View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21689_high_9 (Length: 328)
Name: NF21689_high_9
Description: NF21689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21689_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 3645231 - 3645549
Alignment:
| Q |
1 |
catatgcttagattcttgtcatttacaatataaatagtgagatatggacaaaattttaagatnnnnnnnntgtagttatatatgtgtctttagttgtttg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
3645231 |
catatgcttagattcttgtcgtttacaatataaatagtgagatatggacaaaattttaagataaaaaaaatgtagttatat--gtgtctttagttgtttg |
3645328 |
T |
|
| Q |
101 |
aaatcgcttaaaataataccttcgtgctatgaatttggctttattgaagtaaaacccttcannnnnnnattggcaggttttgaaattatggttggtgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
3645329 |
aaatcgcttaaaataataccttcgtgctatgaatttggctttattgaagtaaaacccttcatttttttattggcaggttttgaaattgtggttggtgaca |
3645428 |
T |
|
| Q |
201 |
caaaatctgtcttttattattgctggtgccactgttgttaccttacttgtctactcatctttgaagtttacaaatttcccagttttcttattacttgtag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3645429 |
caaaatctgtcttttattattgctggtgccactgttgttaccttactagtctactcatctttgaagtttacaaatttcccagttttcttattacttgtag |
3645528 |
T |
|
| Q |
301 |
tcataatcaatatctgtggtg |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3645529 |
tcataatcaatatctgtggtg |
3645549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 169 - 321
Target Start/End: Original strand, 3636145 - 3636297
Alignment:
| Q |
169 |
attggcaggttttgaaattatggttggtgacacaaaatctgtcttttattattgctggtgccactgttgttaccttacttgtctactcatctttgaagtt |
268 |
Q |
| |
|
|||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3636145 |
attggcaggtattgcaattgtggctggtgacacaaaatctgtcttttattattgctggtgccactgtagttaccttacttgtctactcatctttgaagtt |
3636244 |
T |
|
| Q |
269 |
tacaaatttcccagttttcttattacttgtagtcataatcaatatctgtggtg |
321 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3636245 |
tacaaatttcacagttttcttattacttgtggtgataatcaatatctgtggtg |
3636297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University