 32967385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 45425550 - 45425484
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||||||||  ||||||| |||||| |||| |||||||||||||    
T  45425550 tatcataaatgcaaagtggaatatattaaattaggaatgatgaaagtaatattaattagagttataa 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 886489 - 886558
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||  |||||||||||||||||||| |||| ||||| |||||||||    
T  886489 ttatcataaatgcaaagtagaatatatcgaattgagaatgataaaagtaatattaattagtgttataatt 886558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 2195534 - 2195465
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||| || |||| ||||||||||| |||||||||||||||    
T  2195534 ttatcataaatgcaaagtagaatatattgaattgggagtgatgaaagtagtattaattagagttataatt 2195465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 5297968 - 5298037
Alignment:
Q  140 aattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    ||||||||||| |||||||||| ||||||  |||||| |||||||||||||| || |  |||||||||||    
T  5297968 aattttaaaaatttatcttttcgatgcaacgtttattttttaattctatttttaggttcttatcttgtgc 5298037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 7258404 - 7258477
Alignment:
Q  26 atcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||| |  ||  |||| ||||| || |||| ||||||||||| |||||||||||||||    
T  7258404 atcattatcataaatgcaaactagaatatattgaattgggagtgatgaaagtagtattaattagagttataatt 7258477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 10728963 - 10729032
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||| ||  |||| ||||| || |||| ||||||||||| |||||||||| ||||    
T  10728963 ttatcataaatgcaaagtggaatatattgaattgggagtgattaaagtagtattaattagagttacaatt 10729032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 14748747 - 14748816
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||||||||| | ||||||||||| ||||| |||||||||    
T  14748747 ttatcataaatgcaaagtagaatatattgaattgagaatggtgaaagtagtattaattagtgttataatt 14748816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 33826273 - 33826228
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  33826273 tattgaattgagaatgatgaaagtagtattgattagagttataatt 33826228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 3442555 - 3442480
Alignment:
Q  24 tcatcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||   ||| |||||  |||| |||||| |||||| ||| ||||||| |||||||||||||||    
T  3442555 tcatcattatcataaacataaattgaaagatattgaattgaaaatgatgaaaatagtattaattagagttataatt 3442480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 4274341 - 4274407
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| |||||||| || | ||| || |||| |||||||||||||    
T  4274341 tatcataaatgcaaagtgaaatatattgaattgagagtggtgaaaataatattaattagagttataa 4274407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 5392114 - 5392048
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || || | ||||||||||| |||||||||||||    
T  5392114 tatcataaatgcaaagtggaatatattgaattgggagtgttgaaagtagtattaattagagttataa 5392048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 22490456 - 22490390
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||| ||||||| ||  |||| ||||||||||||| | ||| ||||| |||||||||||||    
T  22490456 tatcataaatacaaagtggaatatattgaattgagaatgatgatagttgtattaattagagttataa 22490390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 28802832 - 28802766
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| |||||||| |||| ||| || |||| |||||||||||||    
T  28802832 tatcataaatgcaaagtggaatatattgaattgagagtgatgaaaatattattaattagagttataa 28802766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 39171608 - 39171542
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || |||| ||| ||||||| |||||||||||||    
T  39171608 tatcataaatgcaaagtggaatatattgaattgtgagtgatgaaaatagtattaattagagttataa 39171542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 42558623 - 42558685
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagtt 93  Q
    |||||||||||||||||| ||  |||| |||| ||| |||| ||||||||||| |||||||||    
T  42558623 tatcataaatgcaaagtggaatatattgaattaagagtgatgaaagtagtattaattagagtt 42558685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 44790464 - 44790530
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  |||| ||||| ||||| | ||||||||||| |||||||||||||    
T  44790464 tatcataaatgtaaagtggaatatattgaattgggaatggtgaaagtagtattaattagagttataa 44790530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 8418343 - 8418412
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  || | |||||||| |||| ||||||||||| |||||||||||||||    
T  8418343 ttatcataaatgtaaagtagaatatactgaattgagagtgatgaaagtagtattaattagagttataatt 8418412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 26570190 - 26570246
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatt 83  Q
    |||||||||||||||||||||| |   | || ||||||||||||||||| |||||||    
T  26570190 tcattatcataaatgcaaagtggaggatgttgaattgagaatgataaaaatagtatt 26570246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 29615861 - 29615797
Alignment:
Q  33 tcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||| |||||| ||  |||| ||||| ||||||| ||||||||||| |||| ||||||||    
T  29615861 tcataaatgtaaagtggaatatattgaattgggaatgatgaaagtagtattaattaaagttataa 29615797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 38252482 - 38252546
Alignment:
Q  33 tcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||| |||||| ||  |||| |||||  |||||| ||||||||||| |||||||||||||    
T  38252482 tcataaatgtaaagtggaatatattgaattggaaatgatgaaagtagtattgattagagttataa 38252546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 59)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 10987286 - 10987194
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  10987286 ttgtgcattttaaactttaaaatcttaaaaacttatcttttcaatgcaatatttattattggaatctattttaagatctttatcttgtgccct 10987194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 35652570 - 35652475
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaag 215  Q
    ||||||||| |||||||||| |  |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  35652570 ttgtgcattctaaaccttaacaacttaaaaacttatcttttcaatgcaatatttattatttaatttaattttaagatctttatcttgtgccttaag 35652475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 36438414 - 36438519
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||||||||  || ||||||||| |||||||||||||||||||| || ||||||||||||||||| |||| |||||||||||||| |||| ||||||||    
T  36438414 aaccttaaaaacttcaaaacttatattttcaatgcaatatttatttttaaattctattttaagatccttattttgtgccctaagggcacaagttaacatt 36438513  T
Q  232 ttcctt 237  Q
    ||||||    
T  36438514 ttcctt 36438519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 30321986 - 30322058
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctatttta 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30321986 ttgtgcattttaaaccttaaaatcttaaaaacttatcttttcaatgcaatatttattattcaattctatttta 30322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 13383105 - 13383008
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||| ||||||||||||| |||| ||| ||||||||||| |||| ||||||||||| || ||||||||||||||| ||||||||| |||||||||    
T  13383105 cttaaaagtttaaaaacttatatttttaatacaatatttattgtttatttctattttaaaatttttatcttgtgcccttagggtacaagttaacattt 13383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 47950065 - 47949991
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttg 206  Q
    ||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  47950065 aaccttaaaagcttaaaaacttgtcttttcaatgcaatatttattttttaattctattttaagatccttatcttg 47949991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 10101298 - 10101205
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctatttta-----agatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||     |||||||||||||||||||||| || |||| |||||||||    
T  10101298 ttaaaaacttatctttttaatacaatatttattatttaattctattttaagataagatctttatcttgtgccctaaaggcacaatttaacattt 10101205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 12570177 - 12570080
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||| || |||||||||| |||| ||| ||||||||||| |||  |||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  12570177 cttaaaagttcaaaaacttatatttttaatacaatatttattgtttgtttctattttaagatctttatcttgtgcccttagggcacaagttaacattt 12570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 11908573 - 11908646
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||| ||||||    
T  11908573 ttaaaagtttaaaaacttatcttttcaatgcaacatttattttttaattctatatttagatctttatattgtgc 11908646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 47176774 - 47176867
Alignment:
Q  145 taaaaacttatcttttcaatgcaatatttattatttaa-ttctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    |||||||| || |||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||| || |||| |||| ||||||||||||||    
T  47176774 taaaaactcatattttcaatgcaatatttattttttaaattctatttttagatccttatcttgtgctcttagggcacaagttaacattttcctt 47176867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 47449226 - 47449310
Alignment:
Q  153 tatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    |||||||||||| |||||||||||| ||||||||||||||||||  |||||||||| |||||||| |||| |||| |||| ||||    
T  47449226 tatcttttcaatacaatatttattagttaattctattttaagattcttatcttgtggcctaagggcacaagttaatatttccctt 47449310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 21008226 - 21008289
Alignment:
Q  133 accttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagat 196  Q
    |||||||||  ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  21008226 accttaaaaacttaaaaagttatcttttcaatacaatatttattatttaattctattttaagat 21008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 47445992 - 47446071
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctt 199  Q
    ||||||||||  || ||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  47445992 ttgtgcatttataatcttaaaagttaaaaaatttatcttttcaatacaatatttattatttaattctatttttagatctt 47446071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 17342896 - 17342826
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataat 98  Q
    ||||||||||||| ||||||||||  |||| |||||||| |||||||||||||||| ||||||||||||||    
T  17342896 cattatcataaatacaaagtgaaatatattgaattgagagtgataaaagtagtattaattagagttataat 17342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 50075618 - 50075688
