View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21689_high_11 (Length: 322)
Name: NF21689_high_11
Description: NF21689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21689_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 41680795 - 41681131
Alignment:
| Q |
1 |
agataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggagagtccccttcgagtcacctt |
100 |
Q |
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|||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
41680795 |
agataccaagtatgaagaaaaaacttgcaattgtatttaatttaattaataagaatgtgtaacacaagagcaaaaaggagagtccccttcaagtcaactt |
41680894 |
T |
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| Q |
101 |
gctgcactccagtgtctaacataatgtccatccctaaggtataacctcgctgcctaaccataaata-------------------tagatgggcatccta |
181 |
Q |
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| T |
41680895 |
gctgcactccagtgacttacataatgtccatccgtaaggtataacctcgctgcctaaccataaataaattgaaaccacaaaaaaatagatgggcatccta |
41680994 |
T |
|
| Q |
182 |
ccctcactttgcacaatagtgttgacttgtctatacactgaacatagccaaaaaaccacctccatttcacttgatcaacatcttgttggcattgtgaaaa |
281 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41680995 |
ccctcactttgcagaacagtgttgacttgtctatacactgaacatagccaaaaaaccacctccatttcacttgatcaacatcttgttggcattgtgaaaa |
41681094 |
T |
|
| Q |
282 |
ttggcatttgcaccacctaacaccctaacaccaaact |
318 |
Q |
| |
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| T |
41681095 |
ttggcatttgcaccacctaataccctgacaccaaact |
41681131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 19279967 - 19280043
Alignment:
| Q |
4 |
taccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag |
80 |
Q |
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| T |
19279967 |
taccaagcatgaagaagaagcttgcaactatctctgatatgatgaataagagggtgcaacacaagagcaaaaaggag |
19280043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 6251900 - 6251837
Alignment:
| Q |
48 |
aataagaaggtgtaacacaagagcaaaaaggagagtccccttcgagtcaccttgctgcactccag |
112 |
Q |
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||||||| ||||||||| ||||||||||||||| || |||| | ||||||||| |||||||||| |
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| T |
6251900 |
aataagagggtgtaacataagagcaaaaaggagcgt-ccctatgggtcaccttgttgcactccag |
6251837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 19036827 - 19036903
Alignment:
| Q |
4 |
taccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag |
80 |
Q |
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|||||||||||||| | || ||||||| | | | |||| | || ||||||| |||| |||||||||||||||||||| |
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| T |
19036827 |
taccaagcatgaagaataagcttgcaactatctctgatatgatgaataagagggtgcaacacaagagcaaaaaggag |
19036903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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