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||| |||||||| |||||||||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  50075618 cttaaaagtttaaaaagttatcttttcaacgcaatatttattgtttatttctattttaaaatctttatctt 50075688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 46288870 - 46288769
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||||||||  |||||||||||| || |||||  |||||||||| |||||||||||||| ||||| |||||||   ||||||| ||| |||||||||||    
T  46288870 aaccttaaaaacttaaaaacttattttatcaatataatatttattgtttaattctattttgagatccttatcttccaccctaagagtataaattaacatt 46288771  T
Q  232 tt 233  Q
    ||    
T  46288770 tt 46288769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 23452959 - 23453026
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||| |||||||| |||  ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  23452959 ttaaaatcttaaaaacatat--tttcaatacaatatttattattttattctattttaagatctttatctt 23453026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 7789530 - 7789446
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||||||  ||| | ||||| ||||||| |||| |||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  7789530 ttgtgcatttataacttcaaaatcttaaaaatttat-ttttcaatgcaatatttattttttaattccattttaagatcattatctt 7789446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 30058432 - 30058522
Alignment:
Q  138 aaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacat 230  Q
    ||||||||||||  |||| |||||||   || |||||||| |||||||||||||||| |||||| |||||||||| ||||||||| |||||||    
T  30058432 aaaattttaaaa--ttattttttcaacataaaatttattacttaattctattttaagttctttaacttgtgcccttagggtacaagttaacat 30058522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 1607393 - 1607451
Alignment:
Q  159 ttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaaggg 217  Q
    |||||| ||||||||||||||||||||||||||||   ||| |||||||||||||||||    
T  1607393 ttcaatacaatatttattatttaattctattttaaatccttcatcttgtgccctaaggg 1607451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 7785317 - 7785383
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  |||| ||||||||  ||||||||||||||| |||||||||||||    
T  7785317 tatcataaatgtaaagtgaaatatattgaattgagagcgataaaagtagtattaattagagttataa 7785383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 34813987 - 34813917
Alignment:
Q  26 atcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    ||||||||||||||||||||||  ||  |||| ||||||||||||| ||||||||||| |||||| |||||    
T  34813987 atcattatcataaatgcaaagtagaatatattgaattgagaatgatgaaagtagtattcattagaattata 34813917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 44487698 - 44487612
Alignment:
Q  147 aaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatttt 233  Q
    |||||||||||||| |||| || ||||||| ||||||| || ||| ||||| |||||||||||| | || |||||| ||||||||||    
T  44487698 aaaacttatctttttaatgtaacatttattttttaattttacttttagatcattatcttgtgcctttagtgtacaagttaacatttt 44487612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 14149523 - 14149446
Alignment:
Q  155 tcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    |||||||||| ||||| ||||| |||| ||||||||||||||  ||||||| ||||||||||| |||| |||| ||||    
T  14149523 tcttttcaatacaataattattgtttacttctattttaagattcttatcttatgccctaagggcacaagttaatattt 14149446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 32587833 - 32587764
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||||||||  |||| |||||||| |||| ||| || |||| |||||||||||||    
T  32587833 cattatcataaatgcaaagtgaaatatattgaattgagagtgatgaaattattattaattagagttataa 32587764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 45889288 - 45889357
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||||| ||  |||| ||||  ||||||| ||||||||||| |||||||||||||    
T  45889288 cattatcataaatgcaaagtggaatatattgaattatgaatgatgaaagtagtattaattagagttataa 45889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 38081665 - 38081570
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattcta--ttttaagatctttatcttgtgccctaagggtacaaattaac 228  Q
    ||||||| ||| |||| |||||||||||||  || |||||||| |||||||||  ||||||| || ||| ||||||||||||||| |||| |||||    
T  38081665 cttaaaagtttcaaaagttatcttttcaatataaaatttattacttaattctattttttaagttccttaacttgtgccctaagggcacaagttaac 38081570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 40019827 - 40019756
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||  ||||||||||| |||| |||| ||| |||| |||||| |||| |||||||||||||||    
T  40019827 cattatcataaagacaaagtgaaaaatattgaattcagagtgatgaaagtaatattaattagagttataatt 40019756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 8327782 - 8327716
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||| || ||  |||| |||||||| |||| ||||||||||| |||||||||||||    
T  8327782 tatcataaatgcaaaatggaatatattgaattgagagtgatgaaagtagtattaattagagttataa 8327716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 10657995 - 10658065
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||| |||||||||| || |||| |||| || ||||||| |||||||||||||| |||| ||||||||    
T  10657995 cttaaaagtttaaaaactcatatttttaatgaaacatttattttttaattctatttttagatatttatctt 10658065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 24439195 - 24439125
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||| || ||||  |||||||    
T  24439195 cttaaaagtttaaaaacttatttttttaatacaatatttattttttaattctatatttagattcttatctt 24439125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28277081 - 28277147
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  |||| |||||| |||||| ||||| ||||| |||||||||||||    
T  28277081 tatcataaatgtaaagtgaaatatattgaattgaaaatgatgaaagtggtattaattagagttataa 28277147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 48242633 - 48242699
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  |||| |||||||||||||||||||| |||| |||| ||||||||    
T  48242633 tatcataaatgtaaagtggaatatattgaattgagaatgataaaagtaatattaattaaagttataa 48242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 2355458 - 2355527
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatattta-ttatttaattctattttaagatctttatcttgtgccct 212  Q
    ||||| ||||||||||||||||||| ||||| |||||| ||| |||||| ||||| ||||||||| ||||    
T  2355458 ttaaacacttatcttttcaatgcaaaatttatttattttattatatttttagatccttatcttgtaccct 2355527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 29225819 - 29225750
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||| || |||| ||||||||||| |||||||||||||||    
T  29225819 ttatcataaatgcaaagtagaatatattgaattgggagtgatgaaagtagtattaattagagttataatt 29225750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 46536405 - 46536340
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    |||||||||| ||||||| ||  ||||||||| ||| |||| ||||||||||| ||||||||||||    
T  46536405 tatcataaatacaaagtggaatatattaaattaagagtgatgaaagtagtattaattagagttata 46536340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 50267478 - 50267547
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||| |||||||||  |||| ||||| ||||||| |||||| |||| |||||| ||||||    
T  50267478 cattatcataaatgtaaagtgaaatatattgaattgggaatgatgaaagtaatattaattagaattataa 50267547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 51749223 - 51749292
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||||| ||  |||| ||||| || |||| |||||| |||| |||||||||||||    
T  51749223 cattatcataaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 51749292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 10587620 - 10587692
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||| |  ||  |||| |||||||| |||| ||||||||||| ||||| |||||||||    
T  10587620 tcattatcataaatgcaaaatagaatatattgaattgagagtgatgaaagtagtattaattagtgttataatt 10587692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 13500772 - 13500840
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| ||| |||| ||||| || || | ||||||||||| |||||| ||||||||    
T  13500772 tatcataaatgcaaagtggaaaatattgaattgggagtgctgaaagtagtattaattagaattataatt 13500840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 27831914 - 27831850
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagt 92  Q
    ||||||||||||||||||||| ||  |||| ||||| || |||| ||||||||||| ||||||||    
T  27831914 cattatcataaatgcaaagtggaagatattgaattgggagtgatgaaagtagtattaattagagt 27831850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 39417014 - 39416954
Alignment:
Q  170 atttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacat 230  Q
    ||||||||||||||||||||||||| || |||  ||||||||| |||| |||| |||||||    
T  39417014 atttattatttaattctattttaagttccttaatttgtgcccttagggaacaagttaacat 39416954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 2930110 - 2930148
Alignment:
Q  199 ttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  2930110 ttatcttgtgccttaagggcacaaattaacattttcctt 2930148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 3555598 - 3555664
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| ||  ||| ||||||||||| |||||||||||||    
T  3555598 tatcataaatgcaaagtggaatatattgaattgggatagatgaaagtagtattaattagagttataa 3555664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 3718887 - 3718957
Alignment:
Q  26 atcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    |||||||||||||||| |||||  ||  |||| |||||||| |||| || |||||||| ||||||||||||    
T  3718887 atcattatcataaatgtaaagtataatatattgaattgagagtgatgaaggtagtattaattagagttata 3718957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 26756041 - 26755975
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||  |||||| ||  |||| |||||| |||||| ||||||||||| |||||||||||||    
T  26756041 tatcataaatataaagtgtaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 26755975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 28839404 - 28839338
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || |||| ||||||||||| |||| ||||||||    
T  28839404 tatcataaatgcaaagtggaatatattgaattgggagtgatgaaagtagtattaattatagttataa 28839338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 28924108 - 28924046
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    ||||||||||||||| ||| |||| |||| | |||||||||||||| ||||  ||||||||||    
T  28924108 aaaaacttatctttttaatacaatgtttaatttttaattctatttttagattcttatcttgtg 28924046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 34967700 - 34967794
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacat 230  Q
    |||||| |||||||  |||| |||||||||||| | ||||  |||||||||||||| || |  ||| ||||||||| ||||| |||| |||||||    
T  34967700 ttaaaagtttaaaattttatattttcaatgcaaaagttatcttttaattctatttttagtttcttaacttgtgccccaagggcacaagttaacat 34967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 2886237 - 2886168
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| || | ||||||||||| ||||| |||||||||    
T  2886237 ttatcataaatgcaaagtagaatatattgaattgagagtggtgaaagtagtattaattagtgttataatt 2886168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 8890757 - 8890676
Alignment:
Q  152 ttatcttttcaatgcaatatttattattt-aattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    |||| ||||||| |||||||||||| ||| ||||||||||| ||||  |||||||||| ||| || | |||| |||||||||    
T  8890757 ttatattttcaacgcaatatttatttttttaattctatttttagattcttatcttgtgaccttagagcacaagttaacattt 8890676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 33149339 - 33149274
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttat 95  Q
    ||||||||||||||||||  ||  |||| |||||||| |||| ||||||||||| ||||| |||||    
T  33149339 ttatcataaatgcaaagtagaatatattgaattgagagtgatgaaagtagtattaattagtgttat 33149274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 39420650 - 39420581
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||| ||||||||||||| |||  | || |||||||||| || ||||||||||| |||||| ||||||||    
T  39420650 ttattataaatgcaaagtaaaacatgttgaattgagaattatgaaagtagtattaattagatttataatt 39420581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 46496086 - 46496017
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||||| ||  |||| ||||  |  |||| ||||||||||| |||||||||||||    
T  46496086 cattatcataaatgcaaagtggaatatattgaattaggcgtgatgaaagtagtattaattagagttataa 46496017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 52382428 - 52382497
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| ||||| |||  |||| |||||||| || | |||||| |||| |||||||||||||||    
T  52382428 ttatcataaatgtaaagtaaaatatattgaattgagagtggtgaaagtaatattaattagagttataatt 52382497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 21304449 - 21304385
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttat 95  Q
    |||||||||||||||||||||  |||| |||| ||| |||| |||||| |||| |||| ||||||    
T  21304449 tatcataaatgcaaagtgaaatatattgaattaagagtgatgaaagtaatattaattacagttat 21304385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 27932963 - 27932991
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  27932963 ttaatattgtattgaaaagtgaaatggat 27932991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 30513897 - 30513821
Alignment:
Q  138 aaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaa 214  Q
    |||| |||||||| ||||||||| |||  || ||||||  |||||||||||||| || ||| |||||| ||||||||    
T  30513897 aaaagtttaaaaatttatctttttaatataacatttatcttttaattctatttttaggtctatatcttatgccctaa 30513821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 40061878 - 40061806
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||| |  ||  |||| |||||||| |||| |||||| |||| |||||| ||||||||    
T  40061878 tcattatcataaatgcaaattagaatatattgaattgagagtgatgaaagtaatattaattagaattataatt 40061806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 59)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 43592736 - 43592829
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||    
T  43592736 ttaaaaacttatcttttcaatacaatatttattgtttcattctattttaagatctttatcttgtgccctaagggcacaagttagcatttccctt 43592829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 9886903 - 9886812
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||| ||||    
T  9886903 aaaaacttatcttttcaatacaatattaattatttaattctattttaagatatctatcttgtgccctaagggcacaaattaacttttccctt 9886812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 11252602 - 11252701
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttc 234  Q
    ||||||| ||| |||||||||||||||||| ||  ||||||| | |||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||    
T  11252602 cttaaaagtttcaaaacttatcttttcaatacaccatttattttctaattctatttttagatccttatcttgtgccctaagggcacaagttaacattttc 11252701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 4283456 - 4283554
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacat 230  Q
    ||||||||||| |||||||||||| |||| |||  |||||||||||||||||||||||| ||||| |||||||||||  |||| ||||||| |||||||    
T  4283456 aaccttaaaatcttaaaaacttatatttttaatataatatttattatttaattctatttcaagatatttatcttgtgttctaaaggtacaagttaacat 4283554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 9707121 - 9707195
Alignment:
Q  138 aaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||| ||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  9707121 aaaagttttaaaacttatcttttcaatgcaacatttattttttaattctatttttagatctttatcttgtgccct 9707195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 43664819 - 43664916
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaaggg 217  Q
    |||||||||  ||| ||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||||  ||||||||    
T  43664819 ttgtgcattcaaaatcttaaaagtttaaaaacttatattttcaatgtaatatttattttttaattctatttttagatcattatcttgtttcctaaggg 43664916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 35813862 - 35813764
Alignment:
Q  135 cttaaaattttaaaaactta-tcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||| || ||||||||| | ||||||||  |||||||||| |||| |||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  35813862 cttaaaagttaaaaaacttactattttcaatataatatttattgtttatttctattttaagatctttatcttgtgcccttagggcacaagttaacattt 35813764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 433649 - 433712
Alignment:
Q  174 attatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  433649 attatttaattttattttaagatctttatcttgtgtccttagggtacaagttaacattttcctt 433712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 30561026 - 30560935
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcc 235  Q
    ||||||||||||||||||||||||| ||||||| || ||||||| ||| |||||  ||||||||||||| |||| |||| ||| ||||||||    
T  30561026 ttaaaaacttatcttttcaatgcaacatttatttttaaattctacttttagatccctatcttgtgcccttagggcacaagttagcattttcc 30560935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 8335263 - 8335337
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcc 210  Q
    |||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||| || |||||||||    
T  8335263 ttaaaagtttaaaaacttatattttcaatgcaacatttattttttaattctatttttagatccttctcttgtgcc 8335337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 28226206 - 28226268
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatc 197  Q
    ||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  28226206 cttaaaagtttaaaaacttatcttttcaatataatatttattgtttaattctattttaagatc 28226268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 7721621 - 7721686
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||| ||||||    
T  7721621 ttaaaaacttatcttttcaatgcaacatttattttttaattctatttttagatcattatattgtgc 7721686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 23685024 - 23684958
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| |||||||| |||| ||||||||||| |||||||||||||    
T  23685024 tatcataaatgcaaagtgaaatatattgaattgagagtgatgaaagtagtattaattagagttataa 23684958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 28301499 - 28301433
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| |||||||| |||| ||||||||||| |||||||||||||    
T  28301499 tatcataaatgcaaagtgaaatatattgaattgagagtgatgaaagtagtattaattagagttataa 28301433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 38554174 - 38554112
Alignment:
Q  140 aattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttat 202  Q
    ||||||||||||||| ||||||||||||| ||||||| || ||||||||||| ||||||||||    
T  38554174 aattttaaaaacttaacttttcaatgcaacatttatttttaaattctatttttagatctttat 38554112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 41436144 - 41436078
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||||||||||| ||||||||||| |||||||||||||    
T  41436144 tatcataaatgcaaagtggaatatattgaattgagaatgatgaaagtagtattaattagagttataa 41436078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 44424303 - 44424373
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||  ||  |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  44424303 attatcataaatgcaaagttgaatatattgaattgagaatgatgaaagtagtattaattagagttataatt 44424373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 8031809 - 8031740
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||| |||  |||| ||||| ||||||||||||||||||| |||| ||||||||    
T  8031809 cattatcataaatgcaaagttaaatatattgaattgtgaatgataaaagtagtattaattaaagttataa 8031740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 33441823 - 33441892
Alignment:
Q  168 atatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||| | |||||| ||||||||| ||||    
T  33441823 atatttattatttacttctattttaagatctttattttgtgtcctatgagtacaagttaacatttccctt 33441892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 4794640 - 4794570
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||| ||  |||| |||||| | |||| ||||||||||| |||||||||||||||    
T  4794640 attatcataaatgcaaagtggaatatattgaattgaaagtgatgaaagtagtattaattagagttataatt 4794570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 33440858 - 33440912
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatattta 174  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||| |||||||||    
T  33440858 ttgtgcatttataaccttaaaatcttaaaaacttatcttttcaatacaatattta 33440912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 435120 - 435184
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttat 95  Q
    ||||||||||| |||||||||  |||| ||||||||||||| ||||||||||| |||| ||||||    
T  435120 tatcataaatgtaaagtgaaatatattgaattgagaatgatgaaagtagtattaattaaagttat 435184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 5578032 - 5578124
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||||||||| | | ||| ||| ||||||||||||| |||||||| ||| ||||||  ||||||||| |||| ||||| ||| ||||||||||    
T  5578032 ttgtgcatttaatatcttgaaagtttaaaaacttattttttcaatacaaaatttatgttttaattctctttttagatccttaacttgtgccct 5578124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 433483 - 433526
Alignment:
Q  139 aaattttaaaaacttatcttttcaatgcaatatttattatttaa 182  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  433483 aaatcttaaaaacttatctattcaatgcaatatttattatttaa 433526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 3369957 - 3370020
Alignment:
Q  147 aaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcc 210  Q
    |||||||||| ||||||||||| ||||||| |  ||||||||||| ||||| ||||||||||||    
T  3369957 aaaacttatcatttcaatgcaacatttattttgaaattctatttttagatcattatcttgtgcc 3370020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 13915892 - 13915950
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgc-aatatttattatttaattctatttta 192  Q
    ||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||    
T  13915892 cttaaaagtttaaaaatttatattttcaatgcaaatatttattttttaattctatttta 13915950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28108417 - 28108483
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||| ||| |||||| ||  |||| ||||||||||||| ||||||||||| |||||||||||||    
T  28108417 tatcatacatgtaaagtggaatatattgaattgagaatgatgaaagtagtattaattagagttataa 28108483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 37247926 - 37247992
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| |||||||  |||| |||||| |||| |||||||||||||    
T  37247926 tatcataaatgcaaagtgaaatatattgaattgagtgtgatgaaagtaatattaattagagttataa 37247992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 1688024 - 1687971
Alignment:
Q  138 aaaattttaaaaacttatcttttcaatgcaatatttattatttaattctatttt 191  Q
    |||| ||||||||||||||||||||||||||  |||||| ||||||| ||||||    
T  1688024 aaaagtttaaaaacttatcttttcaatgcaacctttattttttaattttatttt 1687971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 19515950 - 19515878
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||| |||  |||| |||||  | | || ||||||||||| |||||||||||||||    
T  19515950 tcattatcataaatgcaaagtaaaatatattgaattgtaagtaatgaaagtagtattaattagagttataatt 19515878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 29937955 - 29938015
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattaga 90  Q
    ||||||||||| |||||| |||  |||| |||||||||||||||||||| |||| ||||||    
T  29937955 ttatcataaatacaaagtaaaatatattgaattgagaatgataaaagtaatattaattaga 29938015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 43077770 - 43077834
Alignment:
Q  33 tcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||| |||||||||  |||| |||||| |||||| |||||| |||| |||||||||||||    
T  43077770 tcataaatgtaaagtgaaatatattgaattgaaaatgatgaaagtaatattaattagagttataa 43077834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 8550681 - 8550752
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||  ||  |||| |||| ||| |||| ||||||||||| |||| ||||||||||    
T  8550681 cattatcataaatgcaaagtctaatatattgaattaagagtgatgaaagtagtattaattatagttataatt 8550752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 10069624 - 10069691
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttat 95  Q
    ||||||||||||||||||||  ||  |||| |||||||| |||| |||||| |||| |||||||||||    
T  10069624 cattatcataaatgcaaagtcgaatatattgaattgagagtgatgaaagtattattaattagagttat 10069691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 13375231 - 13375298
Alignment:
Q  31 tatcataaatgcaaagtgaaaag-tattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| ||||||||||  |||| ||||||||||||| ||| || |||| |||||||||||||    
T  13375231 tatcataaatgtaaagtgaaaatatattgaattgagaatgatgaaaataatattaattagagttataa 13375298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 14384313 - 14384388
Alignment:
Q  24 tcatcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| |||||  ||  |||| |||||||| |||  ||||||||||| |||||| ||||||||    
T  14384313 tcatcattatcataaatgtaaagtataatatattgaattgagagtgaagaaagtagtattaattagaattataatt 14384388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 15996787 - 15996700
Alignment:
Q  143 tttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacat 230  Q
    |||||||| |||| |||| |||  || |||||||| |||||||||||||||| |  |||| ||||||||||| || |||| |||||||    
T  15996787 tttaaaaaattatatttttaatataaaatttattacttaattctattttaagtttcttattttgtgccctaaaggcacaagttaacat 15996700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 7650017 - 7650083
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| |||||| |||||| ||  ||||||| |||||||||||||    
T  7650017 tatcataaatgcaaagtggaatatattgaattgaaaatgatgaagatagtattaattagagttataa 7650083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 10818686 - 10818620
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||||| ||||| ||||  || |||| |||||  |||| |||||||||||||    
T  10818686 tatcataaatgcaaagtgaaatgtattgaattaggagtgatgaaagtgatattaattagagttataa 10818620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 16864978 - 16865044
Alignment:
Q  33 tcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||| |||||||||  |||| ||||| ||||||| |||||  |||| |||||||||||||||    
T  16864978 tcataaatgtaaagtgaaatatattgaattgtgaatgatgaaagtgatattaattagagttataatt 16865044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 24775850 - 24775916
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  |||| |||| | |||||| ||||||||||| || ||||||||||    
T  24775850 tatcataaatgtaaagtgaaatatattgaattaaaaatgatgaaagtagtattaatcagagttataa 24775916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 30757610 - 30757676
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| ||| || ||  |||| ||||| ||||||| ||||||||||| |||||||||||||    
T  30757610 tatcataaatgtaaattggaatatattgaattgggaatgatgaaagtagtattaattagagttataa 30757676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 3199964 - 3199895
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||| || || | ||||||||||| |||||||||||||||    
T  3199964 ttatcataaatgcaaagtataatatattgaattgggagtggtgaaagtagtattaattagagttataatt 3199895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 6075540 - 6075495
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||| || |||| ||||||||||| |||||||||||||||    
T  6075540 tattaaattgggagtgatgaaagtagtattaattagagttataatt 6075495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 6972581 - 6972650
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| || |||||||| |||| ||||| |||||||||    
T  6972581 ttatcataaatgcaaagtagaatatattgaattgagagtggtaaaagtaatattaattagtgttataatt 6972650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 7931537 - 7931606
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| ||||| |||  |||| |||||||| |  | ||||||||||| |||||||||||||||    
T  7931537 ttatcataaatgtaaagtaaaatatattgaattgagagttgtgaaagtagtattaattagagttataatt 7931606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 15485825 - 15485882
Alignment:
Q  178 tttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcc 235  Q
    |||||||| | ||| ||||| |||||||||||||| ||||||||| ||| ||||||||    
T  15485825 tttaattccaattttagatccttatcttgtgcccttagggtacaagttagcattttcc 15485882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 26273829 - 26273756
Alignment:
Q  26 atcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||||  ||  |||| ||||| || |||| ||||||||||| |||| | ||||||||    
T  26273829 atcattatcataaatgcaaagtagaatatattgaattgggagtgatgaaagtagtattaattaaatttataatt 26273756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 28844125 - 28844056
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  |||| |||||||| || | |||||| ||||||||||||||||||||    
T  28844125 ttatcataaatgtaaagtataatatattgaattgagagtggtgaaagtattatttattagagttataatt 28844056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 33434303 - 33434242
Alignment:
Q  147 aaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    |||| |||||||||||||| || ||||||| |||||||||||||| || |  ||||||||||    
T  33434303 aaaatttatcttttcaatgaaacatttattttttaattctatttttaggttattatcttgtg 33434242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 44736761 - 44736716
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||| ||| |||| |||||||||||||||| |||||||||||||||    
T  44736761 tattgaatcgagagtgataaaagtagtattaattagagttataatt 44736716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 314419 - 314391
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  314419 ttaatattgtattgaaaagtgaaatggat 314391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 4794554 - 4794526
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  4794554 ttaatattgtattgaaaagtgaaatggat 4794526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 6723988 - 6724016
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  6723988 ttaatattgtattgaaaagtgaaatggat 6724016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 6972667 - 6972695
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  6972667 ttaatattgtattgaaaagtgaaatggat 6972695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 18181255 - 18181323
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||  ||  | || ||||| |||| || ||||||||||| |||||||||||||||    
T  18181255 tatcataaatgcaaagtagaatattttgaattgggaataatgaaagtagtattaattagagttataatt 18181323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 31546060 - 31546128
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||| |||||||||||| ||  |||| | || ||| |||| ||||||||||| |||||||||||||||    
T  31546060 tatcacaaatgcaaagtggaatatatttagttaagagtgatgaaagtagtattgattagagttataatt 31546128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 44024787 - 44024715
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||||  ||  |||| | || |||||||| ||| ||||||| |||| ||||||||||    
T  44024787 tcattatcataaatgcaaagtagaatatattgagttaagaatgatgaaaatagtattaattatagttataatt 44024715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 44722584 - 44722533
Alignment:
Q  144 ttaaaaacttatcttttca--atgcaatatttattatttaattctattttaa 193  Q
    ||||||||||||||||| |  || ||||||||||| ||||||||||||||||    
T  44722584 ttaaaaacttatctttttataatacaatatttattgtttaattctattttaa 44722533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 35563117 - 35563183
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35563117 aaaaacttatattttcaatgtaatatttattatttaattctattttaagatctttatcttgtgccct 35563183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 17904381 - 17904293
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||| ||||||||||||| |||| |||||| |||||||||||||||||||| ||||||| |||||||| || |||| |||||||||    
T  17904381 ttaaaaatttatcttttcaatacaatttttattgtttaattctattttaagatccttatcttatgccctaaaggcacaagttaacattt 17904293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 41174176 - 41174240
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctt 199  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  41174176 cttaaaatcttaaaaacttattttttcaatacaatatttattatttaattctattttaaaatctt 41174240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 11936050 - 11936130
Alignment:
Q  157 ttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    |||||||| ||||| ||||||||||||| ||||||||||| ||||||||| ||| |||||  |||| ||||||||||||||    
T  11936050 ttttcaatacaatagttattatttaattttattttaagatttttatcttgcgccataaggacacaagttaacattttcctt 11936130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 3494563 - 3494461
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttc 234  Q
    |||||||  ||||||| ||||||||| ||| ||| ||||||| |||||||| ||||| ||||| |||||||||| ||| | || |||| |||||||||||    
T  3494563 cttaaaaacttaaaaatttatctttttaatacaacatttattttttaattccatttttagatccttatcttgtgtccttaaggcacaagttaacattttc 3494464  T
Q  235 ctt 237  Q
    |||    
T  3494463 ctt 3494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 858403 - 858334
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| |||||  |||| |||||||| |||| ||||||||||| |||||||||||||    
T  858403 cattatcataaatgcaaaatgaaatatatttaattgagagtgatgaaagtagtattaattagagttataa 858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 5844400 - 5844490
Alignment:
Q  147 aaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||||| |||||||||||  ||||||| |||||||||||||| || || ||||||| |||||  || |||||| ||| ||||||||||    
T  5844400 aaaacttatattttcaatgcagcatttattttttaattctatttttaggtccttatcttatgcccgtagagtacaagttatcattttcctt 5844490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 17242997 - 17243063
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| |||||||| |||| ||||||||||| |||||||||||||    
T  17242997 tatcataaatgcaaagtggaatatattgaattgagagtgatgaaagtagtattaattagagttataa 17243063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 18393307 - 18393416
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaat-gcaatatt------tattatttaattctattttaagatctttatcttgtgccct 212  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||   ||||||      |||| |||||||||||||||| ||  |||||||||| |||    
T  18393307 ttgtgcatttataaccttaaaaatttaaaaacttatcttttcaatattaatatttagaagtattgtttaattctattttaatattcttatcttgtgtcct 18393406  T
Q  213 aagggtacaa 222  Q
    ||||||||||    
T  18393407 aagggtacaa 18393416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 20189960 - 20189891
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||| |||||| ||  |||| ||||||||||||| |||||| |||| |||||||||||||    
T  20189960 cattatcataaatgtaaagtggaatatattgaattgagaatgatgaaagtaatattaattagagttataa 20189891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 39183670 - 39183738
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| ||  |||| |||||||| |||| |||||| |||| |||||||||||||||    
T  39183670 tatcataaatgcaaagtggaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 39183738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 35470133 - 35470054
Alignment:
Q  152 ttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||  ||||||| | |||||| | ||||| ||| ||||    
T  35470133 ttatcttttcaatacaatacttattgtttaattctattttaagattcttatcttataccctaatgctacaagttagcatt 35470054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 37194029 - 37194103
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccc 211  Q
    ||||||| |||||||||||| |||| ||| | ||||||||||||||||| ||||||||||| |||| ||| |||||    
T  37194029 ttaaaatcttaaaaacttat-ttttaaataccatatttattatttaattatattttaagatatttaccttatgccc 37194103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 42479610 - 42479539
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| || ||  ||||||||||| |||||||||||||  ||| |||| ||||||||||    
T  42479610 cattatcataaatgcaaaatgcaatatattaaattgaaaatgataaaagtaacattaattatagttataatt 42479539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 12517134 - 12517204
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    |||||||  ||||||| |||| ||||||||  |||||||||| |||| ||||||||||||||| |||||||    
T  12517134 cttaaaagcttaaaaatttatattttcaataaaatatttattgtttatttctattttaagatccttatctt 12517204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 35334569 - 35334635
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || |||| ||||||||||| |||||||||||||    
T  35334569 tatcataaatgcaaagtggaatatattgaattgggagtgatgaaagtagtattaattagagttataa 35334635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 42207136 - 42207074
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    |||| ||||| |||||||||||| |||||||  |||||| |||||| ||||||||||||||||    
T  42207136 aaaaccttatattttcaatgcaacatttatttcttaattttatttttagatctttatcttgtg 42207074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 42211398 - 42211332
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| ||||| || |||| ||||||||||| ||| |||||||||    
T  42211398 tatcataaatgcaaagtgaaatatattgaattgtgagtgatgaaagtagtattaatttgagttataa 42211332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 32659883 - 32659814
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataat 98  Q
    ||||| |||||||||||||  ||  |||| |||||||| || |||||||| |||||||||||||||||||    
T  32659883 attattataaatgcaaagtataatatattgaattgagactggtaaaagtaatatttattagagttataat 32659814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 33498534 - 33498607
Alignment:
Q  28 cattatcataaatgcaaagt-gaaaa-gtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||||  ||||| ||||| |||||||||||||||    
T  33498534 cattaacataaatgcaaagtagaatatgtattaaattgagaatgaagaaagttgtattaattagagttataatt 33498607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 34534964 - 34534919
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||    
T  34534964 tattgaattgagaatgataaaagtaatattaattagagttataatt 34534919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 4475314 - 4475254
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttatta 88  Q
    ||||||||||||||||||||| ||| | || |||||  |||||||||||||||||| ||||    
T  4475314 cattatcataaatgcaaagtggaaaatgttgaattggaaatgataaaagtagtattaatta 4475254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 16283630 - 16283698
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| ||  |||| |||||||| |||| ||||||| ||  |||||||||||||||    
T  16283630 tatcataaatgcaaagtggaatatattgaattgagagtgatgaaagtagcatcaattagagttataatt 16283698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 28993942 - 28993886
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctat 188  Q
    ||||| |||| ||||||||||||| ||| |||| ||||||||||| |||||||||||    
T  28993942 aacctgaaaagtttaaaaacttatatttacaatacaatatttattgtttaattctat 28993886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 6173020 - 6173091
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||  ||  |||| ||||| || |||| ||||||||||| |||| ||||||||||    
T  6173020 cattatcataaatgcaaagtataatatattgaattgtgagtgatgaaagtagtattaattatagttataatt 6173091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 31956798 - 31956727
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||| |||||  ||  |||| | |||||| ||||||||||| |||| |||||||||||||||    
T  31956798 cattatcataaatgtaaagttgaatatattgagttgagagtgataaaagtaatattaattagagttataatt 31956727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 39035897 - 39035964
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||| | ||||||||||  ||||||||||||| || |||||||||| || ||||| |||||||    
T  39035897 ttatcataactacaaagtgaaatatattaaattgagagtggtaaaagtagttttaattagtgttataa 39035964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 39212591 - 39212662
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||||  ||  |||| ||||| ||  ||| ||||||||||| |||||||||||||||    
T  39212591 cattatcataaatgcaaagtagaatatattgaattgggagcgatgaaagtagtattaattagagttataatt 39212662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 42158686 - 42158753
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttat 95  Q
    |||||||||||||||||||| |||  | || ||||||||| ||| |||||| |||| |||||||||||    
T  42158686 cattatcataaatgcaaagtaaaatatgttgaattgagaaagatgaaagtaatattaattagagttat 42158753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 7613772 - 7613706
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  |||| |||||  ||||||||||||| |||| |||| ||||||||    
T  7613772 tatcataaatgtaaagtgaaatatattgaattggaaatgataaaagtaatattaattatagttataa 7613706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 11099520 - 11099586
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||| ||||||| ||  |||| ||||| || |||| ||||||||||| |||||||||||||    
T  11099520 tatcataaatacaaagtggaatatattgaattgggagtgatgaaagtagtattaattagagttataa 11099586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 41184158 - 41184116
Alignment:
Q  55 attaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||| |||||| |||| |||||||||||||    
T  41184158 attaaattgagaatgatgaaagtaatattaattagagttataa 41184116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 72147 - 72216
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||||||||  || |||| ||||||||||| |||||| ||||||||    
T  72147 ttatcataaatgcaaagtagaatatattaaattaggagtgatgaaagtagtattaattagatttataatt 72216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 35476601 - 35476650
Alignment:
Q  167 aatatttattatttaattctattttaagatctttatcttgtgccctaagg 216  Q
    |||||||||| ||||||| |||||||| || ||||||||||||| |||||    
T  35476601 aatatttattgtttaattttattttaaaatttttatcttgtgccttaagg 35476650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 25344778 - 25344838
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttatta 88  Q
    |||||||||||||| |||||  ||  |||| ||||||||||||| ||||||||||| ||||    
T  25344778 cattatcataaatgtaaagtagaatatattgaattgagaatgatgaaagtagtattaatta 25344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 42871034 - 42871090
Alignment:
Q  35 ataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagag 91  Q
    |||||||||||||| ||  |||||| ||| || |||||||||||||||| |||||||    
T  42871034 ataaatgcaaagtggaatatattaacttgggattgataaaagtagtattaattagag 42871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 12790093 - 12790198
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||| ||||| ||||||| ||| ||||    
T  12790093 aacctaaaaatcttaaaaatttatcttttcaatacaatatttattatttaatcctattttaagatatttatattgtggcctaaaggtacaagttagcatt 12790192  T
Q  232 ttcctt 237  Q
    | ||||    
T  12790193 tccctt 12790198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 33968015 - 33967912
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||||||||  ||||||| |||| |||| ||| ||||||||||| |||| ||||||| ||||||| |||||||||||| |||||| |||| ||||||||    
T  33968015 aaccttaaaaacttaaaaagttatatttttaatacaatatttattgtttatttctattataagatccttatcttgtgccttaagggcacaagttaacatt 33967916  T
Q  232 ttcc 235  Q
    ||||    
T  33967915 ttcc 33967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 27668365 - 27668437
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||||||||  |||| |||| ||| |||||||||||||||| |||||||||||||||    
T  27668365 tcattatcataaatgcaaagtgaaatatattgaattaagagtgataaaagtagtattaattagagttataatt 27668437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 50164060 - 50164144
Alignment:
Q  152 ttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcct 236  Q
    ||||||||||||| ||| ||||||| |||||||| | ||| ||||| ||||||||||||||||||| |||| |||||||||||||    
T  50164060 ttatcttttcaatacaacatttattttttaattccacttttagatccttatcttgtgccctaagggcacaagttaacattttcct 50164144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 33640986 - 33641047
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatc 197  Q
    ||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  33640986 ttaaaatcttaaaaacttatattttcaatacaatatttattgtttaattctattttaagatc 33641047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 34819812 - 34819736
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    |||||||||| || ||||| ||||||||||||| |||| |||||| |||||||||||||||||||  ||||||||||    
T  34819812 aaccttaaaagttaaaaaatttatcttttcaatacaatttttattgtttaattctattttaagattcttatcttgtg 34819736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 47068833 - 47068746
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatttt 233  Q
    ||||| ||||||||| |||  ||||||||||||||| ||||||| ||||||| |||||||||||  | ||||||||| ||||||||||    
T  47068833 aaaaaattatctttttaatataatatttattatttatttctattctaagatccttatcttgtgcgtttagggtacaagttaacatttt 47068746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 52247488 - 52247421
Alignment:
Q  145 taaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||| |||| |||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  52247488 taaatacttgtctttttaatacaatatttattgtttaattctattttaaaatctttatcttgtgccct 52247421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 48953947 - 48954037
Alignment:
Q  136 ttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaatta 226  Q
    |||||| ||| |||| |||||||||||||  || |||||||| |||||||||||||||  |||||| |||||| |||||||| ||||||||    
T  48953947 ttaaaagtttcaaaagttatcttttcaatataaaatttattacttaattctattttaaattctttaacttgtgtcctaagggcacaaatta 48954037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 50303046 - 50302944
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttc 234  Q
    ||||||| || |||||||||| |||||||| ||||||||||| |||  |||||||||||||| |||||||| |||||| | |  |||| ||||||||| |    
T  50303046 cttaaaagttcaaaaacttatattttcaatacaatatttattgtttgtttctattttaagatatttatcttatgcccttaagacacaagttaacatttcc 50302947  T
Q  235 ctt 237  Q
    |||    
T  50302946 ctt 50302944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 55406907 - 55406992
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||||||  ||||||||||  || ||||||||| ||| |||| ||||||||| | |||||||||||||||||||| |||||||    
T  55406907 ttgtgcatttataaccttaaaaactttaaaacttatttttccaatacaatatttagtgtttaattctattttaagatccttatctt 55406992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 52325242 - 52325174
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| ||  |||| ||||||||||||  ||||||||||| |||||||||||||||    
T  52325242 tatcataaatgcaaagtggaatatattgaattgagaatgacgaaagtagtattaattagagttataatt 52325174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 54493973 - 54493907
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  ||||||||||  |||||| ||||||||||| |||||||||||||    
T  54493973 tatcataaatgtaaagtgaaatatattaaattggaaatgatgaaagtagtattaattagagttataa 54493907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 14998785 - 14998881
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||| ||||||||||| ||||||||||  ||||| |||| ||||||||||||||| |||  |||||||||| | ||||| ||||| ||| |||||    
T  14998785 cttaaaaatttaaaaactt-tcttttcaatataatatatattttttaattctattttatgattcttatcttgtgtcataaggatacaagttagcattt 14998881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 29793717 - 29793796
Alignment:
Q  158 tttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||||||| ||||||| |||||||| | ||| | || ||||||||||| ||| |||| |||||||| ||||||||||    
T  29793717 tttcaatgcaacatttattttttaattccacttttatatttttatcttgtgtccttagggcacaaattagcattttcctt 29793796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 47068948 - 47068885
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgt 207  Q
    ||||||| ||||||||| ||| |||||||||||||| | ||||||| ||||||| |||||||||    
T  47068948 ttaaaaaattatctttttaatacaatatttattattgatttctattctaagatccttatcttgt 47068885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 26134745 - 26134811
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| ||||| || |||| ||||||||| | |||||||||||||    
T  26134745 tatcataaatgcaaagtgaaatatattgaattgggagtgatgaaagtagtactaattagagttataa 26134811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 26832133 - 26832071
Alignment:
Q  34 cataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    ||||||||||||||||||  ||||||||||  | |||| ||||||||||| ||||||||||||    
T  26832133 cataaatgcaaagtgaaatatattaaattggtagtgatgaaagtagtattaattagagttata 26832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 28309533 - 28309468
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatct 198  Q
    |||||||||  || |||||||||| |||||||| ||||||||||| |||| ||||||||||||||||    
T  28309533 aaccttaaagattaaaaaacttattttttcaatacaatatttatt-tttagttctattttaagatct 28309468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 28958622 - 28958684
Alignment:
Q  147 aaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    |||| ||||||||||||| ||||| ||||| |||| |||| |||||||||| |||||||||||    
T  28958622 aaaatttatcttttcaatacaataattattgtttacttctgttttaagatccttatcttgtgc 28958684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 11529153 - 11529218
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    |||||||||||||||||| ||  |||||||||  || ||||||||||| |||| ||||||||||||    
T  11529153 tatcataaatgcaaagtggaatatattaaattatgagtgataaaagtaatattaattagagttata 11529218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 15082070 - 15082002
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||| ||||| |||||  ||||||||||||| |||| ||| ||||||| |||||||||||||    
T  15082070 cattatcataaaagcaaaatgaaatatattaaattgagagtgatgaaa-tagtattaattagagttataa 15082002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 34081120 - 34081165
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||    
T  34081120 tattaaattgagaatgataaaagtagtattaattaaatttataatt 34081165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 39329791 - 39329860
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| |||| ||||||||||| |||||| ||||||||    
T  39329791 ttatcataaatgcaaagtagaatatattgaattgagagtgatgaaagtagtattaattagaattataatt 39329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 21758320 - 21758265
Alignment:
Q  156 cttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    ||||| ||| |||||||||||||| ||||||||||||||||  ||||||||||||||    
T  21758320 ctttttaatacaatatttattatt-aattctattttaagattcttatcttgtgccct 21758265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 37041915 - 37041983
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||  |||||||||  |||| |||||  |||||| ||||||||||| |||||||||||||||    
T  37041915 tatcataaatataaagtgaaatatattgaattggaaatgatgaaagtagtattaattagagttataatt 37041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 46627964 - 46628024
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttatta 88  Q
    ||||||||||||||||||||  ||  |||| ||| ||||||||||||||||||||| ||||    
T  46627964 cattatcataaatgcaaagtataatatattgaatagagaatgataaaagtagtattaatta 46628024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 3862211 - 3862282
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| | |||  || | |||||||| |||| |||||| |||| |||||||||||||||    
T  3862211 cattatcataaatgcaaattaaaatatactgaattgagagtgatgaaagtaatattaattagagttataatt 3862282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 9218211 - 9218144
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||  ||  || | |||||||| |||| ||||||||||| |||||||||||||    
T  9218211 ttatcataaatgcaaagtagaatataatgaattgagagtgatgaaagtagtattaattagagttataa 9218144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 14756156 - 14756215
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattaga 90  Q
    |||||||||||||||||  ||  ||||||||||| |||||||||| ||||||| ||||||    
T  14756156 tatcataaatgcaaagtagaatatattaaattgaaaatgataaaaatagtattaattaga 14756215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 41242201 - 41242142
Alignment:
Q  170 atttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaaca 229  Q
    |||||| ||||||||||||||| |||| |||| |||||||||| | || |||||||||||    
T  41242201 atttatgatttaattctatttttagatttttaacttgtgcccttacggcacaaattaaca 41242142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 5245477 - 5245411
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||| ||||||| ||  |||| |||||||| |||| ||||| ||||| |||||||||||||    
T  5245477 tatcataaatacaaagtggaatatattgaattgagagtgatgaaagtggtattaattagagttataa 5245411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 32827346 - 32827412
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  |||| ||||   |||||| ||||||||||| |||||||||||||    
T  32827346 tatcataaatgtaaagtgaaatatattgaattagaaatgatgaaagtagtattaattagagttataa 32827412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 33994722 - 33994656
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  |||| || |||||||||| ||||| ||||| |||||||||||||    
T  33994722 tatcataaatgtaaagtggaatatattgaactgagaatgatgaaagtggtattaattagagttataa 33994656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 39866595 - 39866661
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||   ||| ||||| || |||| ||||| ||||| |||||||||||||    
T  39866595 tatcataaatgcaaagtgaaatacattgaattgtgagtgatgaaagtggtattaattagagttataa 39866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 44234159 - 44234089
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||| ||||||||||||||||  |||| |||||| | |||| |||||||| || |||||| ||||||    
T  44234159 tcattatcgtaaatgcaaagtgaaatatattgaattgaaattgatgaaagtagtcttaattagaattataa 44234089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 50170549 - 50170472
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcccta 213  Q
    ||||||| ||| |||| |||||||||||||  || ||||||| |||| |||||||||||| || ||| |||||||||||    
T  50170549 cttaaaaatttcaaaagttatcttttcaatataaaatttatttttta-ttctattttaagctccttaacttgtgcccta 50170472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 40614166 - 40614219
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtat 82  Q
    |||||||| ||||||||||||||  | |||||||| ||| ||||||||||||||    
T  40614166 attatcatgaatgcaaagtgaaatatgttaaattgggaacgataaaagtagtat 40614219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 46194247 - 46194316
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| || | ||||||||||| ||||| |||||||||    
T  46194247 ttatcataaatgcaaagtagaatatattgaattgagagtggtgaaagtagtattaattagtgttataatt 46194316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 47496235 - 47496166
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  |||| |||| ||| |||| ||||||||||| |||||||||||||||    
T  47496235 ttatcataaatgtaaagtctaatatattgaattaagagtgatgaaagtagtattaattagagttataatt 47496166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 53754105 - 53754174
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  |||| |||| |||||  ||||||||||||| |||||||||||||||    
T  53754105 ttatcataaatgtaaagtagaatatattgaattaagaatagtaaaagtagtattaattagagttataatt 53754174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 2868558 - 2868530
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  2868558 ttaatattgtattgaaaagtgaaatggat 2868530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 8498239 - 8498211
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  8498239 ttaatattgtattgaaaagtgaaatggat 8498211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 41287029 - 41287001
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  41287029 ttaatattgtattgaaaagtgaaatggat 41287001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 2457953 - 2458057
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatt 231  Q
    ||||||||||  |||| | |||||||||||||| ||||||| ||| |||||||||||||||||||| |||| || |||| ||||||||||| ||||||||    
T  2457953 aaccttaaaagcttaagagcttatcttttcaatacaatattgattgtttaattctattttaagatccttattttatgccttaagggtacaagttaacatt 2458052  T
Q  232 ttcct 236  Q
    |||||    
T  2458053 ttcct 2458057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 36783278 - 36783365
Alignment:
Q  146 aaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacatttt 233  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||| || | |||| ||||||||||    
T  36783278 aaaaagttatcttttcaatacaatatttattatttaattctattttaagattcttatcttgtgcccttagtgcacaagttaacatttt 36783365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 23031771 - 23031855
Alignment:
Q  132 aaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagg 216  Q
    ||||||||||  ||||||| ||||||||| ||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  23031771 aaccttaaaaacttaaaaatttatctttttaatacaatatttattgttcaattctattttaagatcattatcttgtgccctaagg 23031855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 44599456 - 44599389
Alignment:
Q  120 ttgtgcattttaaaccttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattcta 187  Q
    ||||||||||  ||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  44599456 ttgtgcatttataaccttaaaatcttaaaaacttatattttcaatacaatatttattatttaattcta 44599389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 3399301 - 3399228
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtg 208  Q
    ||||||| ||||||||||||| |||||||||||||||||||| || | ||||||||| ||||| ||||||||||    
T  3399301 cttaaaagtttaaaaacttatgttttcaatgcaatatttatttttcatttctatttttagatccttatcttgtg 3399228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 32948307 - 32948384
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||||||  ||| ||| |||| |||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||    
T  32948307 cttaaaaacttacaaaattattttttcaatgcaatatttattttttaattccacttttagatctttatcttgtgccct 32948384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 23703981 - 23703915
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| ||| |||||  |||| |||||| |||||||||||||||||| |||||||||||||    
T  23703981 tatcataaatgtaaaatgaaatatattgaattgaaaatgataaaagtagtattaattagagttataa 23703915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 34963853 - 34963919
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||||||  |||| ||||||||||||| |||||| |||| |||||||||||||    
T  34963853 tatcataaatgtaaagtgaaatatatttaattgagaatgatgaaagtaatattaattagagttataa 34963919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 10355776 - 10355845
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||||||||| |||||||| |||| |||||||||||||||    
T  10355776 ttatcataaatgcaaagtagaatatattgaattgagaatggtaaaagtaatattaattagagttataatt 10355845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 32546487 - 32546580
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    ||||||| |||||||||||||| || ||||||| |||||||  | ||| ||||| ||||||| |||||| || | |||| ||||||||||||||    
T  32546487 ttaaaaatttatcttttcaatgtaacatttattttttaatttcacttttagatccttatcttatgcccttagagcacaagttaacattttcctt 32546580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 29434624 - 29434688
Alignment:
Q  33 tcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||| ||  |||| ||||| ||||||| ||||||||||| |||||||||||||    
T  29434624 tcataaatgcaaagtggaatatattgaattgtgaatgatgaaagtagtattaattagagttataa 29434688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 46095462 - 46095514
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatt 83  Q
    |||||||||||||||||||||  |||| |||||||| ||||||||||||||||    
T  46095462 tatcataaatgcaaagtgaaatatattgaattgagagtgataaaagtagtatt 46095514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 24164773 - 24164850
Alignment:
Q  152 ttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaaca 229  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||| | ||||||| |||| |||| || |||| ||||||    
T  24164773 ttatcttttcaatacaaaaattattttttaattctattttaagttttttatctagtgctctaaaggcacaagttaaca 24164850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 25778810 - 25778741
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| |||  |||| |||||  | |||| ||||||||||| |||||||||||||||    
T  25778810 ttatcataaatgcaaagtaaaatatattgaattggaagtgatgaaagtagtattaattagagttataatt 25778741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 32650132 - 32650055
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccct 212  Q
    |||||||  ||||||| ||||||||||||| ||| ||||||| |||||||| | ||| ||||| ||||| ||||||||    
T  32650132 cttaaaaacttaaaaatttatcttttcaatacaacatttattttttaattccacttttagatccttatcatgtgccct 32650055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 14648957 - 14649029
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||||| ||  ||  |||| |||||||| |||| |||||| |||| |||||||||||||||    
T  14648957 tcattatcataaatgcaaggtagaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 14649029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 25940789 - 25940856
Alignment:
Q  29 attatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    ||||||||||||||||| |  ||  ||||||||| ||| |||| ||||||||||| ||||||||||||    
T  25940789 attatcataaatgcaaactagaatatattaaatttagagtgatgaaagtagtattaattagagttata 25940856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 30003823 - 30003898
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgcc 210  Q
    |||||||  |||||||||||| |||||||| ||| ||||||  ||||||||| |||| |||| |||| ||||||||    
T  30003823 cttaaaaagttaaaaacttattttttcaatacaaaatttatgttttaattctttttttagatttttaacttgtgcc 30003898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 2842094 - 2842160
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||||||  |||| |||| ||| |||| ||||||||||| |||| | ||||||    
T  2842094 tatcataaatgcaaagtgaaatatattgaatttagagtgatgaaagtagtattaattataattataa 2842160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 6697150 - 6697096
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagta 81  Q
    ||||||||||||||||||||||||  || || ||||| |||| ||||||||||||    
T  6697150 tcattatcataaatgcaaagtgaagggtgttgaattgggaattataaaagtagta 6697096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 16831656 - 16831570
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacat 230  Q
    |||||||||||| |||||||| ||| | ||||  |||| ||||||||| | ||| ||| ||||||||||||||  |||| |||||||    
T  16831656 ttaaaaacttatattttcaatacaaaacttatgttttatttctatttttacatccttaacttgtgccctaaggacacaagttaacat 16831570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 29257612 - 29257546
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || |||| |||||| |||| |||||||||||||    
T  29257612 tatcataaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 29257546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 31581485 - 31581551
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| ||| || ||  |||| |||||| |||||| ||||||||||| |||||||||||||    
T  31581485 tatcataaatgtaaaatggaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 31581551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 34001898 - 34001964
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagtta 94  Q
    ||||||||||||||||||||| ||  |||| |||||||  |||| ||||||||||| |||| |||||    
T  34001898 cattatcataaatgcaaagtggaatatattgaattgagggtgatgaaagtagtattaattacagtta 34001964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 37490660 - 37490726
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| |||||| | ||||||||||| |||| |||||| ||||||    
T  37490660 tatcataaatgcaaagtggaatatattgaattgatagtgataaaagtaatattaattagaattataa 37490726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 40590867 - 40590933
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||| ||||||  ||  |||| || ||||||| |||||||||||||| |||||||||||||    
T  40590867 tatcataaatacaaagtagaatatattgaaatgagaataataaaagtagtattaattagagttataa 40590933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 48981721 - 48981655
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  ||||||||||  ||||||||||||||| || |||||| ||||||    
T  48981721 tatcataaatgtaaagtggaatatattaaattggaaatgataaaagtagtgttaattagaattataa 48981655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 9602927 - 9602858
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| || | ||||||||||| ||||| |||||||||    
T  9602927 ttatcataaatgcaaagtagaacatattgaattgagagtggtgaaagtagtattaattagtgttataatt 9602858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 9830498 - 9830429
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| |||||||| || | ||||||||||| ||||| |||||||||    
T  9830498 ttatcataaatgcaaagtagaacatattgaattgagagtggtgaaagtagtattaattagtgttataatt 9830429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 34064281 - 34064212
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  |||| |||||||| |||| |||||| |||| |||||||||||||||    
T  34064281 ttatcataaatgtaaagtagaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 34064212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 37264379 - 37264310
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||| || || | ||||||||||| |||||||||||||||    
T  37264379 ttatcataaatgcaaagtagaatatattgaattgggagtggtgaaagtagtattaattagagttataatt 37264310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 37496438 - 37496507
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| |||||  ||  |||| |||||||| |||| ||||||||||| |||| ||||||||||    
T  37496438 ttatcataaatgtaaagtagaatatattgaattgagagtgatgaaagtagtattaattaaagttataatt 37496507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 9603528 - 9603576
Alignment:
Q  143 tttaaaaacttatcttttcaatgcaatatttattatttaattctatttt 191  Q
    ||||||| |||||||||||||  ||||||||||  ||||||||||||||    
T  9603528 tttaaaatcttatcttttcaaaacaatatttatgttttaattctatttt 9603576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 9831099 - 9831147
Alignment:
Q  143 tttaaaaacttatcttttcaatgcaatatttattatttaattctatttt 191  Q
    ||||||| |||||||||||||  ||||||||||  ||||||||||||||    
T  9831099 tttaaaatcttatcttttcaaaacaatatttatgttttaattctatttt 9831147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 35013965 - 35014021
Alignment:
Q  32 atcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttatta 88  Q
    |||||||| |||||||||||| |||| |||||||| |||| ||| ||||||| ||||    
T  35013965 atcataaaagcaaagtgaaaaatattgaattgagagtgatgaaattagtattaatta 35014021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 37452 - 37546
Alignment:
Q  143 tttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttcctt 237  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||||| ||  ||||||||||||  ||||| | || ||||||||||||||    
T  37452 tttaaacacttatattttcaatgcaatatttattttttaattctattttaatattcttatcttgtgccacaagggcataagttaacattttcctt 37546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 1288217 - 1288129
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||| ||||  |||||| | |||||||| |||||    
T  1288217 ttaaaaacttatattttcaatacaatatttataatttaattctattttaaaatctttattttgtatcctaagtgcacaaattagcattt 1288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 32604553 - 32604641
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattt 232  Q
    ||||||| |||| |||||||| ||||||||||| |||| ||||||||||||||| | |||||||||||||| || |||| |||||||||    
T  32604553 ttaaaaatttatattttcaatacaatatttattgtttatttctattttaagatcgtaatcttgtgccctaaaggcacaagttaacattt 32604641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 34989652 - 34989564
Alignment:
Q  145 taaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgccctaagggtacaaattaacattttc 234  Q
    ||||| |||||||||||||| ||||||||||| |||||||   || ||||||| ||||||||||| || ||||||||| ||| |||||||    
T  34989652 taaaaccttatcttttcaatacaatatttattttttaatt-acttataagatccttatcttgtgctcttagggtacaagttagcattttc 34989564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 14306280 - 14306348
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    |||||||||||||| ||||||||| |||||||||||||| |||| ||  || |||| ||||||||||||    
T  14306280 cattatcataaatgtaaagtgaaatgtattaaattgagagtgatgaacatattattaattagagttata 14306348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 7739557 - 7739622
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagtt 93  Q
    |||||| ||||||| |||||  ||  |||| ||||||||||||||||||||||||| |||||||||    
T  7739557 cattattataaatgtaaagtagaagatattgaattgagaatgataaaagtagtattaattagagtt 7739622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 15321266 - 15321335
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    ||||||||||||||||||  ||  |||| ||||||||||| | ||||||||||| ||||| |||||||||    
T  15321266 ttatcataaatgcaaagtagaatatattgaattgagaatgttgaaagtagtattaattagtgttataatt 15321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 14312687 - 14312755
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttata 96  Q
    |||||||||||||| ||||||||| ||||| |||||||| |||| ||  || |||| ||||||||||||    
T  14312687 cattatcataaatgtaaagtgaaatgtattgaattgagagtgatgaacatattattaattagagttata 14312755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 33109415 - 33109372
Alignment:
Q  54 tattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||    
T  33109415 tattgaattgagaatgatgaaagtagtattaattagagttataa 33109372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 8569787 - 8569849
Alignment:
Q  37 aaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||||||  ||||||||||||| || | |||||| |||| ||||||| |||||||    
T  8569787 aaatgcaaagtgaaatatattaaattgagagtggtgaaagtaatattaattagagctataatt 8569849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 7301119 - 7301188
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||| |||||| ||  |||| |||||| |||||| |||||| ||||  ||||||||||||    
T  7301119 cattatcataaatgtaaagtggaatatattgaattgaaaatgatgaaagtaatattagttagagttataa 7301188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 31237268 - 31237332
Alignment:
Q  144 ttaaaaacttatcttttcaatgcaatatttattatttaattctattttaagatctttatcttgtgc 209  Q
    ||||||||||| |||| |||| ||||||| ||||||||||| |||| ||||||| |||| ||||||    
T  31237268 ttaaaaacttaactttccaatacaatatt-attatttaattttattgtaagatccttattttgtgc 31237332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 9755269 - 9755297
Alignment:
Q  246 ttaatattgtattgaaaagtgaaatggat 274  Q
    |||||||||||||||||||||||||||||    
T  9755269 ttaatattgtattgaaaagtgaaatggat 9755297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 26356338 - 26356267
Alignment:
Q  27 tcattatcataaatgcaaagtgaaaagtattaaattgagaa-tgataaaagtagtatttattagagttataat 98  Q
    |||| ||||||||||||||||||||  |||| |||| |||| |||| ||||||||||| |||| |||||||||    
T  26356338 tcatcatcataaatgcaaagtgaaatatattgaatt-agaagtgatgaaagtagtattaattaaagttataat 26356267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 36544 - 36488
Alignment:
Q  135 cttaaaattttaaaaacttatcttttcaatgcaatatttattatttaattctatttt 191  Q
    |||||||  ||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  36544 cttaaaagcttaaaaacttatcatttcaatgcaacatttattttttaattctatttt 36488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 8948 - 8886
Alignment:
Q  35 ataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||| ||  |||| ||||||||||||| |||||| |||| |||||||||||||    
T  8948 ataaatgcaaagtggaatatattgaattgagaatgatgaaagtaatattaattagagttataa 8886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 14519 - 14455
Alignment:
Q  33 tcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||| |||||| ||  |||| |||||| |||||| ||||||||||| |||||||||||||    
T  14519 tcataaatgtaaagtggaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 14455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 9591 - 9657
Alignment:
Q  28 cattatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||||||||||||| ||  || | |||||||| |||| ||||||||||| |||||||||||||    
T  9591 cattatcataaatgcaaagtggaa--ta-tgaattgagagtgatgaaagtagtattaattagagttataa 9657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 26111 - 26073
Alignment:
Q  167 aatatttattatttaattctattttaagatctttatctt 205  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  26111 aatatttatcatttaattctattttaatatctttatctt 26073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 26387 - 26321
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    ||||||||||| |||||| ||  |||| |||||  ||||||||||||| |||| |||||||||||||    
T  26387 tatcataaatgtaaagtggaatatattgaattggaaatgataaaagtaatattaattagagttataa 26321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 26678 - 26612
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||||||||||| ||  |||| ||||| || |||| ||||||||||| |||||| ||||||    
T  26678 tatcataaatgcaaagtggaatatattgaattgcgagtgatgaaagtagtattaattagaattataa 26612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 394843 - 394777
Alignment:
Q  31 tatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataa 97  Q
    |||||||||| ||||||| ||  || | |||||||| |||| ||||||||||| |||||||||||||    
T  394843 tatcataaatacaaagtggaatatagtgaattgagagtgatgaaagtagtattaattagagttataa 394777  T

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Target: scaffold0685 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 6441 - 6510
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| ||||| |||  |||| |||||||| || | |||||| |||| |||||||||||||||    
T  6441 ttatcataaatgtaaagtaaaatatattgaattgagagtggtgaaagtaatattaattagagttataatt 6510  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 7995 - 8064
Alignment:
Q  30 ttatcataaatgcaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 99  Q
    |||||||||||| ||||| |||  |||| ||||||||||  | ||||||||||| |||| ||||||||||    
T  7995 ttatcataaatgtaaagtaaaatatattgaattgagaattgtgaaagtagtattaattaaagttataatt 8064  T

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